netcdf-cxx4/cxx4/ncGroup.cpp

1378 lines
52 KiB
C++

#include "ncGroup.h"
#include "ncVar.h"
#include "ncDim.h"
#include "ncVlenType.h"
#include "ncCompoundType.h"
#include "ncOpaqueType.h"
#include "ncGroupAtt.h"
#include "ncByte.h"
#include "ncUbyte.h"
#include "ncChar.h"
#include "ncShort.h"
#include "ncUshort.h"
#include "ncInt.h"
#include "ncUint.h"
#include "ncInt64.h"
#include "ncUint64.h"
#include "ncFloat.h"
#include "ncDouble.h"
#include "ncString.h"
#include <ncException.h>
#include "ncCheck.h"
using namespace std;
using namespace netCDF::exceptions;
namespace netCDF {
// Global comparator operator ==============
// comparator operator
bool operator<(const NcGroup& lhs,const NcGroup& rhs)
{
return false;
}
// comparator operator
bool operator>(const NcGroup& lhs,const NcGroup& rhs)
{
return true;
}
}
using namespace netCDF;
/////////////////////////////////////////////
NcGroup::~NcGroup()
{
}
// Constructor generates a null object.
NcGroup::NcGroup() :
nullObject(true)
{}
// constructor
NcGroup::NcGroup(const int groupId) :
nullObject(false),
myId(groupId)
{ }
// assignment operator
NcGroup& NcGroup::operator=(const NcGroup & rhs)
{
nullObject = rhs.nullObject;
myId = rhs.myId;
return *this;
}
// The copy constructor.
NcGroup::NcGroup(const NcGroup& rhs):
nullObject(rhs.nullObject),
myId(rhs.myId)
{}
// equivalence operator
bool NcGroup::operator==(const NcGroup & rhs) const
{
if(nullObject)
return nullObject == rhs.nullObject;
else
return myId == rhs.myId;
}
// != operator
bool NcGroup::operator!=(const NcGroup & rhs) const
{
return !(*this == rhs);
}
// /////////////
// NcGroup-related methods
// /////////////
// Get the group name.
string NcGroup::getName(bool fullName) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getName on a Null group",__FILE__,__LINE__);
string groupName;
if(fullName){
// return full name of group with foward "/" separarating sub-groups.
size_t lenp;
ncCheck(nc_inq_grpname_len(myId,&lenp),__FILE__,__LINE__);
char* charName= new char[lenp+1];
ncCheck(nc_inq_grpname_full(myId,&lenp,charName),__FILE__,__LINE__);
groupName = charName;
delete charName;
}
else {
// return the (local) name of this group.
char charName[NC_MAX_NAME+1];
ncCheck(nc_inq_grpname(myId,charName),__FILE__,__LINE__);
groupName = charName;
}
return groupName;
}
// returns true if this is the root group.
bool NcGroup::isRootGroup() const{
bool result = getName() == "/";
return result;
}
// Get the parent group.
NcGroup NcGroup::getParentGroup() const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getParentGroup on a Null group",__FILE__,__LINE__);
try {
int parentId;
ncCheck(nc_inq_grp_parent(myId,&parentId),__FILE__,__LINE__);
NcGroup ncGroupParent(parentId);
return ncGroupParent;
}
catch (NcEnoGrp& e) {
// no group found, so return null group
return NcGroup();
}
}
// Get the group id.
int NcGroup::getId() const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getId on a Null group",__FILE__,__LINE__);
return myId;
}
// Get the number of NcGroup objects.
int NcGroup::getGroupCount(NcGroup::GroupLocation location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getGroupCount on a Null group",__FILE__,__LINE__);
// initialize group counter
int ngroups=0;
// record this group
if(location == ParentsAndCurrentGrps || location == AllGrps) {
ngroups ++;
}
// number of children in current group
if(location == ChildrenGrps || location == AllChildrenGrps || location == AllGrps ) {
int numgrps;
int* ncids=NULL;
ncCheck(nc_inq_grps(getId(), &numgrps,ncids),__FILE__,__LINE__);
ngroups += numgrps;
}
// search in parent groups
if(location == ParentsGrps || location == ParentsAndCurrentGrps || location == AllGrps ) {
multimap<string,NcGroup> groups(getGroups(ParentsGrps));
ngroups += groups.size();
}
// get the number of all children that are childreof children
if(location == ChildrenOfChildrenGrps || location == AllChildrenGrps || location == AllGrps ) {
multimap<string,NcGroup> groups(getGroups(ChildrenOfChildrenGrps));
ngroups += groups.size();
}
return ngroups;
}
// Get the set of child NcGroup objects.
multimap<std::string,NcGroup> NcGroup::getGroups(NcGroup::GroupLocation location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getGroups on a Null group",__FILE__,__LINE__);
// create a container to hold the NcGroup's.
multimap<string,NcGroup> ncGroups;
// record this group
if(location == ParentsAndCurrentGrps || location == AllGrps) {
ncGroups.insert(pair<const string,NcGroup>(getName(),*this));
}
// the child groups of the current group
if(location == ChildrenGrps || location == AllChildrenGrps || location == AllGrps ) {
// get the number of groups
int groupCount = getGroupCount();
if (groupCount){
vector<int> ncids(groupCount);
int* numgrps=NULL;
// now get the id of each NcGroup and populate the ncGroups container.
ncCheck(nc_inq_grps(myId, numgrps,&ncids[0]),__FILE__,__LINE__);
for(int i=0; i<groupCount;i++){
NcGroup tmpGroup(ncids[i]);
ncGroups.insert(pair<const string,NcGroup>(tmpGroup.getName(),tmpGroup));
}
}
}
// search in parent groups.
if(location == ParentsGrps || location == ParentsAndCurrentGrps || location == AllGrps ) {
NcGroup tmpGroup(*this);
if(!tmpGroup.isRootGroup()) {
while(1) {
const NcGroup parentGroup(tmpGroup.getParentGroup());
if(parentGroup.isNull()) break;
ncGroups.insert(pair<const string,NcGroup>(parentGroup.getName(),parentGroup));
tmpGroup=parentGroup;
}
}
}
// search in child groups of the children
if(location == ChildrenOfChildrenGrps || location == AllChildrenGrps || location == AllGrps ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(ChildrenGrps));
for (it=groups.begin();it!=groups.end();it++) {
multimap<string,NcGroup> childGroups(it->second.getGroups(AllChildrenGrps));
ncGroups.insert(childGroups.begin(),childGroups.end());
}
}
return ncGroups;
}
// Get the named child NcGroup object.
NcGroup NcGroup::getGroup(const string& name,NcGroup::GroupLocation location) const{
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getGroup on a Null group",__FILE__,__LINE__);
multimap<string,NcGroup> ncGroups(getGroups(location));
pair<multimap<string,NcGroup>::iterator,multimap<string,NcGroup>::iterator> ret;
ret = ncGroups.equal_range(name);
if(ret.first == ret.second)
return NcGroup(); // null group is returned
else
return ret.first->second;
}
// Get all NcGroup objects with a given name.
set<NcGroup> NcGroup::getGroups(const std::string& name,NcGroup::GroupLocation location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getGroups on a Null group",__FILE__,__LINE__);
// get the set of ncGroups in this group and above.
multimap<std::string,NcGroup> ncGroups(getGroups(location));
pair<multimap<string,NcGroup>::iterator,multimap<string,NcGroup>::iterator> ret;
multimap<string,NcGroup>::iterator it;
ret = ncGroups.equal_range(name);
set<NcGroup> tmpGroup;
for (it=ret.first; it!=ret.second; ++it) {
tmpGroup.insert(it->second);
}
return tmpGroup;
}
// Add a new child NcGroup object.
NcGroup NcGroup::addGroup(const string& name) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::addGroup on a Null group",__FILE__,__LINE__);
int new_ncid;
ncCheck(nc_def_grp(myId,const_cast<char*> (name.c_str()),&new_ncid),__FILE__,__LINE__);
return NcGroup(new_ncid);
}
// /////////////
// NcVar-related accessors
// /////////////
// Get the number of NcVar objects in this group.
int NcGroup::getVarCount(NcGroup::Location location) const {
// search in current group.
NcGroup tmpGroup(*this);
int nvars=0;
// search in current group
if((location == ParentsAndCurrent || location == ChildrenAndCurrent || location == Current || location ==All) && !tmpGroup.isNull()) {
ncCheck(nc_inq_nvars(tmpGroup.getId(), &nvars),__FILE__,__LINE__);
}
// search recursively in all parent groups.
if(location == Parents || location == ParentsAndCurrent || location ==All) {
tmpGroup=getParentGroup();
while(!tmpGroup.isNull()) {
int nvarsp;
ncCheck(nc_inq_nvars(tmpGroup.getId(), &nvarsp),__FILE__,__LINE__);
nvars += nvarsp;
// continue loop with the parent.
tmpGroup=tmpGroup.getParentGroup();
}
}
// search recursively in all child groups
if(location == ChildrenAndCurrent || location == Children || location == All) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups());
for (it=groups.begin();it!=groups.end();it++) {
nvars += it->second.getVarCount(ChildrenAndCurrent);
}
}
return nvars;
}
// Get the collection of NcVar objects.
multimap<std::string,NcVar> NcGroup::getVars(NcGroup::Location location) const {
// create a container to hold the NcVar's.
multimap<string,NcVar> ncVars;
// search in current group.
NcGroup tmpGroup(*this);
if((location == ParentsAndCurrent || location == ChildrenAndCurrent || location == Current || location ==All) && !tmpGroup.isNull()) {
// get the number of variables.
int varCount = getVarCount();
if (varCount){
// now get the name of each NcVar object and populate the ncVars container.
int* nvars=NULL;
vector<int> varids(varCount);
ncCheck(nc_inq_varids(myId, nvars,&varids[0]),__FILE__,__LINE__);
for(int i=0; i<varCount;i++){
NcVar tmpVar(*this,varids[i]);
ncVars.insert(pair<const string,NcVar>(tmpVar.getName(),tmpVar));
}
}
}
// search recursively in all parent groups.
if(location == Parents || location == ParentsAndCurrent || location ==All) {
tmpGroup=getParentGroup();
while(!tmpGroup.isNull()) {
// get the number of variables
int varCount = tmpGroup.getVarCount();
if (varCount){
// now get the name of each NcVar object and populate the ncVars container.
int* nvars=NULL;
vector<int> varids(varCount);
ncCheck(nc_inq_varids(tmpGroup.getId(), nvars,&varids[0]),__FILE__,__LINE__);
for(int i=0; i<varCount;i++){
NcVar tmpVar(tmpGroup,varids[i]);
ncVars.insert(pair<const string,NcVar>(tmpVar.getName(),tmpVar));
}
}
// continue loop with the parent.
tmpGroup=tmpGroup.getParentGroup();
}
}
// search recusively in all child groups.
if(location == ChildrenAndCurrent || location == Children || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups());
for (it=groups.begin();it!=groups.end();it++) {
multimap<string,NcVar> vars=it->second.getVars(ChildrenAndCurrent);
ncVars.insert(vars.begin(),vars.end());
}
}
return ncVars;
}
// Get all NcVar objects with a given name.
set<NcVar> NcGroup::getVars(const string& name,NcGroup::Location location) const {
// get the set of ncVars in this group and above.
multimap<std::string,NcVar> ncVars(getVars(location));
pair<multimap<string,NcVar>::iterator,multimap<string,NcVar>::iterator> ret;
multimap<string,NcVar>::iterator it;
ret = ncVars.equal_range(name);
set<NcVar> tmpVar;
for (it=ret.first; it!=ret.second; ++it) {
tmpVar.insert(it->second);
}
return tmpVar;
}
// Get the named NcVar object.
NcVar NcGroup::getVar(const string& name,NcGroup::Location location) const {
multimap<std::string,NcVar> ncVars(getVars(location));
pair<multimap<string,NcVar>::iterator,multimap<string,NcVar>::iterator> ret;
ret = ncVars.equal_range(name);
if(ret.first == ret.second)
// no matching netCDF variable found so return null object.
return NcVar();
else
return ret.first->second;
}
// Add a new netCDF variable.
NcVar NcGroup::addVar(const string& name, const string& typeName, const string& dimName) const {
ncCheckDefineMode(myId);
// get an NcType object with the given type name.
NcType tmpType(getType(typeName,NcGroup::ParentsAndCurrent));
if(tmpType.isNull()) throw NcNullType("Attempt to invoke NcGroup::addVar failed: typeName must be defined in either the current group or a parent group",__FILE__,__LINE__);
// get a NcDim object with the given dimension name
NcDim tmpDim(getDim(dimName,NcGroup::ParentsAndCurrent));
if(tmpDim.isNull()) throw NcNullDim("Attempt to invoke NcGroup::addVar failed: dimName must be defined in either the current group or a parent group",__FILE__,__LINE__);
// finally define a new netCDF variable
int varId;
int dimId(tmpDim.getId());
ncCheck(nc_def_var(myId,name.c_str(),tmpType.getId(),1,&dimId,&varId),__FILE__,__LINE__);
// return an NcVar object for this new variable
return NcVar(*this,varId);
}
// Add a new netCDF variable.
NcVar NcGroup::addVar(const string& name, const NcType& ncType, const NcDim& ncDim) const {
ncCheckDefineMode(myId);
// check NcType object is valid
if(ncType.isNull()) throw NcNullType("Attempt to invoke NcGroup::addVar with a Null NcType object",__FILE__,__LINE__);
NcType tmpType(getType(ncType.getName(),NcGroup::ParentsAndCurrent));
if(tmpType.isNull()) throw NcNullType("Attempt to invoke NcGroup::addVar failed: NcType must be defined in either the current group or a parent group",__FILE__,__LINE__);
// check NcDim object is valid
if(ncDim.isNull()) throw NcNullDim("Attempt to invoke NcGroup::addVar with a Null NcDim object",__FILE__,__LINE__);
NcDim tmpDim(getDim(ncDim.getName(),NcGroup::ParentsAndCurrent));
if(tmpDim.isNull()) throw NcNullDim("Attempt to invoke NcGroup::addVar failed: NcDim must be defined in either the current group or a parent group",__FILE__,__LINE__);
// finally define a new netCDF variable
int varId;
int dimId(tmpDim.getId());
ncCheck(nc_def_var(myId,name.c_str(),tmpType.getId(),1,&dimId,&varId),__FILE__,__LINE__);
// return an NcVar object for this new variable
return NcVar(*this,varId);
}
// Add a new netCDF multi-dimensional variable.
NcVar NcGroup::addVar(const string& name, const string& typeName, const vector<string>& dimNames) const {
ncCheckDefineMode(myId);
// get an NcType object with the given name.
NcType tmpType(getType(typeName,NcGroup::ParentsAndCurrent));
if(tmpType.isNull()) throw NcNullType("Attempt to invoke NcGroup::addVar failed: typeName must be defined in either the current group or a parent group",__FILE__,__LINE__);
// get a set of NcDim objects corresponding to the given dimension names.
vector<int> dimIds;
dimIds.reserve(dimNames.size());
for (size_t i=0; i<dimNames.size();i++){
NcDim tmpDim(getDim(dimNames[i],NcGroup::ParentsAndCurrent));
if(tmpDim.isNull()) throw NcNullDim("Attempt to invoke NcGroup::addVar failed: dimNames must be defined in either the current group or a parent group",__FILE__,__LINE__);
dimIds.push_back(tmpDim.getId());
}
// finally define a new netCDF variable
int varId;
int *dimIdsPtr = dimIds.empty() ? 0 : &dimIds[0];
ncCheck(nc_def_var(myId,name.c_str(),tmpType.getId(),dimIds.size(), dimIdsPtr,&varId),__FILE__,__LINE__);
// return an NcVar object for this new variable
return NcVar(*this,varId);
}
// Add a new netCDF multi-dimensional variable.
NcVar NcGroup::addVar(const string& name, const NcType& ncType, const vector<NcDim>& ncDimVector) const {
ncCheckDefineMode(myId);
// check NcType object is valid
if(ncType.isNull()) throw NcNullType("Attempt to invoke NcGroup::addVar with a Null NcType object",__FILE__,__LINE__);
NcType tmpType(getType(ncType.getName(),NcGroup::ParentsAndCurrent));
if(tmpType.isNull()) throw NcNullType("Attempt to invoke NcGroup::addVar failed: NcType must be defined in either the current group or a parent group",__FILE__,__LINE__);
// check NcDim objects are valid
vector<NcDim>::const_iterator iter;
vector<int> dimIds;
dimIds.reserve(ncDimVector.size());
for (iter=ncDimVector.begin();iter < ncDimVector.end(); iter++) {
if(iter->isNull()) throw NcNullDim("Attempt to invoke NcGroup::addVar with a Null NcDim object",__FILE__,__LINE__);
NcDim tmpDim(getDim(iter->getName(),NcGroup::ParentsAndCurrent));
if(tmpDim.isNull()) throw NcNullDim("Attempt to invoke NcGroup::addVar failed: NcDim must be defined in either the current group or a parent group",__FILE__,__LINE__);
dimIds.push_back(tmpDim.getId());
}
// finally define a new netCDF variable
int varId;
int *dimIdsPtr = dimIds.empty() ? 0 : &dimIds[0];
ncCheck(nc_def_var(myId,name.c_str(),tmpType.getId(),dimIds.size(), dimIdsPtr,&varId),__FILE__,__LINE__);
// return an NcVar object for this new variable
return NcVar(*this,varId);
}
// /////////////
// NcAtt-related methods
// /////////////
// Get the number of group attributes.
int NcGroup::getAttCount(NcGroup::Location location) const {
// search in current group.
NcGroup tmpGroup(*this);
int ngatts=0;
// search in current group
if((location == ParentsAndCurrent || location == ChildrenAndCurrent || location == Current || location ==All) && !tmpGroup.isNull()) {
ncCheck(nc_inq_natts(tmpGroup.getId(), &ngatts),__FILE__,__LINE__);
}
// search recursively in all parent groups.
if(location == Parents || location == ParentsAndCurrent || location ==All) {
tmpGroup=getParentGroup();
while(!tmpGroup.isNull()) {
int ngattsp;
ncCheck(nc_inq_natts(tmpGroup.getId(), &ngattsp),__FILE__,__LINE__);
ngatts += ngattsp;
// continue loop with the parent.
tmpGroup=tmpGroup.getParentGroup();
}
}
// search recursively in all child groups
if(location == ChildrenAndCurrent || location == Children || location == All) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups());
for (it=groups.begin();it!=groups.end();it++) {
ngatts += it->second.getAttCount(ChildrenAndCurrent);
}
}
return ngatts;
}
// Get the collection of NcGroupAtt objects.
multimap<std::string,NcGroupAtt> NcGroup::getAtts(NcGroup::Location location) const {
// create a container to hold the NcAtt's.
multimap<string,NcGroupAtt> ncAtts;
// search in current group.
NcGroup tmpGroup(*this);
if((location == ParentsAndCurrent || location == ChildrenAndCurrent || location == Current || location ==All) && !tmpGroup.isNull()) {
// get the number of attributes
int attCount = tmpGroup.getAttCount();
// now get the name of each NcAtt and populate the ncAtts container.
for(int i=0; i<attCount;i++){
char charName[NC_MAX_NAME+1];
ncCheck(nc_inq_attname(tmpGroup.getId(),NC_GLOBAL,i,charName),__FILE__,__LINE__);
NcGroupAtt tmpAtt(tmpGroup.getId(),i);
ncAtts.insert(pair<const string,NcGroupAtt>(string(charName),tmpAtt));
}
}
// search recursively in all parent groups.
if(location == Parents || location == ParentsAndCurrent || location ==All) {
tmpGroup=getParentGroup();
while(!tmpGroup.isNull()) {
// get the number of attributes
int attCount = tmpGroup.getAttCount();
// now get the name of each NcAtt and populate the ncAtts container.
for(int i=0; i<attCount;i++){
char charName[NC_MAX_NAME+1];
ncCheck(nc_inq_attname(tmpGroup.getId(),NC_GLOBAL,i,charName),__FILE__,__LINE__);
NcGroupAtt tmpAtt(tmpGroup.getId(),i);
ncAtts.insert(pair<const string,NcGroupAtt>(string(charName),tmpAtt));
}
// continue loop with the parent.
tmpGroup=tmpGroup.getParentGroup();
}
}
// search recusively in all child groups.
if(location == ChildrenAndCurrent || location == Children || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups());
for (it=groups.begin();it!=groups.end();it++) {
multimap<string,NcGroupAtt> atts=it->second.getAtts(ChildrenAndCurrent);
ncAtts.insert(atts.begin(),atts.end());
}
}
return ncAtts;
}
// Get the named NcGroupAtt object.
NcGroupAtt NcGroup::getAtt(const std::string& name,NcGroup::Location location) const {
multimap<std::string,NcGroupAtt> ncAtts(getAtts(location));
pair<multimap<string,NcGroupAtt>::iterator,multimap<string,NcGroupAtt>::iterator> ret;
ret = ncAtts.equal_range(name);
if(ret.first == ret.second)
// no matching groupAttribute so return null object.
return NcGroupAtt();
else
return ret.first->second;
}
// Get all NcGroupAtt objects with a given name.
set<NcGroupAtt> NcGroup::getAtts(const string& name,NcGroup::Location location) const {
// get the set of ncGroupAtts in this group and above.
multimap<std::string,NcGroupAtt> ncAtts(getAtts(location));
pair<multimap<string,NcGroupAtt>::iterator,multimap<string,NcGroupAtt>::iterator> ret;
multimap<string,NcGroupAtt>::iterator it;
ret = ncAtts.equal_range(name);
set<NcGroupAtt> tmpAtt;
for (it=ret.first; it!=ret.second; ++it) {
tmpAtt.insert(it->second);
}
return tmpAtt;
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const string& dataValues) const {
ncCheckDefineMode(myId);
ncCheck(nc_put_att_text(myId,NC_GLOBAL,name.c_str(),dataValues.size(),dataValues.c_str()),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const unsigned char* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_uchar(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const signed char* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_schar(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, short datumValue) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
else
ncCheck(nc_put_att_short(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, int datumValue) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
else
ncCheck(nc_put_att_int(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, long datumValue) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
else
ncCheck(nc_put_att_long(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, float datumValue) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
else
ncCheck(nc_put_att_float(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, double datumValue) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
else
ncCheck(nc_put_att_double(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, unsigned short datumValue) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
else
ncCheck(nc_put_att_ushort(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, unsigned int datumValue) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
else
ncCheck(nc_put_att_uint(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, long long datumValue) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
else
ncCheck(nc_put_att_longlong(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, unsigned long long datumValue) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
else
ncCheck(nc_put_att_ulonglong(myId,NC_GLOBAL,name.c_str(),type.getId(),1,&datumValue),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const short* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_short(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const int* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_int(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const long* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_long(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const float* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_float(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const double* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_double(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const unsigned short* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_ushort(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const unsigned int* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_uint(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const long long* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_longlong(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const unsigned long long* dataValues) const {
ncCheckDefineMode(myId);
NcType::ncType typeClass(type.getTypeClass());
if(typeClass == NcType::nc_VLEN || typeClass == NcType::nc_OPAQUE || typeClass == NcType::nc_ENUM || typeClass == NcType::nc_COMPOUND)
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
else
ncCheck(nc_put_att_ulonglong(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, size_t len, const char** dataValues) const {
ncCheckDefineMode(myId);
ncCheck(nc_put_att_string(myId,NC_GLOBAL,name.c_str(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// Creates a new NetCDF group attribute or if already exisiting replaces it.
NcGroupAtt NcGroup::putAtt(const string& name, const NcType& type, size_t len, const void* dataValues) const {
ncCheckDefineMode(myId);
ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__);
// finally instantiate this attribute and return
return getAtt(name);
}
// /////////////
// NcDim-related methods
// /////////////
// Get the number of NcDim objects.
int NcGroup::getDimCount(NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getDimCount on a Null group",__FILE__,__LINE__);
// intialize counter
int ndims=0;
// search in current group
if(location == Current || location == ParentsAndCurrent || location == ChildrenAndCurrent || location == All ) {
int ndimsp;
ncCheck(nc_inq_ndims(getId(), &ndimsp),__FILE__,__LINE__);
ndims += ndimsp;
}
// search in parent groups.
if(location == Parents || location == ParentsAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(ParentsGrps));
for (it=groups.begin();it!=groups.end();it++) {
ndims += it->second.getDimCount();
}
}
// search in child groups.
if(location == Children || location == ChildrenAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(AllChildrenGrps));
for (it=groups.begin();it!=groups.end();it++) {
ndims += it->second.getDimCount();
}
}
return ndims;
}
// Get the set of NcDim objects.
multimap<string,NcDim> NcGroup::getDims(NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getDims on a Null group",__FILE__,__LINE__);
// create a container to hold the NcDim's.
multimap<string,NcDim> ncDims;
// search in current group
if(location == Current || location == ParentsAndCurrent || location == ChildrenAndCurrent || location == All ) {
int dimCount = getDimCount();
if (dimCount){
vector<int> dimids(dimCount);
ncCheck(nc_inq_dimids(getId(), &dimCount, &dimids[0], 0),__FILE__,__LINE__);
// now get the name of each NcDim and populate the nDims container.
for(int i=0; i<dimCount;i++){
NcDim tmpDim(*this,dimids[i]);
ncDims.insert(pair<const string,NcDim>(tmpDim.getName(),tmpDim));
}
}
}
// search in parent groups.
if(location == Parents || location == ParentsAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(ParentsGrps));
for (it=groups.begin();it!=groups.end();it++) {
multimap<string,NcDim> dimTmp(it->second.getDims());
ncDims.insert(dimTmp.begin(),dimTmp.end());
}
}
// search in child groups (makes recursive calls).
if(location == Children || location == ChildrenAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(AllChildrenGrps));
for (it=groups.begin();it!=groups.end();it++) {
multimap<string,NcDim> dimTmp(it->second.getDims());
ncDims.insert(dimTmp.begin(),dimTmp.end());
}
}
return ncDims;
}
// Get the named NcDim object.
NcDim NcGroup::getDim(const string& name,NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getDim on a Null group",__FILE__,__LINE__);
multimap<string,NcDim> ncDims(getDims(location));
pair<multimap<string,NcDim>::iterator,multimap<string,NcDim>::iterator> ret;
ret = ncDims.equal_range(name);
if(ret.first == ret.second)
return NcDim(); // null group is returned
else
return ret.first->second;
}
// Get all NcDim objects with a given name.
set<NcDim> NcGroup::getDims(const string& name,NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getDims on a Null group",__FILE__,__LINE__);
// get the set of ncDims in this group and above.
multimap<string,NcDim> ncDims(getDims(location));
pair<multimap<string,NcDim>::iterator,multimap<string,NcDim>::iterator> ret;
multimap<string,NcDim>::iterator it;
ret = ncDims.equal_range(name);
set<NcDim> tmpDim;
for (it=ret.first; it!=ret.second; ++it) {
tmpDim.insert(it->second);
}
return tmpDim;
}
// Add a new NcDim object.
NcDim NcGroup::addDim(const string& name, size_t dimSize) const {
ncCheckDefineMode(myId);
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::addDim on a Null group",__FILE__,__LINE__);
int dimId;
ncCheck(nc_def_dim(myId,name.c_str(),dimSize,&dimId),__FILE__,__LINE__);
// finally return NcDim object for this new variable
return NcDim(*this,dimId);
}
// Add a new NcDim object with unlimited size..
NcDim NcGroup::addDim(const string& name) const {
ncCheckDefineMode(myId);
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::addDim on a Null group",__FILE__,__LINE__);
int dimId;
ncCheck(nc_def_dim(myId,name.c_str(),NC_UNLIMITED,&dimId),__FILE__,__LINE__);
// finally return NcDim object for this new variable
return NcDim(*this,dimId);
}
// /////////////
// type-object related methods
// /////////////
// Gets the number of type objects.
int NcGroup::getTypeCount(NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getTypeCount on a Null group",__FILE__,__LINE__);
// intialize counter
int ntypes=0;
// search in current group
if(location == Current || location == ParentsAndCurrent || location == ChildrenAndCurrent || location == All ) {
int ntypesp;
int* typeidsp=NULL;
ncCheck(nc_inq_typeids(getId(), &ntypesp,typeidsp),__FILE__,__LINE__);
ntypes+= ntypesp;
}
// search in parent groups.
if(location == Parents || location == ParentsAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(ParentsGrps));
for (it=groups.begin();it!=groups.end();it++) {
ntypes += it->second.getTypeCount();
}
}
// search in child groups.
if(location == Children || location == ChildrenAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(AllChildrenGrps));
for (it=groups.begin();it!=groups.end();it++) {
ntypes += it->second.getTypeCount();
}
}
return ntypes;
}
// Gets the number of type objects with a given enumeration type.
int NcGroup::getTypeCount(NcType::ncType enumType, NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getTypeCount on a Null group",__FILE__,__LINE__);
// intialize counter
int ntypes=0;
// search in current group
if(location == Current || location == ParentsAndCurrent || location == ChildrenAndCurrent || location == All ) {
int ntypesp;
int* typeidsp=NULL;
ncCheck(nc_inq_typeids(getId(), &ntypesp,typeidsp),__FILE__,__LINE__);
if (ntypesp){
vector<int> typeids(ntypesp);
ncCheck(nc_inq_typeids(getId(), &ntypesp,&typeids[0]),__FILE__,__LINE__);
for (int i=0; i<ntypesp;i++){
NcType tmpType(*this,typeids[i]);
if(tmpType.getTypeClass() == enumType) ntypes++;
}
}
}
// search in parent groups.
if(location == Parents || location == ParentsAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(ParentsGrps));
for (it=groups.begin();it!=groups.end();it++) {
ntypes += it->second.getTypeCount(enumType);
}
}
// search in child groups.
if(location == Children || location == ChildrenAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(AllChildrenGrps));
for (it=groups.begin();it!=groups.end();it++) {
ntypes += it->second.getTypeCount(enumType);
}
}
return ntypes;
}
// Gets the collection of NcType objects.
multimap<string,NcType> NcGroup::getTypes(NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getTypes on a Null group",__FILE__,__LINE__);
// create a container to hold the NcType's.
multimap<string,NcType> ncTypes;
// search in current group
if(location == Current || location == ParentsAndCurrent || location == ChildrenAndCurrent || location == All ) {
int typeCount = getTypeCount();
if (typeCount){
vector<int> typeids(typeCount);
ncCheck(nc_inq_typeids(getId(), &typeCount,&typeids[0]),__FILE__,__LINE__);
// now get the name of each NcType and populate the nTypes container.
for(int i=0; i<typeCount;i++){
NcType tmpType(*this,typeids[i]);
ncTypes.insert(pair<const string,NcType>(tmpType.getName(),tmpType));
}
}
}
// search in parent groups.
if(location == Parents || location == ParentsAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(ParentsGrps));
for (it=groups.begin();it!=groups.end();it++) {
multimap<string,NcType> typeTmp(it->second.getTypes());
ncTypes.insert(typeTmp.begin(),typeTmp.end());
}
}
// search in child groups (makes recursive calls).
if(location == Children || location == ChildrenAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups(AllChildrenGrps));
for (it=groups.begin();it!=groups.end();it++) {
multimap<string,NcType> typeTmp(it->second.getTypes());
ncTypes.insert(typeTmp.begin(),typeTmp.end());
}
}
return ncTypes;
}
// Gets the collection of NcType objects with a given name.
set<NcType> NcGroup::getTypes(const string& name, NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getTypes on a Null group",__FILE__,__LINE__);
// iterator for the multimap container.
multimap<string,NcType>::iterator it;
// return argument of equal_range: iterators to lower and upper bounds of the range.
pair<multimap<string,NcType>::iterator,multimap<string,NcType>::iterator> ret;
// get the entire collection of types.
multimap<string,NcType> types(getTypes(location));
// define STL set object to hold the result
set<NcType> tmpType;
// get the set of NcType objects with a given name
ret=types.equal_range(name);
for (it=ret.first;it!=ret.second;it++) {
tmpType.insert(it->second);
}
return tmpType;
}
// Gets the collection of NcType objects with a given data type.
set<NcType> NcGroup::getTypes(NcType::ncType enumType, NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getTypes on a Null group",__FILE__,__LINE__);
// iterator for the multimap container.
multimap<string,NcType>::iterator it;
// get the entire collection of types.
multimap<string,NcType> types(getTypes(location));
// define STL set object to hold the result
set<NcType> tmpType;
// get the set of NcType objects with a given data type
for (it=types.begin();it!=types.end();it++) {
if(it->second.getTypeClass() == enumType) {
tmpType.insert(it->second);
}
}
return(tmpType);
}
// Gets the collection of NcType objects with a given name and data type.
set<NcType> NcGroup::getTypes(const string& name, NcType::ncType enumType, NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getTypes on a Null group",__FILE__,__LINE__);
// iterator for the multimap container.
multimap<string,NcType>::iterator it;
// return argument of equal_range: iterators to lower and upper bounds of the range.
pair<multimap<string,NcType>::iterator,multimap<string,NcType>::iterator> ret;
// get the entire collection of types.
multimap<string,NcType> types(getTypes(location));
// define STL set object to hold the result
set<NcType> tmpType;
// get the set of NcType objects with a given name
ret=types.equal_range(name);
for (it=ret.first;it!=ret.second;it++) {
if((*it).second.getTypeClass() == enumType) {
tmpType.insert(it->second);
}
}
return(tmpType);
}
// Gets the NcType object with a given name.
NcType NcGroup::getType(const string& name, NcGroup::Location location) const {
if(isNull()) throw NcNullGrp("Attempt to invoke NcGroup::getType on a Null group",__FILE__,__LINE__);
if(name == "byte" ) return ncByte;
if(name == "ubyte" ) return ncUbyte;
if(name == "char" ) return ncChar;
if(name == "short" ) return ncShort;
if(name == "ushort" ) return ncUshort;
if(name == "int" ) return ncInt;
if(name == "uint" ) return ncUint;
if(name == "int64" ) return ncInt64;
if(name == "uint64" ) return ncUint64;
if(name == "float" ) return ncFloat;
if(name == "double" ) return ncDouble;
if(name == "string" ) return ncString;
// this is a user defined type
// iterator for the multimap container.
multimap<string,NcType>::iterator it;
// return argument of equal_range: iterators to lower and upper bounds of the range.
pair<multimap<string,NcType>::iterator,multimap<string,NcType>::iterator> ret;
// get the entire collection of types.
multimap<string,NcType> types(getTypes(location));
// define STL set object to hold the result
set<NcType> tmpType;
// get the set of NcType objects with a given name
ret=types.equal_range(name);
if(ret.first == ret.second)
return NcType();
else
return ret.first->second;
}
// Adds a new netCDF Enum type.
NcEnumType NcGroup::addEnumType(const string& name,NcEnumType::ncEnumType baseType) const {
ncCheckDefineMode(myId);
nc_type typeId;
ncCheck(nc_def_enum(myId, baseType, name.c_str(), &typeId),__FILE__,__LINE__);
NcEnumType ncTypeTmp(*this,name);
return ncTypeTmp;
}
// Adds a new netCDF Vlen type.
NcVlenType NcGroup::addVlenType(const string& name,NcType& baseType) const {
ncCheckDefineMode(myId);
nc_type typeId;
ncCheck(nc_def_vlen(myId, const_cast<char*>(name.c_str()),baseType.getId(),&typeId),__FILE__,__LINE__);
NcVlenType ncTypeTmp(*this,name);
return ncTypeTmp;
}
// Adds a new netCDF Opaque type.
NcOpaqueType NcGroup::addOpaqueType(const string& name, size_t size) const {
ncCheckDefineMode(myId);
nc_type typeId;
ncCheck(nc_def_opaque(myId, size,const_cast<char*>(name.c_str()), &typeId),__FILE__,__LINE__);
NcOpaqueType ncTypeTmp(*this,name);
return ncTypeTmp;
}
// Adds a new netCDF UserDefined type.
NcCompoundType NcGroup::addCompoundType(const string& name, size_t size) const {
ncCheckDefineMode(myId);
nc_type typeId;
ncCheck(nc_def_compound(myId, size,const_cast<char*>(name.c_str()),&typeId),__FILE__,__LINE__);
NcCompoundType ncTypeTmp(*this,name);
return ncTypeTmp;
}
// Get the collection of coordinate variables.
map<string,NcGroup> NcGroup::getCoordVars(NcGroup::Location location) const {
map<string,NcGroup> coordVars;
// search in current group and parent groups.
NcGroup tmpGroup(*this);
multimap<string,NcDim>::iterator itD;
multimap<string,NcVar>::iterator itV;
while(1) {
// get the collection of NcDim objects defined in this group.
multimap<string,NcDim> dimTmp(tmpGroup.getDims());
multimap<string,NcVar> varTmp(tmpGroup.getVars());
for (itD=dimTmp.begin();itD!=dimTmp.end();itD++) {
string coordName(itD->first);
itV = varTmp.find(coordName);
if(itV != varTmp.end()) {
coordVars.insert(pair<const string,NcGroup>(string(coordName),tmpGroup));
}
}
if(location != ParentsAndCurrent || location != All || tmpGroup.isRootGroup()) {
break;
}
// continue loop with the parent.
tmpGroup=tmpGroup.getParentGroup();
}
// search in child groups (makes recursive calls).
if(location == ChildrenAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups());
for (it=groups.begin();it!=groups.end();it++) {
map<string,NcGroup> coordVarsTmp=getCoordVars(ChildrenAndCurrent);
coordVars.insert(coordVarsTmp.begin(),coordVarsTmp.end());
}
}
return coordVars;
}
// Get the NcDim and NcVar object pair for a named coordinate variables.
void NcGroup::getCoordVar(string& coordVarName, NcDim& ncDim, NcVar& ncVar, NcGroup::Location location) const {
// search in current group and parent groups.
multimap<string,NcDim>::iterator itD;
NcGroup tmpGroup(*this);
multimap<string,NcVar>::iterator itV;
while(1) {
// get the collection of NcDim objects defined in this group.
multimap<string,NcDim> dimTmp(tmpGroup.getDims());
multimap<string,NcVar> varTmp(tmpGroup.getVars());
itD=dimTmp.find(coordVarName);
itV=varTmp.find(coordVarName);
if(itD != dimTmp.end() && itV != varTmp.end()) {
ncDim=itD->second;
ncVar=itV->second;
return;
}
if(location != ParentsAndCurrent || location != All || tmpGroup.isRootGroup()) {
break;
}
// continue loop with the parent.
tmpGroup=tmpGroup.getParentGroup();
}
// search in child groups (makes recursive calls).
if(location == ChildrenAndCurrent || location == All ) {
multimap<string,NcGroup>::iterator it;
multimap<string,NcGroup> groups(getGroups());
for (it=groups.begin();it!=groups.end();it++) {
getCoordVar(coordVarName,ncDim,ncVar,ChildrenAndCurrent);
if(!ncDim.isNull()) break;
}
}
if(ncDim.isNull()) {
// return null objects as no coordinates variables were obtained.
NcDim dimTmp;
NcVar varTmp;
ncDim=dimTmp;
ncVar=varTmp;
return;
}
}