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netcdf-c/nczarr_test
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Dennis Heimbigner 2f0a6d22e9 Fix error where not converting fill data 
re: Github Issue https://github.com/Unidata/netcdf-c/issues/1826

It turns out that the common get code (NC4_get_vars) in libhdf5
(and libnczarr) has an optimization where it does not attempt to
read from the file if the file is all fill values. Rather it
just fills the output buffer with the fill value.  The problem
is that -- in that case -- it forgets that conversion might still be
needed.  So the conversion never occurs and the raw bits of
the fill data are stored directly into the memory space.

Solution: move some code around to properly do the
conversion no matter how the data was obtained.

Added a test cases nc_test4/test_fillonly.sh and
nczarr_test/test_fillonlyz.sh
2020-09-12 14:49:59 -06:00
..
refs
CMakeLists.txt Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
itmeta.c
Makefile.am Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
ref_fillonly.cdl Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
ref_perdimspecs.cdl Fix nccopy -c dim/x to actually use the dim/x value. 2020-09-01 13:44:24 -06:00
ref_t_meta_dim1.cdl
ref_t_meta_var1.cdl
ref_ut_json_build.txt
ref_ut_json_parse.txt
ref_ut_map_create_nz4.cdl
ref_ut_map_create_nzf.cdl Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_map_readdata_nz4.txt
ref_ut_map_readmeta_nz4.txt
ref_ut_map_readmeta_nzf.txt
ref_ut_map_search_nz4.txt Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_map_search_nzf.txt Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_map_write2meta_nz4.cdl
ref_ut_map_write2meta_nzf.cdl Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_map_writedata_nz4.cdl
ref_ut_map_writedata_nzf.cdl Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_map_writemeta_nz4.cdl
ref_ut_map_writemeta_nzf.cdl Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_mapapi_create_nz4.cdl
ref_ut_mapapi_create_nzf.cdl
ref_ut_mapapi_create_s3.cdl
ref_ut_mapapi_data_nz4.cdl Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_mapapi_data_nzf.cdl Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_mapapi_data_s3.cdl
ref_ut_mapapi_meta_nz4.cdl
ref_ut_mapapi_meta_nzf.cdl
ref_ut_mapapi_meta_s3.cdl
ref_ut_mapapi_search_nz4.txt Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_mapapi_search_nzf.txt Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_mapapi_search_s3.txt
ref_ut_proj.txt
ref_ut_testmap_create_nz4.cdl
run_it_test1.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
run_it_test2.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
run_meta_tests.sh
run_unittests.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
run_ut_chunk.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
run_ut_map.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
run_ut_mapapi.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
run_ut_misc.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
test_fillonlyz.sh Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
test_nczarr_utils.h Fix nccopy -c dim/x to actually use the dim/x value. 2020-09-01 13:44:24 -06:00
test_nczarr.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
tst_chunks2.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
tst_chunks3.c Fix nccopy -c dim/x to actually use the dim/x value. 2020-09-01 13:44:24 -06:00
tst_chunks.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
tst_fillonlyz.c Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
tst_nccopyz.sh Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
ut_chunking.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ut_includes.h Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ut_json.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ut_map.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ut_mapapi.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ut_projections.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ut_projtest.h
ut_test.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ut_test.h Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ut_util.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ut_util.h Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
z4dump.c
zhex.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
zisjson.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
zmapio.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
zs3parse.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00