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3ffe7be446
re: Discussion https://github.com/Unidata/netcdf-c/discussions/2214 The primary change is to support so-called "standard filters". A standard filter is one that is defined by the following netcdf-c API: ```` int nc_def_var_XXX(int ncid, int varid, size_t nparams, unsigned* params); int nc_inq_var_XXXX(int ncid, int varid, int* usefilterp, unsigned* params); ```` So for example, zstandard would be a standard filter by defining the functions *nc_def_var_zstandard* and *nc_inq_var_zstandard*. In order to define these functions, we need a new dispatch function: ```` int nc_inq_filter_avail(int ncid, unsigned filterid); ```` This function, combined with the existing filter API can be used to implement arbitrary standard filters using a simple code pattern. Note that I would have preferred that this function return a list of all available filters, but HDF5 does not support that functionality. So this PR implements the dispatch function and implements the following standard functions: + bzip2 + zstandard + blosc Specific test cases are also provided for HDF5 and NCZarr. Over time, other specific standard filters will be defined. ## Primary Changes * Add nc_inq_filter_avail() to netcdf-c API. * Add standard filter implementations to test use of *nc_inq_filter_avail*. * Bump the dispatch table version number and add to all the relevant dispatch tables (libsrc, libsrcp, etc). * Create a program to invoke nc_inq_filter_avail so that it is accessible to shell scripts. * Cleanup szip support to properly support szip when HDF5 is disabled. This involves detecting libsz separately from testing if HDF5 supports szip. * Integrate shuffle and fletcher32 into the existing filter API. This means that, for example, nc_def_var_fletcher32 is now a wrapper around nc_def_var_filter. * Extend the Codec defaulting to allow multiple default shared libraries. ## Misc. Changes * Modify configure.ac/CMakeLists.txt to look for the relevant libraries implementing standard filters. * Modify libnetcdf.settings to list available standard filters (including deflate and szip). * Add CMake test modules to locate libbz2 and libzstd. * Cleanup the HDF5 memory manager function use in the plugins. * remove unused file include//ncfilter.h * remove tests for the HDF5 memory operations e.g. H5allocate_memory. * Add flag to ncdump to force use of _Filter instead of _Deflate or _Shuffle or _Fletcher32. Used for testing.
65 lines
2.5 KiB
CMake
65 lines
2.5 KiB
CMake
# Searches for an installation of the bz2 library. On success, it sets the following variables:
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#
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# Bz2_FOUND Set to true to indicate the bz2 library was found
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# Bz2_INCLUDE_DIRS The directory containing the header file bz2/bz2.h
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# Bz2_LIBRARIES The libraries needed to use the bz2 library
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#
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# To specify an additional directory to search, set Bz2_ROOT.
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#
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# Author: Siddhartha Chaudhuri, 2009
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#
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# Look for the header, first in the user-specified location and then in the system locations
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SET(Bz2_INCLUDE_DOC "The directory containing the header file bz2.h")
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FIND_PATH(Bz2_INCLUDE_DIRS NAMES bz2.h bz2/bz2.h PATHS ${Bz2_ROOT} ${Bz2_ROOT}/include DOC ${Bz2_INCLUDE_DOC} NO_DEFAULT_PATH)
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IF(NOT Bz2_INCLUDE_DIRS) # now look in system locations
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FIND_PATH(Bz2_INCLUDE_DIRS NAMES bzlib.h DOC ${Bz2_INCLUDE_DOC})
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ENDIF(NOT Bz2_INCLUDE_DIRS)
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SET(Bz2_FOUND FALSE)
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IF(Bz2_INCLUDE_DIRS)
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SET(Bz2_LIBRARY_DIRS ${Bz2_INCLUDE_DIRS})
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IF("${Bz2_LIBRARY_DIRS}" MATCHES "/include$")
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# Strip off the trailing "/include" in the path.
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GET_FILENAME_COMPONENT(Bz2_LIBRARY_DIRS ${Bz2_LIBRARY_DIRS} PATH)
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ENDIF("${Bz2_LIBRARY_DIRS}" MATCHES "/include$")
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IF(EXISTS "${Bz2_LIBRARY_DIRS}/lib")
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SET(Bz2_LIBRARY_DIRS ${Bz2_LIBRARY_DIRS}/lib)
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ENDIF(EXISTS "${Bz2_LIBRARY_DIRS}/lib")
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# Find Bz2 libraries
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FIND_LIBRARY(Bz2_DEBUG_LIBRARY NAMES bz2d bz2_d libbz2d libbz2_d libbz2
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PATH_SUFFIXES Debug ${CMAKE_LIBRARY_ARCHITECTURE} ${CMAKE_LIBRARY_ARCHITECTURE}/Debug
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PATHS ${Bz2_LIBRARY_DIRS} NO_DEFAULT_PATH)
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FIND_LIBRARY(Bz2_RELEASE_LIBRARY NAMES bz2 libbz2
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PATH_SUFFIXES Release ${CMAKE_LIBRARY_ARCHITECTURE} ${CMAKE_LIBRARY_ARCHITECTURE}/Release
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PATHS ${Bz2_LIBRARY_DIRS} NO_DEFAULT_PATH)
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SET(Bz2_LIBRARIES )
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IF(Bz2_DEBUG_LIBRARY AND Bz2_RELEASE_LIBRARY)
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SET(Bz2_LIBRARIES debug ${Bz2_DEBUG_LIBRARY} optimized ${Bz2_RELEASE_LIBRARY})
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ELSEIF(Bz2_DEBUG_LIBRARY)
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SET(Bz2_LIBRARIES ${Bz2_DEBUG_LIBRARY})
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ELSEIF(Bz2_RELEASE_LIBRARY)
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SET(Bz2_LIBRARIES ${Bz2_RELEASE_LIBRARY})
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ENDIF(Bz2_DEBUG_LIBRARY AND Bz2_RELEASE_LIBRARY)
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IF(Bz2_LIBRARIES)
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SET(Bz2_FOUND TRUE)
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ENDIF(Bz2_LIBRARIES)
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ENDIF(Bz2_INCLUDE_DIRS)
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IF(Bz2_FOUND)
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# IF(NOT Bz2_FIND_QUIETLY)
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MESSAGE(STATUS "Found Bz2: headers at ${Bz2_INCLUDE_DIRS}, libraries at ${Bz2_LIBRARY_DIRS}")
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MESSAGE(STATUS " library is ${Bz2_LIBRARIES}")
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# ENDIF(NOT Bz2_FIND_QUIETLY)
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ELSE(Bz2_FOUND)
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IF(Bz2_FIND_REQUIRED)
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MESSAGE(FATAL_ERROR "Bz2 library not found")
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ENDIF(Bz2_FIND_REQUIRED)
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ENDIF(Bz2_FOUND)
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