netcdf-c/libdispatch/drc.c
Dennis Heimbigner 59e04ae071 This PR adds EXPERIMENTAL support for accessing data in the
cloud using a variant of the Zarr protocol and storage
format. This enhancement is generically referred to as "NCZarr".

The data model supported by NCZarr is netcdf-4 minus the user-defined
types and the String type. In this sense it is similar to the CDF-5
data model.

More detailed information about enabling and using NCZarr is
described in the document NUG/nczarr.md and in a
[Unidata Developer's blog entry](https://www.unidata.ucar.edu/blogs/developer/en/entry/overview-of-zarr-support-in).

WARNING: this code has had limited testing, so do use this version
for production work. Also, performance improvements are ongoing.
Note especially the following platform matrix of successful tests:

Platform | Build System | S3 support
------------------------------------
Linux+gcc      | Automake     | yes
Linux+gcc      | CMake        | yes
Visual Studio  | CMake        | no

Additionally, and as a consequence of the addition of NCZarr,
major changes have been made to the Filter API. NOTE: NCZarr
does not yet support filters, but these changes are enablers for
that support in the future.  Note that it is possible
(probable?) that there will be some accidental reversions if the
changes here did not correctly mimic the existing filter testing.

In any case, previously filter ids and parameters were of type
unsigned int. In order to support the more general zarr filter
model, this was all converted to char*.  The old HDF5-specific,
unsigned int operations are still supported but they are
wrappers around the new, char* based nc_filterx_XXX functions.
This entailed at least the following changes:
1. Added the files libdispatch/dfilterx.c and include/ncfilter.h
2. Some filterx utilities have been moved to libdispatch/daux.c
3. A new entry, "filter_actions" was added to the NCDispatch table
   and the version bumped.
4. An overly complex set of structs was created to support funnelling
   all of the filterx operations thru a single dispatch
   "filter_actions" entry.
5. Move common code to from libhdf5 to libsrc4 so that it is accessible
   to nczarr.

Changes directly related to Zarr:
1. Modified CMakeList.txt and configure.ac to support both C and C++
   -- this is in support of S3 support via the awd-sdk libraries.
2. Define a size64_t type to support nczarr.
3. More reworking of libdispatch/dinfermodel.c to
   support zarr and to regularize the structure of the fragments
   section of a URL.

Changes not directly related to Zarr:
1. Make client-side filter registration be conditional, with default off.
2. Hack include/nc4internal.h to make some flags added by Ed be unique:
   e.g. NC_CREAT, NC_INDEF, etc.
3. cleanup include/nchttp.h and libdispatch/dhttp.c.
4. Misc. changes to support compiling under Visual Studio including:
   * Better testing under windows for dirent.h and opendir and closedir.
5. Misc. changes to the oc2 code to support various libcurl CURLOPT flags
   and to centralize error reporting.
6. By default, suppress the vlen tests that have unfixed memory leaks; add option to enable them.
7. Make part of the nc_test/test_byterange.sh test be contingent on remotetest.unidata.ucar.edu being accessible.

Changes Left TO-DO:
1. fix provenance code, it is too HDF5 specific.
2020-06-28 18:02:47 -06:00

521 lines
13 KiB
C

/*
Copyright (c) 1998-2018 University Corporation for Atmospheric Research/Unidata
See COPYRIGHT for license information.
*/
#include "config.h"
#ifdef HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifdef HAVE_STDARG_H
#include <stdarg.h>
#endif
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "netcdf.h"
#include "ncbytes.h"
#include "ncuri.h"
#include "ncrc.h"
#include "nclog.h"
#include "ncwinpath.h"
#define RCFILEENV "DAPRCFILE"
#define RTAG ']'
#define LTAG '['
#define TRIMCHARS " \t\r\n"
#undef MEMCHECK
#define MEMCHECK(x) if((x)==NULL) {goto nomem;} else {}
/* Forward */
static char* rcreadline(char** nextlinep);
static void rctrim(char* text);
static void rcorder(NClist* rc);
static int rccompile(const char* path);
static struct NCTriple* rclocate(const char* key, const char* hostport);
static int rcsearch(const char* prefix, const char* rcname, char** pathp);
static void rcfreetriples(NClist* rc);
#ifdef D4DEBUG
static void storedump(char* msg, NClist* triples);
#endif
/* Define default rc files and aliases, also defines search order*/
static const char* rcfilenames[] = {".daprc",".dodsrc",".ncrc",NULL};
/**************************************************/
/* External Entry Points */
static NCRCglobalstate* ncrc_globalstate = NULL;
/* Get global state */
NCRCglobalstate*
ncrc_getglobalstate(void)
{
if(ncrc_globalstate == NULL) {
ncrc_globalstate = calloc(1,sizeof(NCRCglobalstate));
}
return ncrc_globalstate;
}
void
ncrc_freeglobalstate(void)
{
if(ncrc_globalstate != NULL) {
nullfree(ncrc_globalstate->tempdir);
nullfree(ncrc_globalstate->home);
NC_rcclear(&ncrc_globalstate->rcinfo);
free(ncrc_globalstate);
ncrc_globalstate = NULL;
}
}
void
NC_rcclear(NCRCinfo* info)
{
if(info == NULL) return;
nullfree(info->rcfile);
rcfreetriples(info->triples);
}
void
rcfreetriples(NClist* rc)
{
int i;
for(i=0;i<nclistlength(rc);i++) {
NCTriple* t = (NCTriple*)nclistget(rc,i);
nullfree(t->host);
nullfree(t->key);
nullfree(t->value);
free(t);
}
nclistfree(rc);
}
/* locate, read and compile the rc file, if any */
int
NC_rcload(void)
{
int ret = NC_NOERR;
char* path = NULL;
NCRCglobalstate* globalstate = ncrc_getglobalstate();
if(globalstate->rcinfo.ignore) {
nclog(NCLOGDBG,"No .daprc|.dodsrc runtime configuration file specified; continuing");
return (NC_NOERR);
}
if(globalstate->rcinfo.loaded) return (NC_NOERR);
/* locate the configuration files in the following order:
1. specified by NC_set_rcfile
2. set by DAPRCFILE env variable
3. ./<rcfile> (current directory)
4. $HOME/<rcfile>
*/
if(globalstate->rcinfo.rcfile != NULL) { /* always use this */
path = strdup(globalstate->rcinfo.rcfile);
} else if(getenv(RCFILEENV) != NULL && strlen(getenv(RCFILEENV)) > 0) {
path = strdup(getenv(RCFILEENV));
} else {
const char** rcname;
int found = 0;
for(rcname=rcfilenames;!found && *rcname;rcname++) {
ret = rcsearch(".",*rcname,&path);
if(ret == NC_NOERR && path == NULL) /* try $HOME */
ret = rcsearch(globalstate->home,*rcname,&path);
if(ret != NC_NOERR)
goto done;
if(path != NULL)
found = 1;
}
}
if(path == NULL) {
nclog(NCLOGDBG,"No .daprc|.dodsrc runtime configuration file specified; continuing");
} else {
#ifdef D4DEBUG
fprintf(stderr, "RC file: %s\n", path);
#endif
if((ret=rccompile(path))) {
nclog(NCLOGERR, "Error parsing %s\n",path);
goto done;
}
}
done:
globalstate->rcinfo.loaded = 1; /* even if not exists */
nullfree(path);
return (ret);
}
/**
* Locate a triple by property key and host+port (may be null|"")
* If duplicate keys, first takes precedence.
*/
char*
NC_rclookup(const char* key, const char* hostport)
{
struct NCTriple* triple = rclocate(key,hostport);
return (triple == NULL ? NULL : triple->value);
}
/*!
Set the absolute path to use for the rc file.
WARNING: this MUST be called before any other
call in order for this to take effect.
\param[in] rcfile The path to use. If NULL, or "",
then do not use any rcfile.
\retval OC_NOERR if the request succeeded.
\retval OC_ERCFILE if the file failed to load
*/
int
NC_set_rcfile(const char* rcfile)
{
int stat = NC_NOERR;
FILE* f = NULL;
NCRCglobalstate* globalstate = ncrc_getglobalstate();
if(rcfile != NULL && strlen(rcfile) == 0)
rcfile = NULL;
f = NCfopen(rcfile,"r");
if(f == NULL) {
stat = NC_ERCFILE;
goto done;
}
fclose(f);
nullfree(globalstate->rcinfo.rcfile);
globalstate->rcinfo.rcfile = strdup(rcfile);
/* Clear globalstate->rcinfo */
NC_rcclear(&globalstate->rcinfo);
/* (re) load the rcfile and esp the triplestore*/
stat = NC_rcload();
done:
return stat;
}
/**************************************************/
/* RC processing functions */
static char*
rcreadline(char** nextlinep)
{
char* line;
char* p;
line = (p = *nextlinep);
if(*p == '\0') return NULL; /*signal done*/
for(;*p;p++) {
if(*p == '\r' && p[1] == '\n') *p = '\0';
else if(*p == '\n') break;
}
*p++ = '\0'; /* null terminate line; overwrite newline */
*nextlinep = p;
return line;
}
/* Trim TRIMCHARS from both ends of text; */
static void
rctrim(char* text)
{
char* p = text;
size_t len = 0;
int i;
/* locate first non-trimchar */
for(;*p;p++) {
if(strchr(TRIMCHARS,*p) == NULL) break; /* hit non-trim char */
}
memmove(text,p,strlen(p)+1);
len = strlen(text);
/* locate last non-trimchar */
if(len > 0) {
for(i=(len-1);i>=0;i--) {
if(strchr(TRIMCHARS,text[i]) == NULL) {
text[i+1] = '\0'; /* elide trailing trimchars */
break;
}
}
}
}
/* Order the triples: those with urls must be first,
but otherwise relative order does not matter.
*/
static void
rcorder(NClist* rc)
{
int i;
int len = nclistlength(rc);
NClist* tmprc = NULL;
if(rc == NULL || len == 0) return;
tmprc = nclistnew();
/* Copy rc into tmprc and clear rc */
for(i=0;i<len;i++) {
NCTriple* ti = nclistget(rc,i);
nclistpush(tmprc,ti);
}
nclistclear(rc);
/* Two passes: 1) pull triples with host */
for(i=0;i<len;i++) {
NCTriple* ti = nclistget(tmprc,i);
if(ti->host == NULL) continue;
nclistpush(rc,ti);
}
/* pass 2 pull triples without host*/
for(i=0;i<len;i++) {
NCTriple* ti = nclistget(tmprc,i);
if(ti->host != NULL) continue;
nclistpush(rc,ti);
}
#ifdef D4DEBUG
storedump("reorder:",rc);
#endif
nclistfree(tmprc);
}
/* Create a triple store from a file */
static int
rccompile(const char* path)
{
int ret = NC_NOERR;
NClist* rc = NULL;
char* contents = NULL;
NCbytes* tmp = ncbytesnew();
NCURI* uri = NULL;
char* nextline = NULL;
NCRCglobalstate* globalstate = ncrc_getglobalstate();
if((ret=NC_readfile(path,tmp))) {
nclog(NCLOGERR, "Could not open configuration file: %s",path);
goto done;
}
contents = ncbytesextract(tmp);
if(contents == NULL) contents = strdup("");
/* Either reuse or create new */
rc = globalstate->rcinfo.triples;
if(rc != NULL)
rcfreetriples(rc); /* clear out any old data */
else {
rc = nclistnew();
globalstate->rcinfo.triples = rc;
}
nextline = contents;
for(;;) {
char* line;
char* key;
char* value;
size_t llen;
NCTriple* triple;
line = rcreadline(&nextline);
if(line == NULL) break; /* done */
rctrim(line); /* trim leading and trailing blanks */
if(line[0] == '#') continue; /* comment */
if((llen=strlen(line)) == 0) continue; /* empty line */
triple = (NCTriple*)calloc(1,sizeof(NCTriple));
if(triple == NULL) {ret = NC_ENOMEM; goto done;}
if(line[0] == LTAG) {
char* url = ++line;
char* rtag = strchr(line,RTAG);
if(rtag == NULL) {
nclog(NCLOGERR, "Malformed [url] in %s entry: %s",path,line);
free(triple);
continue;
}
line = rtag + 1;
*rtag = '\0';
/* compile the url and pull out the host */
if(uri) ncurifree(uri);
if(ncuriparse(url,&uri)) {
nclog(NCLOGERR, "Malformed [url] in %s entry: %s",path,line);
free(triple);
continue;
}
ncbytesclear(tmp);
ncbytescat(tmp,uri->host);
if(uri->port != NULL) {
ncbytesappend(tmp,':');
ncbytescat(tmp,uri->port);
}
ncbytesnull(tmp);
triple->host = ncbytesextract(tmp);
if(strlen(triple->host)==0)
{free(triple->host); triple->host = NULL;}
}
/* split off key and value */
key=line;
value = strchr(line, '=');
if(value == NULL)
value = line + strlen(line);
else {
*value = '\0';
value++;
}
triple->key = strdup(key);
triple->value = strdup(value);
rctrim(triple->key);
rctrim(triple->value);
#ifdef D4DEBUG
fprintf(stderr,"rc: host=%s key=%s value=%s\n",
(triple->host != NULL ? triple->host : "<null>"),
triple->key,triple->valu);
#endif
nclistpush(rc,triple);
triple = NULL;
}
rcorder(rc);
done:
if(contents) free(contents);
ncurifree(uri);
ncbytesfree(tmp);
return (ret);
}
/**
* (Internal) Locate a triple by property key and host+port (may be null or "").
* If duplicate keys, first takes precedence.
*/
static struct NCTriple*
rclocate(const char* key, const char* hostport)
{
int i,found;
NCRCglobalstate* globalstate = ncrc_getglobalstate();
NClist* rc = globalstate->rcinfo.triples;
NCTriple* triple = NULL;
if(globalstate->rcinfo.ignore)
return NULL;
if(key == NULL || rc == NULL) return NULL;
if(hostport == NULL) hostport = "";
for(found=0,i=0;i<nclistlength(rc);i++) {
int t;
size_t hplen;
triple = (NCTriple*)nclistget(rc,i);
hplen = (triple->host == NULL ? 0 : strlen(triple->host));
if(strcmp(key,triple->key) != 0) continue; /* keys do not match */
/* If the triple entry has no url, then use it
(because we have checked all other cases)*/
if(hplen == 0) {found=1;break;}
/* do hostport match */
t = 0;
if(triple->host != NULL)
t = strcmp(hostport,triple->host);
if(t == 0) {found=1; break;}
}
return (found?triple:NULL);
}
/**
* Locate rc file by searching in directory prefix.
*/
static
int
rcsearch(const char* prefix, const char* rcname, char** pathp)
{
char* path = NULL;
FILE* f = NULL;
size_t plen = (prefix?strlen(prefix):0);
size_t rclen = strlen(rcname);
int ret = NC_NOERR;
size_t pathlen = plen+rclen+1; /*+1 for '/' */
path = (char*)malloc(pathlen+1); /* +1 for nul*/
if(path == NULL) {ret = NC_ENOMEM; goto done;}
strncpy(path,prefix,pathlen);
strncat(path,"/",pathlen);
strncat(path,rcname,pathlen);
/* see if file is readable */
f = fopen(path,"r");
if(f != NULL)
nclog(NCLOGDBG, "Found rc file=%s",path);
done:
if(f == NULL || ret != NC_NOERR) {
nullfree(path);
path = NULL;
}
if(f != NULL)
fclose(f);
if(pathp != NULL)
*pathp = path;
else {
nullfree(path);
path = NULL;
}
return (ret);
}
int
NC_rcfile_insert(const char* key, const char* value, const char* hostport)
{
int ret = NC_NOERR;
/* See if this key already defined */
struct NCTriple* triple = NULL;
NCRCglobalstate* globalstate = ncrc_getglobalstate();
NClist* rc = globalstate->rcinfo.triples;
if(rc == NULL) {
rc = nclistnew();
if(rc == NULL) {ret = NC_ENOMEM; goto done;}
}
triple = rclocate(key,hostport);
if(triple == NULL) {
triple = (NCTriple*)calloc(1,sizeof(NCTriple));
if(triple == NULL) {ret = NC_ENOMEM; goto done;}
triple->key = strdup(key);
triple->value = NULL;
rctrim(triple->key);
triple->host = (hostport == NULL ? NULL : strdup(hostport));
nclistpush(rc,triple);
}
if(triple->value != NULL) free(triple->value);
triple->value = strdup(value);
rctrim(triple->value);
done:
return ret;
}
/* Obtain the count of number of triples */
size_t
NC_rcfile_length(NCRCinfo* info)
{
return nclistlength(info->triples);
}
/* Obtain the ith triple; return NULL if out of range */
NCTriple*
NC_rcfile_ith(NCRCinfo* info, size_t i)
{
if(i >= nclistlength(info->triples))
return NULL;
return (NCTriple*)nclistget(info->triples,i);
}
#ifdef D4DEBUG
static void
storedump(char* msg, NClist* triples)
{
int i;
if(msg != NULL) fprintf(stderr,"%s\n",msg);
if(triples == NULL || nclistlength(triples)==0) {
fprintf(stderr,"<EMPTY>\n");
return;
}
for(i=0;i<nclistlength(triples);i++) {
NCTriple* t = (NCTriple*)nclistget(triples,i);
fprintf(stderr,"\t%s\t%s\t%s\n",
((t->host == NULL || strlen(t->host)==0)?"--":t->host),t->key,t->value);
}
fflush(stderr);
}
#endif