mirror of
https://github.com/Unidata/netcdf-c.git
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59e04ae071
cloud using a variant of the Zarr protocol and storage format. This enhancement is generically referred to as "NCZarr". The data model supported by NCZarr is netcdf-4 minus the user-defined types and the String type. In this sense it is similar to the CDF-5 data model. More detailed information about enabling and using NCZarr is described in the document NUG/nczarr.md and in a [Unidata Developer's blog entry](https://www.unidata.ucar.edu/blogs/developer/en/entry/overview-of-zarr-support-in). WARNING: this code has had limited testing, so do use this version for production work. Also, performance improvements are ongoing. Note especially the following platform matrix of successful tests: Platform | Build System | S3 support ------------------------------------ Linux+gcc | Automake | yes Linux+gcc | CMake | yes Visual Studio | CMake | no Additionally, and as a consequence of the addition of NCZarr, major changes have been made to the Filter API. NOTE: NCZarr does not yet support filters, but these changes are enablers for that support in the future. Note that it is possible (probable?) that there will be some accidental reversions if the changes here did not correctly mimic the existing filter testing. In any case, previously filter ids and parameters were of type unsigned int. In order to support the more general zarr filter model, this was all converted to char*. The old HDF5-specific, unsigned int operations are still supported but they are wrappers around the new, char* based nc_filterx_XXX functions. This entailed at least the following changes: 1. Added the files libdispatch/dfilterx.c and include/ncfilter.h 2. Some filterx utilities have been moved to libdispatch/daux.c 3. A new entry, "filter_actions" was added to the NCDispatch table and the version bumped. 4. An overly complex set of structs was created to support funnelling all of the filterx operations thru a single dispatch "filter_actions" entry. 5. Move common code to from libhdf5 to libsrc4 so that it is accessible to nczarr. Changes directly related to Zarr: 1. Modified CMakeList.txt and configure.ac to support both C and C++ -- this is in support of S3 support via the awd-sdk libraries. 2. Define a size64_t type to support nczarr. 3. More reworking of libdispatch/dinfermodel.c to support zarr and to regularize the structure of the fragments section of a URL. Changes not directly related to Zarr: 1. Make client-side filter registration be conditional, with default off. 2. Hack include/nc4internal.h to make some flags added by Ed be unique: e.g. NC_CREAT, NC_INDEF, etc. 3. cleanup include/nchttp.h and libdispatch/dhttp.c. 4. Misc. changes to support compiling under Visual Studio including: * Better testing under windows for dirent.h and opendir and closedir. 5. Misc. changes to the oc2 code to support various libcurl CURLOPT flags and to centralize error reporting. 6. By default, suppress the vlen tests that have unfixed memory leaks; add option to enable them. 7. Make part of the nc_test/test_byterange.sh test be contingent on remotetest.unidata.ucar.edu being accessible. Changes Left TO-DO: 1. fix provenance code, it is too HDF5 specific.
459 lines
11 KiB
C
459 lines
11 KiB
C
/*
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* Copyright 2018, University Corporation for Atmospheric Research
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* See netcdf/COPYRIGHT file for copying and redistribution conditions.
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*/
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#include "ut_includes.h"
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#undef DEBUG
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#define META1 "/meta1"
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#define META2 "/meta2"
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#define DATA1 "/data1"
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#define DATA1LEN 25
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#define PASS 1
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#define FAIL 0
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#define XFAIL -1
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static const char* metadata1 = "{\n\"foo\": 42,\n\"bar\": \"apples\",\n\"baz\": [1, 2, 3, 4]}";
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static const char* metaarray1 = "{\n\"shape\": [1,2,3],\n\"dtype\": \"<1\"}";
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static char* url = NULL;
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static NCZM_IMPL impl = NCZM_UNDEF;
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static char* keyprefix = NULL; /* Hold, e.g. S3 bucket name */
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/* Forward */
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static void title(const char*);
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static int report(int pf, const char* op, NCZMAP*);
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static int reportx(int pf, const char* tag, const char* op, NCZMAP*);
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static void setkeyprefix(const char* path);
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static char* makekey(const char* key);
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static int simplecreate(void);
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static int simpledelete(void);
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static int simplemeta(void);
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static int simpledata(void);
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static int search(void);
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struct Test tests[] = {
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{"create",simplecreate},
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{"delete",simpledelete},
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{"simplemeta", simplemeta},
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{"simpledata", simpledata},
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{"search", search},
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{NULL,NULL}
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};
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int
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main(int argc, char** argv)
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{
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int stat = NC_NOERR;
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if((stat = ut_init(argc, argv, &options))) goto done;
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if(options.file == NULL && options.output != NULL) options.file = strdup(options.output);
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if(options.output == NULL && options.file != NULL)options.output = strdup(options.file);
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impl = kind2impl(options.kind);
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// if(impl == NCZM_S3) setkeyprefix(options.file);
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url = makeurl(options.file,impl);
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if((stat = runtests((const char**)options.cmds,tests))) goto done;
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done:
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nullfree(url); url = NULL;
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nullfree(keyprefix);
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if(stat) usage(stat);
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return 0;
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}
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/* Do a simple create */
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static int
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simplecreate(void)
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{
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int stat = NC_NOERR;
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NCZMAP* map = NULL;
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char* truekey = NULL;
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title(__func__);
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switch(stat = nczmap_create(impl,url,0,0,NULL,&map)) {
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case NC_NOERR: break; /* already exists */
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case NC_EEMPTY: break; /*created*/
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default: goto done;
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}
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printf("Pass: create: create: %s\n",url);
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truekey = makekey(NCZMETAROOT);
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if((stat = nczmap_defineobj(map, truekey)))
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goto done;
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printf("Pass: create: defineobj: %s\n",truekey);
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/* Do not delete */
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if((stat = nczmap_close(map,0)))
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goto done;
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printf("Pass: create: close\n");
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/* Reopen and see if exists */
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if((stat = nczmap_open(impl,url,0,0,NULL,&map)))
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goto done;
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printf("Pass: create: open: %s\n",url);
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if((stat = nczmap_exists(map,truekey)))
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goto done;
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printf("Pass: create: exists: %s\n",truekey);
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/* close again */
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if((stat = nczmap_close(map,0)))
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goto done;
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printf("Pass: create: close\n");
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done:
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nullfree(truekey);
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return THROW(stat);
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}
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/* Do a simple delete of previously created file */
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static int
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simpledelete(void)
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{
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int stat = NC_NOERR;
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NCZMAP* map = NULL;
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title(__func__);
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switch ((stat = nczmap_open(impl,url,0,0,NULL,&map))) {
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case NC_NOERR:
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report(PASS,"open",map);
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break;
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case NC_EEMPTY:
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{report(XFAIL,"open",map); stat = NC_NOERR; goto done;}
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default:
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{report(FAIL,"open",map); goto done;}
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}
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/* Delete dataset while closing */
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if((stat = nczmap_close(map,1))) goto done;
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report(PASS,"close: delete",map);
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switch ((stat = nczmap_open(impl,url,0,0,NULL,&map))) {
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default:
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case NC_NOERR:
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report(FAIL,"open",map);
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break;
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case NC_EEMPTY:
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report(XFAIL,"open",map);
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stat = NC_NOERR;
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break;
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}
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done:
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return THROW(stat);
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}
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static int
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simplemeta(void)
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{
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int stat = NC_NOERR;
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NCZMAP* map = NULL;
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char* key = NULL;
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char* truekey = NULL;
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size64_t size = 0;
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char* content = NULL;
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title(__func__);
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if((stat = nczmap_open(impl,url,NC_WRITE,0,NULL,&map)))
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goto done;
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report(PASS,"open",map);
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truekey = makekey(NCZMETAROOT);
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if((stat = nczmap_defineobj(map, truekey)))
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goto done;
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report(PASS,".nczarr: def",map);
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free(truekey); truekey = NULL;
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if((stat=nczm_concat(META1,ZARRAY,&key)))
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goto done;
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truekey = makekey(key);
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nullfree(key); key = NULL;
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if((stat = nczmap_defineobj(map, truekey)))
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goto done;
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report(PASS,".zarray: def",map);
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free(truekey); key = NULL;
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truekey = makekey(NCZMETAROOT);
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if((stat = nczmap_write(map, truekey, 0, strlen(metadata1), metadata1)))
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goto done;
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report(PASS,".nczarr: writemetadata",map);
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free(truekey); truekey = NULL;
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if((stat=nczm_concat(META1,ZARRAY,&key)))
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goto done;
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truekey = makekey(key);
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free(key); key = NULL;
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if((stat = nczmap_write(map, truekey, 0, strlen(metaarray1), metaarray1)))
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goto done;
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report(PASS,".zarray: writemetaarray1",map);
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free(truekey); truekey = NULL;
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if((stat = nczmap_close(map,0)))
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goto done;
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report(PASS,"close",map);
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if((stat = nczmap_open(impl,url,0,0,NULL,&map)))
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goto done;
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report(PASS,"re-open",map);
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/* Read previously written */
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truekey = makekey(NCZMETAROOT);
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if((stat = nczmap_exists(map, truekey)))
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goto done;
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report(PASS,".nczarr: exists",map);
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if((stat = nczmap_len(map, truekey, &size)))
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goto done;
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report(PASS,".nczarr: len",map);
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if(size != strlen(metadata1))
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report(FAIL,".nczarr: len verify",map);
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if((content = calloc(1,strlen(metadata1)+1))==NULL)
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{stat = NC_ENOMEM; goto done;}
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if((stat = nczmap_read(map, truekey, 0, strlen(metadata1), content)))
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goto done;
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report(PASS,".nczarr: readmetadata",map);
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free(truekey); truekey = NULL;
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if(memcmp(content,metadata1,size)!=0)
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report(FAIL,".nczarr: content verify",map);
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else report(PASS,".nczarr: content verify",map);
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nullfree(content); content = NULL;
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if((stat=nczm_concat(META1,ZARRAY,&key)))
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goto done;
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truekey = makekey(key);
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nullfree(key); key = NULL;
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if((stat = nczmap_exists(map, truekey)))
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goto done;
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report(PASS,".zarray: exists",map);
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if((stat = nczmap_len(map, truekey, &size)))
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goto done;
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report(PASS,".zarray: len",map);
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if(size != strlen(metaarray1))
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report(FAIL,".zarray: len verify",map);
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content = calloc(1,strlen(metaarray1)+1);
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if((stat = nczmap_read(map, truekey, 0, strlen(metaarray1), content)))
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goto done;
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report(PASS,".zarray: readmeta",map);
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free(truekey); truekey = NULL;
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if(memcmp(content,metaarray1,size)!=0)
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report(FAIL,".zarray: content verify",map);
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else
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report(PASS,".zarray:content verify",map);
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nullfree(content); content = NULL;
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if((stat = nczmap_close(map,0)))
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goto done;
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report(PASS,"close",map);
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done:
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nullfree(content);
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nullfree(truekey);
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nullfree(key);
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return THROW(stat);
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}
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static int
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simpledata(void)
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{
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int stat = NC_NOERR;
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NCZMAP* map = NULL;
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char* truekey = NULL;
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int data1[DATA1LEN];
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int readdata[DATA1LEN];
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int i;
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size64_t totallen, size;
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char* data1p = (char*)&data1[0]; /* byte level version of data1 */
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title(__func__);
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/* Create the data */
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for(i=0;i<DATA1LEN;i++) data1[i] = i;
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totallen = sizeof(int)*DATA1LEN;
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if((stat = nczmap_open(impl,url,NC_WRITE,0,NULL,&map)))
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goto done;
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report(PASS,"open",map);
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truekey = makekey(DATA1);
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if((stat = nczmap_defineobj(map, truekey)))
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goto done;
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report(PASS,DATA1": def",map);
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/* Write in 3 slices */
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for(i=0;i<3;i++) {
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size64_t start, count, third, last;
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third = (totallen+2) / 3; /* round up */
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start = i * third;
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last = start + third;
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if(last > totallen)
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last = totallen;
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count = last - start;
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if((stat = nczmap_write(map, truekey, start, count, &data1p[start])))
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goto done;
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}
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report(PASS,DATA1": write",map);
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if((stat = nczmap_close(map,0)))
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goto done;
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report(PASS,"close",map);
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if((stat = nczmap_open(impl,url,0,0,NULL,&map)))
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goto done;
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report(PASS,"re-open",map);
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/* Read previously written */
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if((stat = nczmap_exists(map, truekey)))
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goto done;
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report(PASS,DATA1":exists",map);
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if((stat = nczmap_len(map, truekey, &size)))
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goto done;
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report(PASS,DATA1": len",map);
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if(size != totallen)
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report(FAIL,DATA1": len verify",map);
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if((stat = nczmap_read(map, truekey, 0, totallen, readdata)))
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goto done;
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report(PASS,DATA1": read",map);
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if(memcmp(data1,readdata,size)!=0)
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report(FAIL,DATA1": content verify",map);
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else report(PASS,DATA1": content verify",map);
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free(truekey); truekey = NULL;
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done:
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/* Do not delete so we can look at it with ncdump */
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if((stat = nczmap_close(map,0)))
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goto done;
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nullfree(truekey);
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return THROW(stat);
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}
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static int
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searchR(NCZMAP* map, int depth, const char* prefix, NClist* objects)
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{
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int i,stat = NC_NOERR;
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NClist* matches = nclistnew();
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/* add this prefix to object list */
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nclistpush(objects,strdup(prefix));
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/* get next level object keys **below** the prefix */
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if((stat = nczmap_search(map, prefix, matches)))
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goto done;
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reportx(PASS,prefix,"search",map);
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for(i=0;i<nclistlength(matches);i++) {
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const char* key = nclistget(matches,i);
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if((stat = searchR(map,depth+1,key,objects))) goto done;
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if(stat != NC_NOERR)
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goto done;
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}
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done:
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nclistfreeall(matches);
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return stat;
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}
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static int
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search(void)
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{
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int i,stat = NC_NOERR;
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NCZMAP* map = NULL;
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NClist* objects = nclistnew();
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if((stat = nczmap_open(impl,url,0,0,NULL,&map)))
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goto done;
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report(PASS,"open",map);
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/* Do a recursive search on root to get all object keys */
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if((stat=searchR(map,0,"/",objects)))
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goto done;
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/* Print out the list */
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for(i=0;i<nclistlength(objects);i++) {
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const char* key = nclistget(objects,i);
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printf("[%d] %s\n",i,key);
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}
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done:
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/* Do not delete so later tests can use it */
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(void)nczmap_close(map,0);
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report(PASS,"close",map);
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nclistfreeall(objects);
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return THROW(stat);
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}
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#if 0
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/* S3 requires knowledge of the bucket+dataset root in order to create the true key */
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static void
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setkeyprefix(const char* file)
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{
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NCURI* uri = NULL;
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NClist* segments = NULL;
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assert(impl == NCZM_S3);
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ncuriparse(file,&uri);
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/* verify that this could be an S3 url */
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if(uri == NULL) return; /* oh well */
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if(strcmp(uri->protocol,"file")==0) return;
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segments = nclistnew();
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nczm_split_delim(uri->path,'/',segments);
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/* Extract the first two segments */
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if(nclistlength(segments) < 1) return; /* not enough to qualify */
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/* Remove the bucket */
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{ char* s = nclistremove(segments,0);
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nullfree(s); /* do not nest because arg is eval'd twice */
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}
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nczm_join(segments,&keyprefix);
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nclistfreeall(segments);
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ncurifree(uri);
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}
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#endif
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static char*
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makekey(const char* key)
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{
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char* truekey = NULL;
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nczm_concat(keyprefix,key,&truekey);
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return truekey;
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}
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static void
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title(const char* func)
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{
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printf("testing: %s:\n",func);
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fflush(stdout);
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}
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static int
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reportx(int pf, const char* tag, const char* op, NCZMAP* map)
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{
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char s[4096];
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snprintf(s,sizeof(s),"%s: %s",tag,op);
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return report(pf,s,map);
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}
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static int
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report(int pf, const char* op, NCZMAP* map)
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{
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const char* result;
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switch (pf) {
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case PASS: result = "Pass"; break;
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case XFAIL: result = "XFail"; break;
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case FAIL: default: result = "Fail"; break;
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}
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fprintf(stderr,"%s: %s\n",result,op);
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fflush(stderr);
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if(pf == FAIL) {
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if(map) (void)nczmap_close(map,0);
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exit(1);
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}
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return NC_NOERR;
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}
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