mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-11-21 03:13:42 +08:00
ec5b3f9a4f
This is a follow-on to pull request ````https://github.com/Unidata/netcdf-c/pull/1959````, which fixed up type scoping. The primary changes are to _nc\_inq\_dimid()_ and to ncdump. The _nc\_inq\_dimid()_ function is supposed to allow the name to be and FQN, but this apparently never got implemented. So if was modified to support FQNs. The ncdump program is supposed to output fully qualified dimension names in its generated CDL file under certain conditions. Suppose ncdump has a netcdf-4 file F with variable V, and V's parent group is G. For each dimension id D referenced by V, ncdump needs to determine whether to print its name as a simple name or as a fully qualified name (FQN). The algorithm is as follows: 1. Search up the tree of ancestor groups. 2. If one of those ancestor groups contains the dimid, then call it dimgrp. 3. If one of those ancestor groups contains a dim with the same name as the dimid, but with a different dimid, then record that as duplicate=true. 4. If dimgrp is defined and duplicate == false, then we do not need an fqn. 5. If dimgrp is defined and duplicate == true, then we do need an fqn to avoid incorrectly using the duplicate. 6. If dimgrp is undefined, then do a preorder breadth-first search of all the groups looking for the dimid. 7. If found, then use the fqn of the first found such dimension location. 8. If not found, then fail. Test case ncdump/test_scope.sh was modified to test the proper operation of ncdump and _nc\_inq\_dimid()_. Misc. Other Changes: * Fix nc_inq_ncid (NC4_inq_ncid actually) to return root group id if the name argument is NULL. * Modify _ncdump/printfqn_ to print out a dimid FQN; this supports verification that the resulting .nc files were properly created.
224 lines
9.1 KiB
Makefile
224 lines
9.1 KiB
Makefile
## This is a automake file, part of Unidata's netCDF package.
|
|
# Copyright 2018, see the COPYRIGHT file for more information.
|
|
# This file builds and runs the ncdump program.
|
|
|
|
# Ed Hartnett, Dennis Heimbigner, Ward Fisher
|
|
|
|
#SH_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
|
|
#sh_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
|
|
#LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
|
|
#TESTS_ENVIRONMENT += export SETX=1;
|
|
|
|
# Put together AM_CPPFLAGS and AM_LDFLAGS.
|
|
include $(top_srcdir)/lib_flags.am
|
|
LDADD = ${top_builddir}/liblib/libnetcdf.la
|
|
noinst_PROGRAMS=
|
|
# Note which tests depend on other tests. Necessary for make -j check.
|
|
TEST_EXTENSIONS = .sh
|
|
XFAIL_TESTS=""
|
|
|
|
if ! ENABLE_UNFIXED_MEMORY_LEAKS
|
|
AM_TESTS_ENVIRONMENT += export NC_VLEN_NOTEST=1;
|
|
endif
|
|
|
|
# This is the program we're building, and it's sources.
|
|
bin_PROGRAMS = ncdump
|
|
ncdump_SOURCES = ncdump.c vardata.c dumplib.c indent.c nctime0.c \
|
|
ncdump.h vardata.h dumplib.h indent.h nctime0.h cdl.h utils.h \
|
|
utils.c nciter.h nciter.c nccomps.h
|
|
|
|
# Another utility program that copies any netCDF file using only the
|
|
# netCDF API
|
|
bin_PROGRAMS += nccopy
|
|
nccopy_SOURCES = nccopy.c nciter.c nciter.h chunkspec.h chunkspec.c \
|
|
utils.h utils.c dimmap.h dimmap.c list.c list.h
|
|
|
|
# Wei-keng Liao's (wkliao@eecs.northwestern.edu)
|
|
# netcdf-3 validator program
|
|
# (https://github.com/Parallel-NetCDF/PnetCDF/blob/master/src/utils/ncvalidator/ncvalidator.c)
|
|
# that prints out the structure of a netcdf-3 file.
|
|
# This program is built but not installed.
|
|
noinst_PROGRAMS += ncvalidator
|
|
ncvalidator_SOURCES = ncvalidator.c
|
|
|
|
# A simple netcdf-4 metadata -> xml printer. Do not install.
|
|
if USE_HDF5
|
|
bin_PROGRAMS += nc4print
|
|
noinst_PROGRAMS += nc4print
|
|
nc4print_SOURCES = nc4print.c nc4printer.c
|
|
|
|
# Create a helper program for tst_scope.sh
|
|
# Program prints out the fqn of the type of
|
|
# a specified variable in the .nc file.
|
|
noinst_PROGRAMS += printfqn
|
|
printfqn_SOURCES = printfqn.c
|
|
|
|
endif
|
|
|
|
# Conditionally build the ocprint program, but do not install
|
|
if ENABLE_DAP
|
|
bin_PROGRAMS += ocprint
|
|
noinst_PROGRAMS += ocprint
|
|
ocprint_SOURCES = ocprint.c
|
|
endif
|
|
|
|
# This is the man page.
|
|
man_MANS = ncdump.1 nccopy.1
|
|
|
|
if BUILD_TESTSETS
|
|
# C programs needed by shell scripts for classic tests.
|
|
check_PROGRAMS = rewrite-scalar ref_ctest ref_ctest64 ncdump tst_utf8 \
|
|
bom tst_dimsizes nctrunc tst_rcmerge
|
|
|
|
# Tests for classic and 64-bit offset files.
|
|
TESTS = tst_inttags.sh run_tests.sh tst_64bit.sh ref_ctest \
|
|
ref_ctest64 tst_output.sh tst_lengths.sh tst_calendars.sh \
|
|
run_utf8_tests.sh tst_nccopy3.sh tst_nccopy3_subset.sh \
|
|
tst_charfill.sh tst_iter.sh tst_formatx3.sh tst_bom.sh \
|
|
tst_dimsizes.sh run_ncgen_tests.sh tst_ncgen4_classic.sh test_radix.sh test_rcmerge.sh
|
|
|
|
# The tst_nccopy3.sh test uses output from a bunch of other
|
|
# tests. This records the dependency so parallel builds work.
|
|
tst_nccopy3.log: tst_calendars.log run_utf8_tests.log tst_output.log \
|
|
tst_64bit.log run_tests.log tst_lengths.log
|
|
|
|
TESTS += tst_null_byte_padding.sh
|
|
if USE_STRICT_NULL_BYTE_HEADER_PADDING
|
|
XFAIL_TESTS += tst_null_byte_padding.sh
|
|
endif
|
|
|
|
if ! ISCYGWIN
|
|
TESTS += test_unicode_directory.sh test_unicode_path.sh
|
|
endif
|
|
|
|
if LARGE_FILE_TESTS
|
|
TESTS += tst_iter.sh
|
|
endif
|
|
|
|
if USE_HDF5
|
|
# HDF5 has some extra C programs to build. These will be run by
|
|
# the shell script tests.
|
|
check_PROGRAMS += tst_fileinfo tst_create_files tst_h_rdc0 \
|
|
tst_group_data tst_enum_data tst_opaque_data tst_string_data \
|
|
tst_vlen_data tst_comp tst_comp2 tst_nans tst_special_atts \
|
|
tst_unicode tst_fillbug tst_compress tst_chunking tst_h_scalar
|
|
|
|
check_PROGRAMS += tst_vlen_demo
|
|
|
|
# Tests for netCDF-4 behavior.
|
|
TESTS += tst_fileinfo.sh tst_hdf5_offset.sh tst_inttags4.sh \
|
|
tst_netcdf4.sh tst_fillbug.sh tst_netcdf4_4.sh tst_nccopy4.sh \
|
|
tst_nccopy5.sh tst_grp_spec.sh tst_mud.sh tst_h_scalar.sh tst_formatx4.sh \
|
|
run_utf8_nc4_tests.sh run_back_comp_tests.sh run_ncgen_nc4_tests.sh \
|
|
tst_ncgen4.sh test_scope.sh
|
|
|
|
# Record interscript dependencies so parallel builds work.
|
|
tst_nccopy4.log: run_ncgen_tests.log tst_output.log tst_ncgen4.log \
|
|
tst_fillbug.log tst_netcdf4_4.log tst_h_scalar.log
|
|
tst_nccopy5.log: tst_nccopy4.log
|
|
endif #!USE_HDF5
|
|
|
|
TESTS += tst_inmemory_nc3.sh tst_nccopy_w3.sh
|
|
if USE_HDF5
|
|
TESTS += tst_inmemory_nc4.sh tst_nccopy_w4.sh
|
|
endif
|
|
|
|
if USE_HDF5
|
|
# Re-activate the ncgen -lc tests
|
|
TESTS += tst_ctests.sh
|
|
endif
|
|
|
|
if ENABLE_CDF5
|
|
# Test for keywords as identifiers
|
|
TESTS += test_keywords.sh
|
|
endif
|
|
|
|
endif BUILD_TESTSETS
|
|
|
|
# These files all have to be included with the distribution.
|
|
EXTRA_DIST = run_tests.sh tst_64bit.sh tst_output.sh test0.cdl \
|
|
ref_ctest1_nc4.cdl ref_ctest1_nc4c.cdl ref_tst_solar_1.cdl \
|
|
ref_tst_solar_2.cdl tst_netcdf4.sh tst_netcdf4_4.sh ref_tst_small.cdl \
|
|
tst_lengths.sh tst_ncml.cdl ref1.ncml ref_tst_group_data.cdl \
|
|
ref_tst_enum_data.cdl ref_tst_opaque_data.cdl ref_tst_string_data.cdl \
|
|
ref_tst_vlen_data.cdl ref_tst_comp.cdl ref_tst_unicode.cdl \
|
|
ref_tst_nans.cdl small.cdl small2.cdl $(man_MANS) run_utf8_tests.sh \
|
|
ref_tst_utf8.cdl ref_tst_fillbug.cdl tst_fillbug.sh tst_calendars.cdl \
|
|
tst_calendars.sh ref_times.cdl ref_tst_special_atts.cdl \
|
|
ref_tst_noncoord.cdl ref_tst_compounds2.nc ref_tst_compounds2.cdl \
|
|
ref_tst_compounds3.nc ref_tst_compounds3.cdl ref_tst_compounds4.nc \
|
|
ref_tst_compounds4.cdl ref_tst_group_data_v23.cdl tst_mslp.cdl \
|
|
tst_bug321.cdl ref_tst_format_att.cdl ref_tst_format_att_64.cdl \
|
|
tst_nccopy3.sh tst_nccopy4.sh tst_nccopy5.sh \
|
|
ref_nc_test_netcdf4_4_0.nc run_back_comp_tests.sh \
|
|
ref_nc_test_netcdf4.cdl ref_tst_special_atts3.cdl tst_brecs.cdl \
|
|
ref_tst_grp_spec0.cdl ref_tst_grp_spec.cdl tst_grp_spec.sh \
|
|
ref_tst_charfill.cdl tst_charfill.cdl tst_charfill.sh tst_iter.sh \
|
|
tst_mud.sh ref_tst_mud4.cdl ref_tst_mud4-bc.cdl \
|
|
ref_tst_mud4_chars.cdl inttags.cdl inttags4.cdl ref_inttags.cdl \
|
|
ref_inttags4.cdl ref_tst_ncf213.cdl tst_h_scalar.sh \
|
|
run_utf8_nc4_tests.sh tst_formatx3.sh tst_formatx4.sh \
|
|
ref_tst_utf8_4.cdl ref_tst_nc4_utf8_4.cdl tst_inttags.sh \
|
|
tst_inttags4.sh CMakeLists.txt tst_bom.sh tst_inmemory_nc3.sh \
|
|
tst_dimsizes.sh tst_inmemory_nc4.sh tst_fileinfo.sh \
|
|
run_ncgen_tests.sh ref_test_360_day_1900.nc ref_test_365_day_1900.nc \
|
|
ref_test_366_day_1900.nc ref_test_360_day_1900.cdl \
|
|
ref_test_365_day_1900.cdl ref_test_366_day_1900.cdl \
|
|
tst_hdf5_offset.sh run_ncgen_nc4_tests.sh tst_nccopy3_subset.sh \
|
|
ref_nccopy3_subset.nc ref_test_corrupt_magic.nc tst_ncgen_shared.sh \
|
|
tst_ncgen4.sh tst_ncgen4_classic.sh tst_ncgen4_diff.sh \
|
|
tst_ncgen4_cycle.sh tst_null_byte_padding.sh \
|
|
ref_null_byte_padding_test.nc ref_tst_irish_rover.nc \
|
|
ref_provenance_v1.nc ref_tst_radix.cdl tst_radix.cdl test_radix.sh \
|
|
ref_nccopy_w.cdl tst_nccopy_w3.sh tst_nccopy_w4.sh \
|
|
ref_no_ncproperty.nc test_unicode_directory.sh test_unicode_path.sh \
|
|
ref_roman_szip_simple.cdl ref_roman_szip_unlim.cdl ref_tst_perdimspecs.cdl \
|
|
test_keywords.sh ref_keyword1.cdl ref_keyword2.cdl ref_keyword3.cdl ref_keyword4.cdl \
|
|
ref_tst_nofilters.cdl test_scope.sh \
|
|
test_rcmerge.sh ref_rcmerge1.txt ref_rcmerge2.txt ref_rcmerge3.txt \
|
|
scope_ancestor_only.cdl scope_ancestor_subgroup.cdl scope_group_only.cdl scope_preorder.cdl
|
|
|
|
# The L512.bin file is file containing exactly 512 bytes each of value 0.
|
|
# It is used for creating hdf5 files with varying offsets for testing.
|
|
EXTRA_DIST += L512.bin
|
|
|
|
EXTRA_DIST += tst_ctests.sh ref_ctest_small_3.c ref_ctest_small_4.c \
|
|
ref_ctest_special_atts_4.c
|
|
|
|
# CDL files and Expected results
|
|
SUBDIRS = cdl expected
|
|
|
|
CLEANFILES = tst_*.nc tmp*.nc test*.nc iter.* tmp*.cdl tmp*.txt \
|
|
tst_output_*.cdl tst_output_*.c tst_utf8_*.cdl *.tmp tst_tst8.cdl \
|
|
tst_netcdf4_*.cdl test1_ncdump.cdl test2_ncdump.cdl test1.cdl \
|
|
ctest1.cdl test1_cdf5.cdl test2_cdf5.cdl test1_offset.cdl \
|
|
test2_offset.cdl ctest0.nc ctest0_64.nc c1.cdl c1_4.cdl ctest1_64.cdl \
|
|
c0.nc c0_4.nc small.nc small2.nc c0tmp.nc c1.ncml utf8.cdl \
|
|
utf8_64.cdl utf8.nc utf8_64.nc nc4_utf8.cdl nc4_utf8.nc \
|
|
tst_unicode.cdl tst_group_data.cdl tst_compounds2.cdl tst_comp.cdl \
|
|
tst_enum_data.cdl tst_small.cdl tst_times.cdl tst_solar_2.cdl \
|
|
tst_string_data.cdl tst_fillbug.cdl tst_opaque_data.cdl \
|
|
tst_compounds4.cdl tst_utf8.cdl tst_compounds3.cdl \
|
|
tst_special_atts.cdl tst_nans.cdl tst_format_att_64.cdl \
|
|
tst_vlen_data.cdl tst_solar_1.cdl tst_format_att.cdl \
|
|
tst_nc_test_netcdf4_4_0.cdl tst_mud4.cdl tst_mud4-bc.cdl \
|
|
tst_ncf213.cdl tst_h_scalar.cdl tst_mud4_chars.cdl inttags.nc \
|
|
inttags4.nc tst_inttags.cdl tst_inttags4.cdl nc4_fileinfo.nc \
|
|
hdf5_fileinfo.hdf nccopy3_subset_out.nc c5.nc \
|
|
compound_datasize_test.nc compound_datasize_test2.nc ncf199.nc \
|
|
tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl \
|
|
tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl \
|
|
tst_ncf199.cdl tst_tst_gattenum.cdl tst_tst_usuffix.cdl ctest.c \
|
|
ctest64.c nccopy3_subset_out.nc camrun.c tst_ncf213.cdl tst_ncf213.nc \
|
|
tst_radix.nc tmp_radix.cdl ctest_small_3.c ctest_small_4.c \
|
|
ctest_special_atts_4.c tst_roman_szip_simple.cdl \
|
|
tst_roman_szip_unlim.cdl tst_perdimpspecs.nc tmppds.* \
|
|
keyword1.nc keyword2.nc keyword3.nc keyword4.nc \
|
|
tmp_keyword1.cdl tmp_keyword2.cdl tmp_keyword3.cdl tmp_keyword4.cdl \
|
|
type_*.nc copy_type_*.cdl \
|
|
scope_*.nc copy_scope_*.cdl
|
|
|
|
# Remove directories
|
|
clean-local:
|
|
rm -fr rcmergedir
|