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25f062528b
The file docs/indexing.dox tries to provide design information for the refactoring. The primary change is to replace all walking of linked lists with the use of the NCindex data structure. Ncindex is a combination of a hash table (for name-based lookup) and a vector (for walking the elements in the index). Additionally, global vectors are added to NC_HDF5_FILE_INFO_T to support direct mapping of an e.g. dimid to the NC_DIM_INFO_T object. These global vectors exist for dimensions, types, and groups because they have globally unique id numbers. WARNING: 1. since libsrc4 and libsrchdf4 share code, there are also changes in libsrchdf4. 2. Any outstanding pull requests that change libsrc4 or libhdf4 are likely to cause conflicts with this code. 3. The original reason for doing this was for performance improvements, but as noted elsewhere, this may not be significant because the meta-data read performance apparently is being dominated by the hdf5 library because we do bulk meta-data reading rather than lazy reading.
519 lines
9.9 KiB
C
519 lines
9.9 KiB
C
/*
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* Copyright 1996, University Corporation for Atmospheric Research
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* See netcdf/COPYRIGHT file for copying and redistribution conditions.
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*/
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/* $Id: dim.c,v 1.83 2010/05/25 17:54:15 dmh Exp $ */
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#if HAVE_CONFIG_H
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#include <config.h>
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#endif
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#include "nc3internal.h"
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#include <stdlib.h>
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#include <string.h>
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#include <assert.h>
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#include "ncx.h"
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#include "fbits.h"
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#include "ncutf8.h"
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/*
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* Free dim
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* Formerly
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NC_free_dim(dim)
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*/
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void
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free_NC_dim(NC_dim *dimp)
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{
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if(dimp == NULL)
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return;
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free_NC_string(dimp->name);
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free(dimp);
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}
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NC_dim *
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new_x_NC_dim(NC_string *name)
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{
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NC_dim *dimp;
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dimp = (NC_dim *) malloc(sizeof(NC_dim));
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if(dimp == NULL)
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return NULL;
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dimp->name = name;
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dimp->size = 0;
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return(dimp);
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}
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/*
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* Formerly
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NC_new_dim(const char *uname, long size)
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*/
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static NC_dim *
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new_NC_dim(const char *uname, size_t size)
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{
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NC_string *strp;
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NC_dim *dimp = NULL;
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int stat = NC_NOERR;
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char* name = NULL;
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stat = nc_utf8_normalize((const unsigned char *)uname,(unsigned char **)&name);
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if(stat != NC_NOERR)
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goto done;
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strp = new_NC_string(strlen(name), name);
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if(strp == NULL)
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{stat = NC_ENOMEM; goto done;}
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dimp = new_x_NC_dim(strp);
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if(dimp == NULL)
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{
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free_NC_string(strp);
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goto done;
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}
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dimp->size = size;
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done:
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if(name) free(name);
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return (dimp);
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}
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static NC_dim *
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dup_NC_dim(const NC_dim *dimp)
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{
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return new_NC_dim(dimp->name->cp, dimp->size);
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}
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/*
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* Step thru NC_DIMENSION array, seeking the UNLIMITED dimension.
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* Return dimid or -1 on not found.
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* *dimpp is set to the appropriate NC_dim.
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* The loop structure is odd. In order to parallelize,
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* we moved a clearer 'break' inside the loop body to the loop test.
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*/
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int
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find_NC_Udim(const NC_dimarray *ncap, NC_dim **dimpp)
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{
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assert(ncap != NULL);
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if(ncap->nelems == 0)
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return -1;
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{
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int dimid = 0;
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NC_dim **loc = ncap->value;
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for(; (size_t) dimid < ncap->nelems
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&& (*loc)->size != NC_UNLIMITED; dimid++, loc++)
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{
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/*EMPTY*/
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}
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if(dimid >= ncap->nelems)
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return(-1); /* not found */
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/* else, normal return */
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if(dimpp != NULL)
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*dimpp = *loc;
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return dimid;
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}
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}
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/*
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* Step thru NC_DIMENSION array, seeking match on uname.
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* Return dimid or -1 on not found.
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* *dimpp is set to the appropriate NC_dim.
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* The loop structure is odd. In order to parallelize,
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* we moved a clearer 'break' inside the loop body to the loop test.
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*/
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static int
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NC_finddim(const NC_dimarray *ncap, const char *uname, NC_dim **dimpp)
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{
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int dimid = -1;
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char *name = NULL;
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uintptr_t data;
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assert(ncap != NULL);
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if(ncap->nelems == 0)
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goto done;
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/* normalized version of uname */
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if(nc_utf8_normalize((const unsigned char *)uname,(unsigned char **)&name))
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goto done;
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if(NC_hashmapget(ncap->hashmap, name, strlen(name), &data) == 0)
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goto done;
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dimid = (int)data;
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if(dimpp) *dimpp = ncap->value[dimid];
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done:
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if(name) free(name);
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return dimid;
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}
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/* dimarray */
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/*
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* Free the stuff "in" (referred to by) an NC_dimarray.
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* Leaves the array itself allocated.
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*/
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void
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free_NC_dimarrayV0(NC_dimarray *ncap)
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{
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assert(ncap != NULL);
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if(ncap->nelems == 0)
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return;
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assert(ncap->value != NULL);
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{
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NC_dim **dpp = ncap->value;
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NC_dim *const *const end = &dpp[ncap->nelems];
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for( /*NADA*/; dpp < end; dpp++)
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{
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free_NC_dim(*dpp);
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*dpp = NULL;
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}
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}
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ncap->nelems = 0;
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}
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/*
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* Free NC_dimarray values.
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* formerly
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NC_free_array()
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*/
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void
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free_NC_dimarrayV(NC_dimarray *ncap)
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{
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assert(ncap != NULL);
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if(ncap->nalloc == 0)
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return;
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NC_hashmapfree(ncap->hashmap);
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ncap->hashmap = NULL;
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assert(ncap->value != NULL);
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free_NC_dimarrayV0(ncap);
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free(ncap->value);
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ncap->value = NULL;
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ncap->nalloc = 0;
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}
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int
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dup_NC_dimarrayV(NC_dimarray *ncap, const NC_dimarray *ref)
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{
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int status = NC_NOERR;
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assert(ref != NULL);
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assert(ncap != NULL);
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if(ref->nelems != 0)
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{
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const size_t sz = ref->nelems * sizeof(NC_dim *);
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ncap->value = (NC_dim **) malloc(sz);
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if(ncap->value == NULL)
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return NC_ENOMEM;
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(void) memset(ncap->value, 0, sz);
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ncap->nalloc = ref->nelems;
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}
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ncap->nelems = 0;
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{
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NC_dim **dpp = ncap->value;
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const NC_dim **drpp = (const NC_dim **)ref->value;
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NC_dim *const *const end = &dpp[ref->nelems];
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for( /*NADA*/; dpp < end; drpp++, dpp++, ncap->nelems++)
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{
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*dpp = dup_NC_dim(*drpp);
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if(*dpp == NULL)
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{
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status = NC_ENOMEM;
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break;
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}
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}
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}
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if(status != NC_NOERR)
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{
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free_NC_dimarrayV(ncap);
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return status;
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}
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assert(ncap->nelems == ref->nelems);
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return NC_NOERR;
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}
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/*
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* Add a new handle on the end of an array of handles
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* Formerly
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NC_incr_array(array, tail)
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*/
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static int
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incr_NC_dimarray(NC_dimarray *ncap, NC_dim *newelemp)
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{
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NC_dim **vp;
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assert(ncap != NULL);
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if(ncap->nalloc == 0)
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{
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assert(ncap->nelems == 0);
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vp = (NC_dim **) malloc(NC_ARRAY_GROWBY * sizeof(NC_dim *));
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if(vp == NULL)
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return NC_ENOMEM;
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ncap->value = vp;
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ncap->nalloc = NC_ARRAY_GROWBY;
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ncap->hashmap = NC_hashmapnew(0);
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}
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else if(ncap->nelems +1 > ncap->nalloc)
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{
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vp = (NC_dim **) realloc(ncap->value,
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(ncap->nalloc + NC_ARRAY_GROWBY) * sizeof(NC_dim *));
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if(vp == NULL)
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return NC_ENOMEM;
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ncap->value = vp;
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ncap->nalloc += NC_ARRAY_GROWBY;
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}
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if(newelemp != NULL)
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{
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uintptr_t intdata = ncap->nelems;
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NC_hashmapadd(ncap->hashmap, intdata, newelemp->name->cp, strlen(newelemp->name->cp));
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ncap->value[ncap->nelems] = newelemp;
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ncap->nelems++;
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}
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return NC_NOERR;
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}
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NC_dim *
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elem_NC_dimarray(const NC_dimarray *ncap, size_t elem)
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{
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assert(ncap != NULL);
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/* cast needed for braindead systems with signed size_t */
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if(ncap->nelems == 0 || (unsigned long) elem >= ncap->nelems)
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return NULL;
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assert(ncap->value != NULL);
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return ncap->value[elem];
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}
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/* Public */
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int
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NC3_def_dim(int ncid, const char *name, size_t size, int *dimidp)
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{
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int status;
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NC *nc;
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NC3_INFO* ncp;
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int dimid;
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NC_dim *dimp;
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status = NC_check_id(ncid, &nc);
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if(status != NC_NOERR)
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return status;
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ncp = NC3_DATA(nc);
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if(!NC_indef(ncp))
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return NC_ENOTINDEFINE;
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status = NC_check_name(name);
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if(status != NC_NOERR)
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return status;
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if(ncp->flags & NC_64BIT_DATA) {/*CDF-5*/
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if((sizeof(size_t) > 4) && (size > X_UINT64_MAX - 3)) /* "- 3" handles rounded-up size */
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return NC_EDIMSIZE;
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} else if(ncp->flags & NC_64BIT_OFFSET) {/* CDF2 format and LFS */
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if((sizeof(size_t) > 4) && (size > X_UINT_MAX - 3)) /* "- 3" handles rounded-up size */
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return NC_EDIMSIZE;
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} else {/*CDF-1*/
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if(size > X_INT_MAX - 3)
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return NC_EDIMSIZE;
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}
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if(size == NC_UNLIMITED)
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{
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dimid = find_NC_Udim(&ncp->dims, &dimp);
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if(dimid != -1)
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{
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assert(dimid != -1);
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return NC_EUNLIMIT;
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}
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}
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dimid = NC_finddim(&ncp->dims, name, &dimp);
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if(dimid != -1)
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return NC_ENAMEINUSE;
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dimp = new_NC_dim(name, size);
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if(dimp == NULL)
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return NC_ENOMEM;
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status = incr_NC_dimarray(&ncp->dims, dimp);
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if(status != NC_NOERR)
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{
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free_NC_dim(dimp);
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return status;
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}
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if(dimidp != NULL)
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*dimidp = (int)ncp->dims.nelems -1;
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return NC_NOERR;
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}
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int
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NC3_inq_dimid(int ncid, const char *name, int *dimid_ptr)
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{
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int status;
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NC *nc;
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NC3_INFO* ncp;
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int dimid;
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status = NC_check_id(ncid, &nc);
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if(status != NC_NOERR)
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return status;
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ncp = NC3_DATA(nc);
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dimid = NC_finddim(&ncp->dims, name, NULL);
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if(dimid == -1)
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return NC_EBADDIM;
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if (dimid_ptr)
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*dimid_ptr = dimid;
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return NC_NOERR;
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}
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int
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NC3_inq_dim(int ncid, int dimid, char *name, size_t *sizep)
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{
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int status;
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NC *nc;
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NC3_INFO* ncp;
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NC_dim *dimp;
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status = NC_check_id(ncid, &nc);
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if(status != NC_NOERR)
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return status;
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ncp = NC3_DATA(nc);
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dimp = elem_NC_dimarray(&ncp->dims, (size_t)dimid);
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if(dimp == NULL)
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return NC_EBADDIM;
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if(name != NULL)
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{
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(void)strncpy(name, dimp->name->cp,
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dimp->name->nchars);
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name[dimp->name->nchars] = 0;
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}
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if(sizep != NULL)
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{
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if(dimp->size == NC_UNLIMITED)
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*sizep = NC_get_numrecs(ncp);
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else
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*sizep = dimp->size;
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}
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return NC_NOERR;
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}
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int
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NC3_rename_dim( int ncid, int dimid, const char *unewname)
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{
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int status = NC_NOERR;
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NC *nc;
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NC3_INFO* ncp;
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int existid;
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NC_dim *dimp;
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char *newname = NULL; /* normalized */
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NC_string *old = NULL;
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uintptr_t intdata;
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status = NC_check_id(ncid, &nc);
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if(status != NC_NOERR)
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goto done;
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ncp = NC3_DATA(nc);
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if(NC_readonly(ncp))
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{status = NC_EPERM; goto done;}
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status = NC_check_name(unewname);
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if(status != NC_NOERR)
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goto done;
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existid = NC_finddim(&ncp->dims, unewname, &dimp);
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if(existid != -1)
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{status = NC_ENAMEINUSE; goto done;}
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dimp = elem_NC_dimarray(&ncp->dims, (size_t)dimid);
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if(dimp == NULL)
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{status = NC_EBADDIM; goto done;}
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old = dimp->name;
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status = nc_utf8_normalize((const unsigned char *)unewname,(unsigned char **)&newname);
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if(status != NC_NOERR)
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goto done;
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if(NC_indef(ncp))
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{
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NC_string *newStr = new_NC_string(strlen(newname), newname);
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if(newStr == NULL)
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{status = NC_ENOMEM; goto done;}
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/* Remove old name from hashmap; add new... */
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NC_hashmapremove(ncp->dims.hashmap, old->cp, strlen(old->cp), NULL);
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dimp->name = newStr;
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intdata = dimid;
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NC_hashmapadd(ncp->dims.hashmap, intdata, newStr->cp, strlen(newStr->cp));
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free_NC_string(old);
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goto done;
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}
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/* else, not in define mode */
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/* If new name is longer than old, then complain,
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but otherwise, no change (test is same as set_NC_string)*/
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if(dimp->name->nchars < strlen(newname)) {
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{status = NC_ENOTINDEFINE; goto done;}
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}
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/* Remove old name from hashmap; add new... */
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/* WARNING: strlen(NC_string.cp) may be less than NC_string.nchars */
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NC_hashmapremove(ncp->dims.hashmap, old->cp, strlen(old->cp), NULL);
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/* WARNING: strlen(NC_string.cp) may be less than NC_string.nchars */
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status = set_NC_string(dimp->name, newname);
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if(status != NC_NOERR)
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goto done;
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intdata = (uintptr_t)dimid;
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NC_hashmapadd(ncp->dims.hashmap, intdata, dimp->name->cp, strlen(dimp->name->cp));
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set_NC_hdirty(ncp);
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if(NC_doHsync(ncp))
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{
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status = NC_sync(ncp);
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if(status != NC_NOERR)
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goto done;
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}
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done:
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if(newname) free(newname);
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return status;
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}
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