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f0f0f39950
# Description Remove various obsolete build options. Also do some code movement. ## Specific Changes * The remotetest server is sometimes unstable, so provide a mechanism to force disabling calls to remotetest.unidata.ucar.edu. This is enabled by adding a repository variable named REMOTETESTDOWN with the value "yes". * Fix CMakeLists.txt to use the uname command as an alternate to using the hostname command (which does not work under cygwin). * Remove the JNA stuff as obsolete * Remove the ENABLE_CLIENTSIDE_FILTERS options since it has been disabled for a while. * Fix bad option flag in some github action .yml files: change --disable-xml2 to --disable-libxml2 * Collect globalstate definitions into nc4internal.h * Remove ENABLE_NCZARR_FILTERS_TESTING option as obsolete and replace with ENABLE_NCZARR_FILTERS * Move some dispatcher independent functions from libsrc4/nc4internal.c to libdispatch/ddispatch.c * As a long term goal, and because it is now the case that --enable-nczarr => USE_NETCDF4, make the external options --enable-netcdf-4 and --enable-netcdf4 obsolete in favor of --enable-hdf5 We will do the following for one more release cycle. 1. Make --enable-netcdf-4 be an alias for --enable-netcdf4. 2. Make --enable-netcdf4 an alias for --enable-hdf5. 3. Internally, convert most uses of USE_NETCDF_4 ad USE_NETCDF4 to USE_HDF5 After the next release, --enable-netcdf-4 and --enable-netcdf4 will be removed.
476 lines
13 KiB
C
476 lines
13 KiB
C
/*
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Copyright (c) 1998-2018 University Corporation for Atmospheric Research/Unidata
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See LICENSE.txt for license information.
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*/
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#include "config.h"
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#include "ncdispatch.h"
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#include "ncuri.h"
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#include "nclog.h"
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#include "ncbytes.h"
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#include "ncrc.h"
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#include "ncoffsets.h"
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#include "ncpathmgr.h"
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#include "ncxml.h"
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#include "nc4internal.h"
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/* Required for getcwd, other functions. */
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#ifdef HAVE_UNISTD_H
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#include <unistd.h>
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#endif
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/* Required for getcwd, other functions. */
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#ifdef _WIN32
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#include <direct.h>
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#endif
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#if defined(NETCDF_ENABLE_BYTERANGE) || defined(NETCDF_ENABLE_DAP) || defined(NETCDF_ENABLE_DAP4)
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#include <curl/curl.h>
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#endif
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#ifdef NETCDF_ENABLE_S3
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#include "ncs3sdk.h"
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#endif
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#define MAXPATH 1024
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/* Define vectors of zeros and ones for use with various nc_get_varX functions */
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/* Note, this form of initialization fails under Cygwin */
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size_t NC_coord_zero[NC_MAX_VAR_DIMS] = {0};
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size_t NC_coord_one[NC_MAX_VAR_DIMS] = {1};
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ptrdiff_t NC_stride_one[NC_MAX_VAR_DIMS] = {1};
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/*
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static nc_type longtype = (sizeof(long) == sizeof(int)?NC_INT:NC_INT64);
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static nc_type ulongtype = (sizeof(unsigned long) == sizeof(unsigned int)?NC_UINT:NC_UINT64);
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*/
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/* Allow dispatch to do general initialization and finalization */
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int
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NCDISPATCH_initialize(void)
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{
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int status = NC_NOERR;
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int i;
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NCglobalstate* globalstate = NULL;
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for(i=0;i<NC_MAX_VAR_DIMS;i++) {
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NC_coord_zero[i] = 0;
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NC_coord_one[i] = 1;
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NC_stride_one[i] = 1;
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}
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globalstate = NC_getglobalstate(); /* will allocate and clear */
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/* Capture temp dir*/
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{
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char* tempdir = NULL;
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#if defined _WIN32 || defined __MSYS__ || defined __CYGWIN__
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tempdir = getenv("TEMP");
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#else
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tempdir = "/tmp";
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#endif
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if(tempdir == NULL) {
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fprintf(stderr,"Cannot find a temp dir; using ./\n");
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tempdir = ".";
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}
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globalstate->tempdir= strdup(tempdir);
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}
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/* Capture $HOME */
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{
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#if defined(_WIN32) && !defined(__MINGW32__)
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char* home = getenv("USERPROFILE");
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#else
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char* home = getenv("HOME");
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#endif
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if(home == NULL) {
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/* use cwd */
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home = malloc(MAXPATH+1);
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NCgetcwd(home,MAXPATH);
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} else
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home = strdup(home); /* make it always free'able */
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assert(home != NULL);
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NCpathcanonical(home,&globalstate->home);
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nullfree(home);
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}
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/* Capture $CWD */
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{
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char cwdbuf[4096];
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cwdbuf[0] = '\0';
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(void)NCgetcwd(cwdbuf,sizeof(cwdbuf));
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if(strlen(cwdbuf) == 0) {
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/* use tempdir */
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strcpy(cwdbuf, globalstate->tempdir);
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}
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globalstate->cwd = strdup(cwdbuf);
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}
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ncloginit();
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/* Now load RC Files */
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ncrc_initialize();
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/* Compute type alignments */
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NC_compute_alignments();
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#if defined(NETCDF_ENABLE_BYTERANGE) || defined(NETCDF_ENABLE_DAP) || defined(NETCDF_ENABLE_DAP4)
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/* Initialize curl if it is being used */
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{
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CURLcode cstat = curl_global_init(CURL_GLOBAL_ALL);
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if(cstat != CURLE_OK)
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status = NC_ECURL;
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}
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#endif
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return status;
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}
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int
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NCDISPATCH_finalize(void)
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{
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int status = NC_NOERR;
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#if defined(NETCDF_ENABLE_BYTERANGE) || defined(NETCDF_ENABLE_DAP) || defined(NETCDF_ENABLE_DAP4)
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curl_global_cleanup();
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#endif
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#if defined(NETCDF_ENABLE_DAP4)
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ncxml_finalize();
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#endif
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NC_freeglobalstate(); /* should be one of the last things done */
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return status;
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}
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/**************************************************/
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/* Global State constants and state */
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/* The singleton global state object */
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static NCglobalstate* nc_globalstate = NULL;
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/* Forward */
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static int NC_createglobalstate(void);
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/** \defgroup global_state Global state functions. */
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/** \{
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\ingroup global state
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*/
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/* NCglobal state management */
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static int
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NC_createglobalstate(void)
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{
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int stat = NC_NOERR;
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const char* tmp = NULL;
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if(nc_globalstate == NULL) {
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nc_globalstate = calloc(1,sizeof(NCglobalstate));
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}
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/* Initialize struct pointers */
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if((nc_globalstate->rcinfo = calloc(1,sizeof(struct NCRCinfo)))==NULL)
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{stat = NC_ENOMEM; goto done;}
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if((nc_globalstate->rcinfo->entries = nclistnew())==NULL)
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{stat = NC_ENOMEM; goto done;}
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if((nc_globalstate->rcinfo->s3profiles = nclistnew())==NULL)
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{stat = NC_ENOMEM; goto done;}
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/* Get environment variables */
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if(getenv(NCRCENVIGNORE) != NULL)
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nc_globalstate->rcinfo->ignore = 1;
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tmp = getenv(NCRCENVRC);
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if(tmp != NULL && strlen(tmp) > 0)
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nc_globalstate->rcinfo->rcfile = strdup(tmp);
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/* Initialize chunk cache defaults */
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nc_globalstate->chunkcache.size = DEFAULT_CHUNK_CACHE_SIZE; /**< Default chunk cache size. */
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nc_globalstate->chunkcache.nelems = DEFAULT_CHUNKS_IN_CACHE; /**< Default chunk cache number of elements. */
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nc_globalstate->chunkcache.preemption = DEFAULT_CHUNK_CACHE_PREEMPTION; /**< Default chunk cache preemption. */
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done:
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return stat;
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}
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/* Get global state */
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NCglobalstate*
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NC_getglobalstate(void)
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{
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if(nc_globalstate == NULL)
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NC_createglobalstate();
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return nc_globalstate;
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}
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void
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NC_freeglobalstate(void)
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{
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if(nc_globalstate != NULL) {
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nullfree(nc_globalstate->tempdir);
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nullfree(nc_globalstate->home);
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nullfree(nc_globalstate->cwd);
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nullfree(nc_globalstate->aws.default_region);
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nullfree(nc_globalstate->aws.config_file);
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nullfree(nc_globalstate->aws.profile);
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nullfree(nc_globalstate->aws.access_key_id);
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nullfree(nc_globalstate->aws.secret_access_key);
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if(nc_globalstate->rcinfo) {
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NC_rcclear(nc_globalstate->rcinfo);
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free(nc_globalstate->rcinfo);
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}
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free(nc_globalstate);
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nc_globalstate = NULL;
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}
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}
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/** \} */
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/**************************************************/
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/** \defgroup atomic_types Atomic Type functions */
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/** \{
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\ingroup atomic_types
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*/
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/* The sizes of types may vary from platform to platform, but within
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* netCDF files, type sizes are fixed. */
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#define NC_CHAR_LEN sizeof(char) /**< @internal Size of char. */
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#define NC_STRING_LEN sizeof(char *) /**< @internal Size of char *. */
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#define NC_BYTE_LEN 1 /**< @internal Size of byte. */
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#define NC_SHORT_LEN 2 /**< @internal Size of short. */
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#define NC_INT_LEN 4 /**< @internal Size of int. */
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#define NC_FLOAT_LEN 4 /**< @internal Size of float. */
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#define NC_DOUBLE_LEN 8 /**< @internal Size of double. */
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#define NC_INT64_LEN 8 /**< @internal Size of int64. */
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/** @internal Names of atomic types. */
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const char* nc4_atomic_name[NUM_ATOMIC_TYPES] = {"none", "byte", "char",
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"short", "int", "float",
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"double", "ubyte",
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"ushort", "uint",
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"int64", "uint64", "string"};
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static const size_t nc4_atomic_size[NUM_ATOMIC_TYPES] = {0, NC_BYTE_LEN, NC_CHAR_LEN, NC_SHORT_LEN,
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NC_INT_LEN, NC_FLOAT_LEN, NC_DOUBLE_LEN,
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NC_BYTE_LEN, NC_SHORT_LEN, NC_INT_LEN, NC_INT64_LEN,
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NC_INT64_LEN, NC_STRING_LEN};
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/**
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* @internal Get the name and size of an atomic type. For strings, 1 is
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* returned.
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*
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* @param typeid1 Type ID.
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* @param name Gets the name of the type.
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* @param size Gets the size of one element of the type in bytes.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_EBADID Bad ncid.
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* @return ::NC_EBADTYPE Type not found.
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* @author Dennis Heimbigner
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*/
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int
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NC4_inq_atomic_type(nc_type typeid1, char *name, size_t *size)
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{
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if (typeid1 >= NUM_ATOMIC_TYPES)
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return NC_EBADTYPE;
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if (name)
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strcpy(name, nc4_atomic_name[typeid1]);
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if (size)
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*size = nc4_atomic_size[typeid1];
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return NC_NOERR;
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}
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/**
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* @internal Get the id and size of an atomic type by name.
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*
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* @param name [in] the name of the type.
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* @param idp [out] the type index of the type.
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* @param sizep [out] the size of one element of the type in bytes.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_EBADID Bad ncid.
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* @return ::NC_EBADTYPE Type not found.
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* @author Dennis Heimbigner
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*/
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int
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NC4_lookup_atomic_type(const char *name, nc_type* idp, size_t *sizep)
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{
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int i;
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if (name == NULL || strlen(name) == 0)
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return NC_EBADTYPE;
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for(i=0;i<NUM_ATOMIC_TYPES;i++) {
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if(strcasecmp(name,nc4_atomic_name[i])==0) {
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if(idp) *idp = i;
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if(sizep) *sizep = nc4_atomic_size[i];
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return NC_NOERR;
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}
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}
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return NC_EBADTYPE;
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}
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/**
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* @internal Get the id of an atomic type from the name.
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*
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* @param ncid File and group ID.
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* @param name Name of type
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* @param typeidp Pointer that will get the type ID.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_EBADTYPE Type not found.
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* @author Ed Hartnett
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*/
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int
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NC4_inq_atomic_typeid(int ncid, const char *name, nc_type *typeidp)
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{
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int i;
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NC_UNUSED(ncid);
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/* Handle atomic types. */
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for (i = 0; i < NUM_ATOMIC_TYPES; i++) {
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if (!strcmp(name, nc4_atomic_name[i]))
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{
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if (typeidp)
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*typeidp = i;
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return NC_NOERR;
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}
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}
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return NC_EBADTYPE;
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}
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/**
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* @internal Get the class of a type
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*
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* @param xtype NetCDF type ID.
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* @param type_class Pointer that gets class of type, NC_INT,
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* NC_FLOAT, NC_CHAR, or NC_STRING, NC_ENUM, NC_VLEN, NC_COMPOUND, or
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* NC_OPAQUE.
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*
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* @return ::NC_NOERR No error.
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* @author Ed Hartnett, Dennis Heimbigner
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*/
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int
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NC4_get_atomic_typeclass(nc_type xtype, int *type_class)
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{
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assert(type_class);
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switch (xtype) {
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case NC_BYTE:
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case NC_UBYTE:
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case NC_SHORT:
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case NC_USHORT:
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case NC_INT:
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case NC_UINT:
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case NC_INT64:
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case NC_UINT64:
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/* NC_INT is class used for all integral types */
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*type_class = NC_INT;
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break;
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case NC_FLOAT:
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case NC_DOUBLE:
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/* NC_FLOAT is class used for all floating-point types */
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*type_class = NC_FLOAT;
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break;
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case NC_CHAR:
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*type_class = NC_CHAR;
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break;
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case NC_STRING:
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*type_class = NC_STRING;
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break;
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default:
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return NC_EBADTYPE;
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}
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return NC_NOERR;
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}
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/** \} */
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/**************************************************/
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/** \defgroup alignment Alignment functions. */
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/** \{
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\ingroup alignment
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*/
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/**
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Provide a function to store global data alignment
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information.
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Repeated calls to nc_set_alignment will overwrite any existing values.
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If defined, then for every file created or opened after the call to
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nc_set_alignment, and for every new variable added to the file, the
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most recently set threshold and alignment values will be applied
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to that variable.
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The nc_set_alignment function causes new data written to a
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netCDF-4 file to be aligned on disk to a specified block
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size. To be effective, alignment should be the system disk block
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size, or a multiple of it. This setting is effective with MPI
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I/O and other parallel systems.
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This is a trade-off of write speed versus file size. Alignment
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leaves holes between file objects. The default of no alignment
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writes file objects contiguously, without holes. Alignment has
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no impact on file readability.
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Alignment settings apply only indirectly, through the file open
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functions. Call nc_set_alignment first, then nc_create or
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nc_open for one or more files. Current alignment settings are
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locked in when each file is opened, then forgotten when the same
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file is closed. For illustration, it is possible to write
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different files at the same time with different alignments, by
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interleaving nc_set_alignment and nc_open calls.
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Alignment applies to all newly written low-level file objects at
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or above the threshold size, including chunks of variables,
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attributes, and internal infrastructure. Alignment is not locked
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in to a data variable. It can change between data chunks of the
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same variable, based on a file's history.
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Refer to H5Pset_alignment in HDF5 documentation for more
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specific details, interactions, and additional rules.
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@param threshold The minimum size to which alignment is applied.
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@param alignment The alignment value.
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@return ::NC_NOERR No error.
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@return ::NC_EINVAL Invalid input.
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@author Dennis Heimbigner
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@ingroup datasets
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*/
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int
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nc_set_alignment(int threshold, int alignment)
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{
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NCglobalstate* gs = NC_getglobalstate();
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gs->alignment.threshold = threshold;
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gs->alignment.alignment = alignment;
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gs->alignment.defined = 1;
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return NC_NOERR;
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}
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/**
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Provide get function to retrieve global data alignment
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information.
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The nc_get_alignment function return the last values set by
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nc_set_alignment. If nc_set_alignment has not been called, then
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it returns the value 0 for both threshold and alignment.
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@param thresholdp Return the current minimum size to which alignment is applied or zero.
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@param alignmentp Return the current alignment value or zero.
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@return ::NC_NOERR No error.
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@return ::NC_EINVAL Invalid input.
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@author Dennis Heimbigner
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@ingroup datasets
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*/
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int
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nc_get_alignment(int* thresholdp, int* alignmentp)
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{
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NCglobalstate* gs = NC_getglobalstate();
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if(thresholdp) *thresholdp = gs->alignment.threshold;
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if(alignmentp) *alignmentp = gs->alignment.alignment;
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return NC_NOERR;
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}
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/** \} */
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