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netcdf-c/nc_test4/tst_rename.c
Ward Fisher 36c4b7947d Merge branch 'master' into newhash1.dmh
2018-03-20 11:20:14 -06:00

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/*
* Test renames of vars and dims. It's a surprisingly tricky business.
*
* Quincey Koziol, Ed Hartnett
*/
#include "nc_tests.h"
#include "err_macros.h"
#define FILE_NAME3 "tst_rename_fix3.nc"
#define FILE_NAME4 "tst_rename_fix4.nc"
#define ODIM_NAME "lat" /* name for coord dim */
#define LAT "lat"
#define TAL "tal"
#define TAL1 "tal1"
#define TAL2 "tal2"
#define RH "rh"
#define NDIM_NAME "tal" /* new name for coord dim */
#define OVAR_NAME "lat" /* name for coord var */
#define NVAR_NAME "tal" /* new name for coord var */
#define OVAR2_NAME "rh" /* name for non-coord var that uses coord dim */
#define VAR_RANK 1 /* all vars in this test are of same rank */
#define DIM_LEN 2 /* all dims in this test are of same len */
/* For the tests based on Charlie Zender's rename bug test. */
#define CHARLIE_TEST_FILE "tst_charlie_rename_coord_dim.nc"
#define LON "lon"
#define LONGITUDE "longitude"
#define DIM1_LEN 4
#define NDIM1 1
/* Test data. */
int lats[DIM_LEN] = {-90, 90};
float rh[DIM_LEN] = {0.25, 0.75};
/* For renaming tests. Create small test file of specified format
* with a coordinate dimension, corresponding coordinate variable, and
* a non-coordinate variable that uses the coordinate dimension. */
int
create_test_file(char *path, int format)
{
int ncid, varid, var2id;
int dims[VAR_RANK];
if (nc_set_default_format(format, NULL)) ERR;
if (nc_create(path, 0, &ncid)) ERR;
if (nc_def_dim(ncid, LAT, DIM_LEN, &dims[0])) ERR;
if (nc_def_var(ncid, LAT, NC_INT, VAR_RANK, dims, &varid)) ERR;
if (nc_def_var(ncid, RH, NC_FLOAT, VAR_RANK, dims, &var2id)) ERR;
if (nc_enddef(ncid)) ERR; /* not necessary for netCDF-4 files */
if (nc_put_var_int(ncid, varid, lats)) ERR;
if (nc_put_var_float(ncid, var2id, rh)) ERR;
if (nc_close(ncid)) ERR;
return 0;
}
/* Check the file that was produced by create_test_file(). Only the
* names have been changed... */
int
check_file(int ncid, char *var0_name, char *var1_name, char *dim_name)
{
int varid;
int var2id;
int dimid;
int lats_in[DIM_LEN];
float rh_in[DIM_LEN];
int ii;
/* printf("checking for vars %s and %s, dim %s\n", var0_name, var1_name, */
/* dim_name); */
/* Check vars. Ids will change because of rename. */
if (nc_inq_varid(ncid, var0_name, &varid)) ERR;
if (nc_inq_varid(ncid, var1_name, &var2id)) ERR;
/* Check dim. */
if (nc_inq_dimid(ncid, dim_name, &dimid)) ERR;
if (dimid != 0) ERR;
/* Check the lats. */
if (nc_get_var_int(ncid, varid, lats_in)) ERR;
for (ii = 0; ii < DIM_LEN; ii++)
if (lats_in[ii] != lats[ii])
ERR;
/* Check the RH. */
if (nc_get_var_float(ncid, var2id, rh_in)) ERR;
for (ii = 0; ii < DIM_LEN; ii++)
if (rh_in[ii] != rh[ii])
ERR;
return 0;
}
/* Check the file created in Charlie Zender's test. See github
* #597. */
int
check_charlies_file(char *file, char *dim_name, char *var_name)
{
int ncid;
int varid, dimid;
if (nc_open(file, 0, &ncid)) ERR;
if (nc_inq_varid(ncid, var_name, &varid)) ERR;
if (nc_inq_dimid(ncid, dim_name, &dimid)) ERR;
if (varid || dimid) ERR;
if (nc_close(ncid)) ERR;
return NC_NOERR;
}
/* Check a data-free version of the already-open file created in a
* test. */
int
check_charlies_no_enddef_file(int ncid, char *dim_name, char *var_name)
{
int varid, dimid;
if (nc_inq_varid(ncid, var_name, &varid)) ERR;
if (nc_inq_dimid(ncid, dim_name, &dimid)) ERR;
if (varid || dimid) ERR;
return NC_NOERR;
}
int
main(int argc, char **argv)
{
#define NUM_FORMATS 2
int formats[NUM_FORMATS] = {NC_FORMAT_NETCDF4, NC_FORMAT_NETCDF4_CLASSIC};
char *fmt_names[] = {"netCDF-4", "netCDF-4 classic model"};
char *file_names[] = {FILE_NAME3, FILE_NAME4};
int format;
fprintf(stderr,"*** Testing netcdf rename bugs and fixes.\n");
/* nc_set_log_level(5); */
for (format = 0; format < NUM_FORMATS; format++)
{
int ncid, dimid, varid, var2id;
int lats[DIM_LEN] = {-90, 90};
int lats_in[DIM_LEN];
float rh[DIM_LEN] = {0.25, 0.75};
float rh_in[DIM_LEN];
int ii;
fprintf(stderr,"*** Test Charlie's test for renaming without enddef...");
{
int ncid, dimid, varid;
/* Create a nice, simple file. This file will contain one
* dataset, "lon", which is a dimscale. */
if (nc_create(CHARLIE_TEST_FILE, NC_NETCDF4, &ncid)) ERR;
if (nc_def_dim(ncid, LON, DIM1_LEN, &dimid)) ERR;
if (nc_def_var(ncid, LON, NC_FLOAT, NDIM1, &dimid, &varid)) ERR;
/* Check the file. */
if (check_charlies_no_enddef_file(ncid, LON, LON)) ERR;
/* Rename the dimension. This will cause lon to stop being a
* coord var and dimscale, and prepare to create a new
* dimscale without var dataset "longitude". Dataset "lon"
* will point to "longitude" as its dimscale. */
if (nc_rename_dim(ncid, 0, LONGITUDE)) ERR;
if (check_charlies_no_enddef_file(ncid, LONGITUDE, LON)) ERR;
/* Rename the variable. This will remove the (as yet
* unwritten) dimscale-only dataset "longitude" and rename
* the extisting dataset "lon" to "longitude". Variable
* "longitude" will become a coordinate var. */
if (nc_rename_var(ncid, 0, LONGITUDE)) ERR;
if (check_charlies_no_enddef_file(ncid, LONGITUDE, LONGITUDE)) ERR;
if (nc_close(ncid)) ERR;
/* Reopen the file and check. */
if (check_charlies_file(CHARLIE_TEST_FILE, LONGITUDE, LONGITUDE)) ERR;
}
SUMMARIZE_ERR;
fprintf(stderr,"*** Test Charlie's test for renaming with one enddef...");
{
int ncid, dimid, varid;
#ifdef DEBUG
nc_set_log_level(5);
#endif
/* Create a nice, simple file. This file will contain one
* dataset, "lon", which is a dimscale. */
if (nc_create(CHARLIE_TEST_FILE, NC_NETCDF4, &ncid)) ERR;
if (nc_def_dim(ncid, LON, DIM1_LEN, &dimid)) ERR;
if (nc_def_var(ncid, LON, NC_FLOAT, NDIM1, &dimid, &varid)) ERR;
/* Check the file. */
if (check_charlies_no_enddef_file(ncid, LON, LON)) ERR;
/* Rename the dimension. This will cause lon to stop being a
* coord var and dimscale, and prepare to create a new
* dimscale without var dataset "longitude". Dataset "lon"
* will point to "longitude" as its dimscale. */
if (nc_rename_dim(ncid, 0, LONGITUDE)) ERR;
if (check_charlies_no_enddef_file(ncid, LONGITUDE, LON)) ERR;
/* Trigger write to disk. */
if (nc_enddef(ncid)) ERR;
if (nc_redef(ncid)) ERR;
if (check_charlies_no_enddef_file(ncid, LONGITUDE, LON)) ERR;
/* Rename the variable. This will remove the (as yet
* unwritten) dimscale-only dataset "longitude" and rename
* the extisting dataset "lon" to "longitude". Variable
* "longitude" will become a coordinate var. */
if (nc_rename_var(ncid, 0, LONGITUDE)) ERR;
if (check_charlies_no_enddef_file(ncid, LONGITUDE, LONGITUDE)) ERR;
if (nc_close(ncid)) ERR;
/* Reopen the file and check. */
if (check_charlies_file(CHARLIE_TEST_FILE, LONGITUDE, LONGITUDE)) ERR;
}
SUMMARIZE_ERR;
fprintf(stderr,"*** Test Charlie's test for renaming with enddef...");
{
int ncid, dimid, varid;
float data[DIM1_LEN] = {0, 90.0, 180.0, 270.0};
/* Create a nice, simple file. This file will contain one
* dataset, "lon", which is a dimscale. */
if (nc_create(CHARLIE_TEST_FILE, NC_NETCDF4, &ncid)) ERR;
if (nc_def_dim(ncid, LON, DIM1_LEN, &dimid)) ERR;
if (nc_def_var(ncid, LON, NC_FLOAT, NDIM1, &dimid, &varid)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_put_var_float(ncid, varid, data)) ERR;
if (nc_close(ncid)) ERR;
/* Check the file. */
if (check_charlies_file(CHARLIE_TEST_FILE, LON, LON)) ERR;
/* Open the file and rename the dimension. This will cause
* lon to stop being a coord var and dimscale, and create a
* new dimscale without var dataset "longitude". Dataset
* "lon" will point to "longitude" as its dimscale. */
if (nc_open(CHARLIE_TEST_FILE, NC_WRITE, &ncid)) ERR;
if (nc_redef(ncid)) ERR;
if (nc_rename_dim(ncid, 0, LONGITUDE)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_close(ncid)) ERR;
/* Reopen the file to check. */
if (check_charlies_file(CHARLIE_TEST_FILE, LONGITUDE, LON)) ERR;
/* Open the file and rename the variable. This will remove
* the dimscale-only dataset "longitude" and rename the
* extisting dataset "lon" to "longitude". Variable
* "longitude" will become a coordinate var. */
if (nc_open(CHARLIE_TEST_FILE, NC_WRITE, &ncid)) ERR;
if (nc_redef(ncid)) ERR;
if (nc_rename_var(ncid, 0, LONGITUDE)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_close(ncid)) ERR;
/* Reopen the file to check. */
if (check_charlies_file(CHARLIE_TEST_FILE, LONGITUDE, LONGITUDE)) ERR;
}
SUMMARIZE_ERR;
printf("*** testing renaming before enddef for %s...", fmt_names[format]);
{
int ncid, varid, var2id;
int dimid;
if (nc_set_default_format(formats[format], NULL)) ERR;
if (nc_create(file_names[format], 0, &ncid)) ERR;
if (nc_def_dim(ncid, LAT, DIM_LEN, &dimid)) ERR;
if (nc_def_var(ncid, LAT, NC_INT, VAR_RANK, &dimid, &varid)) ERR;
if (nc_def_var(ncid, RH, NC_FLOAT, VAR_RANK, &dimid, &var2id)) ERR;
/* Now rename the dim. */
if (nc_rename_dim(ncid, dimid, TAL)) ERR;
if (nc_rename_var(ncid, varid, TAL)) ERR;
if (nc_enddef(ncid)) ERR; /* not necessary for netCDF-4 files */
if (nc_put_var_int(ncid, varid, lats)) ERR;
if (nc_put_var_float(ncid, var2id, rh)) ERR;
if (nc_close(ncid)) ERR;
/* Reopen and check. */
if (nc_open(file_names[format], NC_WRITE, &ncid)) ERR;
if (check_file(ncid, TAL, RH, TAL)) ERR;
if (nc_close(ncid)) ERR;
}
SUMMARIZE_ERR;
printf("*** testing renaming after enddef for %s...", fmt_names[format]);
{
int ncid, varid, var2id;
int dimid;
if (nc_set_default_format(formats[format], NULL)) ERR;
if (nc_create(file_names[format], 0, &ncid)) ERR;
if (nc_def_dim(ncid, LAT, DIM_LEN, &dimid)) ERR;
if (nc_def_var(ncid, TAL1, NC_INT, VAR_RANK, &dimid, &varid)) ERR;
if (nc_def_var(ncid, RH, NC_FLOAT, VAR_RANK, &dimid, &var2id)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_redef(ncid)) ERR;
if (nc_rename_var(ncid, varid, TAL2)) ERR;
if (nc_rename_dim(ncid, dimid, TAL)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_put_var_int(ncid, varid, lats)) ERR;
if (nc_put_var_float(ncid, var2id, rh)) ERR;
if (nc_close(ncid)) ERR;
/* Reopen and check. */
if (nc_open(file_names[format], NC_WRITE, &ncid)) ERR;
if (check_file(ncid, TAL2, RH, TAL)) ERR;
if (nc_close(ncid)) ERR;
}
SUMMARIZE_ERR;
printf("*** testing more renaming after enddef for %s...", fmt_names[format]);
{
int ncid, varid, var2id;
int dimid;
/* This will create a HDF5 file with two datasets, RH, and
* LAT. LAT is a dimscale. RH points to dimscale LAT. Life is
* so simple. */
if (nc_set_default_format(formats[format], NULL)) ERR;
if (nc_create(file_names[format], 0, &ncid)) ERR;
if (nc_def_dim(ncid, LAT, DIM_LEN, &dimid)) ERR;
if (nc_def_var(ncid, LAT, NC_INT, VAR_RANK, &dimid, &varid)) ERR;
if (nc_def_var(ncid, RH, NC_FLOAT, VAR_RANK, &dimid, &var2id)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_redef(ncid)) ERR;
/* This will cause dataset LAT to be renamed TAL. It will no
* longer be a dimscale. Dataset LAT will be created as a
* dimscale without a variable. Datasets RH and TAL will
* re-point to (new) dimscale LAT. */
if (nc_rename_var(ncid, varid, TAL)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_redef(ncid)) ERR;
/* This will cause dimscale-only dataset LAT to be
* deleted. Existing dataset TAL will become the dimscale
* dataset. Dataset RH will re-point to dimscale TAL. */
if (nc_rename_dim(ncid, dimid, TAL)) ERR;
if (nc_enddef(ncid)) ERR;
/* Varids have changed, so get them again. */
if (nc_inq_varid(ncid, TAL, &varid)) ERR;
if (nc_inq_varid(ncid, RH, &var2id)) ERR;
/* Write some data. */
if (nc_put_var_int(ncid, varid, lats)) ERR;
if (nc_put_var_float(ncid, var2id, rh)) ERR;
if (nc_close(ncid)) ERR;
/* Reopen and check. */
if (nc_open(file_names[format], NC_WRITE, &ncid)) ERR;
if (check_file(ncid, TAL, RH, TAL)) ERR;
if (nc_close(ncid)) ERR;
}
SUMMARIZE_ERR;
printf("*** testing renaming after enddef for %s...", fmt_names[format]);
{
int ncid, varid, var2id;
int dimid;
if (nc_set_default_format(formats[format], NULL)) ERR;
if (nc_create(file_names[format], 0, &ncid)) ERR;
if (nc_def_dim(ncid, LAT, DIM_LEN, &dimid)) ERR;
if (nc_def_var(ncid, LAT, NC_INT, VAR_RANK, &dimid, &varid)) ERR;
if (nc_def_var(ncid, RH, NC_FLOAT, VAR_RANK, &dimid, &var2id)) ERR;
if (nc_enddef(ncid)) ERR; /* not necessary for netCDF-4 files */
if (nc_redef(ncid)) ERR; /* not necessary for netCDF-4 files */
/* Now rename the dim. */
if (nc_rename_dim(ncid, dimid, TAL)) ERR;
if (nc_rename_var(ncid, varid, TAL)) ERR;
if (nc_enddef(ncid)) ERR; /* not necessary for netCDF-4 files */
if (nc_put_var_int(ncid, varid, lats)) ERR;
if (nc_put_var_float(ncid, var2id, rh)) ERR;
if (nc_close(ncid)) ERR;
/* Reopen and check. */
if (nc_open(file_names[format], NC_WRITE, &ncid)) ERR;
if (check_file(ncid, TAL, RH, TAL)) ERR;
if (nc_close(ncid)) ERR;
}
SUMMARIZE_ERR;
printf("*** testing renaming after enddef for %s...", fmt_names[format]);
{
/* Create a file with datasets LAT, RH. LAT is a dimscale. RH
* points to LAT. */
if (create_test_file(file_names[format], formats[format])) ERR;
if (nc_open(file_names[format], NC_WRITE, &ncid)) ERR;
if (nc_inq_dimid(ncid, LAT, &dimid)) ERR;
if (nc_inq_varid(ncid, LAT, &varid)) ERR;
if (nc_inq_varid(ncid, RH, &var2id)) ERR;
if (check_file(ncid, LAT, RH, LAT)) ERR;
if (nc_redef(ncid)) ERR;
/* Rename the dim. This creates new dataset TAL. LAT is no
* longer a dimscale. RH is repointed to TAL. LAT is pointed
* to TAL. */
if (nc_rename_dim(ncid, dimid, TAL)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_redef(ncid)) ERR;
/* Rename the var. This will remove dimscale-only dataset
* TAL. LAT will become a dimscale. RH will point to LAT. */
if (nc_rename_var(ncid, varid, TAL)) ERR;
if (nc_enddef(ncid)) ERR;
/* This should work but does not. It is a known rename
* bug. Rename is coming! */
/* if (check_file(ncid, LAT, RH, TAL)) ERR; */
if (nc_close(ncid)) ERR;
if (nc_open(file_names[format], NC_WRITE, &ncid)) ERR;
/* Should work but does not. Raname issues. */
/* if (check_file(ncid, LAT, RH, TAL)) ERR; */
if (nc_close(ncid)) ERR;
}
SUMMARIZE_ERR;
fprintf(stderr,"*** Test renaming just coordinate variable for %s...",
fmt_names[format]);
{
if (create_test_file(file_names[format], formats[format])) ERR;
if (nc_open(file_names[format], NC_WRITE, &ncid)) ERR;
if (nc_inq_dimid(ncid, ODIM_NAME, &dimid)) ERR;
if (nc_inq_varid(ncid, OVAR_NAME, &varid)) ERR;
if (nc_inq_varid(ncid, OVAR2_NAME, &var2id)) ERR;
if (nc_redef(ncid)) ERR;
if (nc_rename_var(ncid, varid, NVAR_NAME)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_get_var_int(ncid, varid, lats_in)) ERR;
for (ii = 0; ii < DIM_LEN; ii++) {
if (lats_in[ii] != lats[ii])
fprintf(stderr, "\tlats_in[%d] is %d, should be %d\n", ii, lats_in[ii], lats[ii]);
}
if (nc_get_var_float(ncid, var2id, rh_in)) ERR;
for (ii = 0; ii < DIM_LEN; ii++) {
if (rh_in[ii] != rh[ii])
fprintf(stderr, "\trh_in[%d] is %g, should be %g\n", ii, rh_in[ii], rh[ii]);
}
if (nc_close(ncid)) ERR;
}
SUMMARIZE_ERR;
fprintf(stderr,"*** Test renaming just coordinate dimension for %s...",
fmt_names[format]);
{
if (create_test_file(file_names[format], formats[format])) ERR;
if (nc_open(file_names[format], NC_WRITE, &ncid)) ERR;
if (nc_inq_dimid(ncid, ODIM_NAME, &dimid)) ERR;
if (nc_inq_varid(ncid, OVAR_NAME, &varid)) ERR;
if (nc_inq_varid(ncid, OVAR2_NAME, &var2id)) ERR;
if (nc_redef(ncid)) ERR;
if (nc_rename_dim(ncid, dimid, NDIM_NAME)) ERR;
if (nc_enddef(ncid)) ERR;
if (nc_get_var_int(ncid, varid, lats_in)) ERR;
for (ii = 0; ii < DIM_LEN; ii++) {
if (lats_in[ii] != lats[ii])
fprintf(stderr, "\tlats_in[%d] is %d, should be %d\n", ii, lats_in[ii], lats[ii]);
}
if (nc_get_var_float(ncid, var2id, rh_in)) ERR;
for (ii = 0; ii < DIM_LEN; ii++) {
if (rh_in[ii] != rh[ii])
fprintf(stderr, "\trh_in[%d] is %g, should be %g\n", ii, rh_in[ii], rh[ii]);
}
if (nc_close(ncid)) ERR;
}
SUMMARIZE_ERR;
if (formats[format] == NC_FORMAT_NETCDF4)
{
printf("*** Test renaming attribute in sub-group for %s...",
fmt_names[format]);
{
#define DIMNAME "lon"
#define VARNAME "lon"
#define G1_VARNAME "lon"
#define OLD_NAME "units"
#define NEW_NAME "new_units"
#define CONTENTS "degrees_east"
#define RANK_lon 1
#define GRP_NAME "g1"
#define RANK_g1_lon 1
/* IDs of file, groups, dimensions, variables, attributes */
int ncid, g1_grp, lon_dim, lon_var, g1_lon_var;
size_t lon_len = 4;
char *data_in;
/* variable shapes */
int lon_dims[RANK_lon];
int g1_lon_dims[RANK_g1_lon];
if (!(data_in = malloc(strlen(CONTENTS) + 1))) ERR;
/* Create test file */
if (nc_create(file_names[format], NC_NETCDF4 | NC_CLOBBER, &ncid)) ERR;
/* Create subgroup and outer dimension */
if (nc_def_grp(ncid, GRP_NAME, &g1_grp)) ERR;
if (nc_def_dim(ncid, DIMNAME, lon_len, &lon_dim)) ERR;
/* Create outer variable and subgroup variable */
lon_dims[0] = lon_dim;
if (nc_def_var(ncid, VARNAME, NC_FLOAT, RANK_lon, lon_dims, &lon_var)) ERR;
g1_lon_dims[0] = lon_dim;
if (nc_def_var(g1_grp, G1_VARNAME, NC_FLOAT, RANK_g1_lon, g1_lon_dims, &g1_lon_var)) ERR;
/* assign per-variable attributes */
if (nc_put_att_text(ncid, lon_var, OLD_NAME, strlen(CONTENTS), CONTENTS)) ERR;
if (nc_put_att_text(g1_grp, g1_lon_var, OLD_NAME, strlen(CONTENTS), CONTENTS)) ERR;
if (nc_enddef (ncid)) ERR;
/* write variable data */
{
float lon_data[4] = {0, 90, 180, 270};
size_t start[] = {0};
size_t count[] = {4};
if (nc_put_vara(ncid, lon_var, start, count, lon_data)) ERR;
}
{
float g1_lon_data[4] = {0, 90, 180, 270};
size_t start[] = {0};
size_t count[] = {4};
if (nc_put_vara(g1_grp, g1_lon_var, start, count, g1_lon_data)) ERR;
}
if (nc_close(ncid)) ERR;
/* reopen the file and rename the attribute in the subgroup */
if (nc_open(file_names[format], NC_WRITE, &ncid)) ERR;
if (nc_inq_grp_ncid(ncid, GRP_NAME, &g1_grp)) ERR;
if (nc_inq_varid(g1_grp,VARNAME,&g1_lon_var)) ERR;
if (nc_rename_att(g1_grp, g1_lon_var, OLD_NAME, NEW_NAME)) ERR;
if (nc_close(ncid)) ERR;
/* reopen the file again and see if renamed attribute exists and
has expected value */
{
if (nc_open(file_names[format], NC_NOWRITE, &ncid)) ERR;
if (nc_inq_grp_ncid(ncid, GRP_NAME, &g1_grp)) ERR;
if (nc_inq_varid(g1_grp, VARNAME, &g1_lon_var)) ERR;
if (nc_get_att_text(g1_grp, g1_lon_var, NEW_NAME, data_in)) ERR;
if (strncmp(CONTENTS, data_in, strlen(CONTENTS))) ERR;
if (nc_close(ncid)) ERR;
}
free(data_in);
}
SUMMARIZE_ERR;
}
} /* next format */
FINAL_RESULTS;
}
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