mirror of
https://github.com/Unidata/netcdf-c.git
synced 2025-01-12 15:45:21 +08:00
d953899559
re: https://github.com/zarr-developers/zarr-specs/issues/41 After discussions with the Zarr community, it was decided to convert to a new representation of the NCZarr meta-data extensions: version 2. These extensions store information necessary to mapping the Zarr data model to the netcdf-4 data model. The basic change is to remove the NCZarr specific objects: .nczarr, .nczgroup, .nczarray, and .nczattr. The contents of these objects is moved into the corresponding existing Zarr objects as special keys. The mapping is as follows: * ''.nczarr'' => ''/.zgroup/_NCZARR_SUPERBLOCK_'' * ''.nczgroup => ''.zgroup/_NCZARR_GROUP_'' * ''.nczarray => ''.zarray/_NCZARR_ARRAY_'' * ''.nczattr => ''.zattr/_NCZARR_ATTR_'' Backward compatibility is maintained by looking for the object ''/.nczarr'' and if found, then assuming that the dataset is in the older version 1 format. This compatibility only supports reading of such version 1 datasets. Documentation and test cases are also added. Misc. Other Changes: 1. The json parsing code was added to the general library instead of nczarr only (ncjson.c, ncjson.h). 2. Improved support for different platform paths by allowing conversion to a single common path representation. 3. Add some new error codes. 4. Modify nccopy usage to mention the new chunking specification.
110 lines
3.8 KiB
CMake
110 lines
3.8 KiB
CMake
# Copyright 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
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# 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014,
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# 2015, 2016, 2017, 2018
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# University Corporation for Atmospheric Research/Unidata.
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# See netcdf-c/COPYRIGHT file for more info.
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SET(abs_top_srcdir ${CMAKE_CURRENT_SOURCE_DIR})
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remove_definitions(-DDLL_EXPORT)
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FILE(GLOB COPY_FILES ${CMAKE_CURRENT_SOURCE_DIR}/*.sh
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${CMAKE_CURRENT_SOURCE_DIR}/ref*.cdl
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${CMAKE_CURRENT_SOURCE_DIR}/ref*.txt)
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FILE(COPY ${COPY_FILES} DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/ FILE_PERMISSIONS OWNER_WRITE OWNER_READ OWNER_EXECUTE)
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IF(ENABLE_TESTS)
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SET(COMMONSRC ut_util.c ut_test.c)
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IF(USE_X_GETOPT)
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SET(COMMONSRC ${COMMONSRC} XGetopt.c)
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ENDIF()
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SET(TSTCOMMONSRC tst_utils.c)
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IF(USE_X_GETOPT)
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SET(TSTCOMMONSRC ${TSTCOMMONSRC} XGetopt.c)
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ENDIF()
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# Base tests
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# The tests are set up as a combination of shell scripts and executables that
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# must be run in a particular order. It is painful but will use macros to help
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# keep it from being too bad.
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BUILD_BIN_TEST(ut_map ${COMMONSRC})
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BUILD_BIN_TEST(ut_mapapi ${COMMONSRC})
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BUILD_BIN_TEST(ut_json ${COMMONSRC})
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BUILD_BIN_TEST(ut_projections ${COMMONSRC})
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BUILD_BIN_TEST(ut_chunking ${COMMONSRC})
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BUILD_BIN_TEST(tst_zchunks ${COMMONSRC})
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BUILD_BIN_TEST(tst_zchunks2 ${COMMONSRC})
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BUILD_BIN_TEST(tst_zchunks3 ${COMMONSRC})
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BUILD_BIN_TEST(tst_fillonlyz ${TSTCOMMONSRC})
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TARGET_INCLUDE_DIRECTORIES(ut_map PUBLIC ../libnczarr)
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TARGET_INCLUDE_DIRECTORIES(ut_mapapi PUBLIC ../libnczarr)
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TARGET_INCLUDE_DIRECTORIES(ut_json PUBLIC ../libnczarr)
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TARGET_INCLUDE_DIRECTORIES(ut_projections PUBLIC ../libnczarr)
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TARGET_INCLUDE_DIRECTORIES(ut_chunking PUBLIC ../libnczarr)
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TARGET_INCLUDE_DIRECTORIES(tst_zchunks PUBLIC ../libnczarr)
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TARGET_INCLUDE_DIRECTORIES(tst_zchunks2 PUBLIC ../libnczarr)
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TARGET_INCLUDE_DIRECTORIES(tst_zchunks3 PUBLIC ../libnczarr)
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TARGET_INCLUDE_DIRECTORIES(tst_fillonlyz PUBLIC ../libnczarr)
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# Helper programs for testing
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BUILD_BIN_TEST(zmapio ${COMMONSRC})
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TARGET_INCLUDE_DIRECTORIES(zmapio PUBLIC ../libnczarr)
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BUILD_BIN_TEST(zhex)
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BUILD_BIN_TEST(zisjson)
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TARGET_INCLUDE_DIRECTORIES(zisjson PUBLIC ../libnczarr)
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BUILD_BIN_TEST(zs3parse ${COMMONSRC})
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TARGET_INCLUDE_DIRECTORIES(zs3parse PUBLIC ../libnczarr)
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if(ENABLE_NCZARR_S3)
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BUILD_BIN_TEST(s3util ${COMMONSRC})
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TARGET_INCLUDE_DIRECTORIES(s3util PUBLIC ../libnczarr)
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endif()
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SET(ncdumpchunks_SOURCE ncdumpchunks.c)
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IF(USE_X_GETOPT)
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SET(ncdumpchunks_SOURCE ${ncdumpchunks_SOURCE} XGetopt.c)
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ENDIF()
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BUILD_BIN_TEST(ncdumpchunks ${ncdumpchunks_SOURCE})
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TARGET_INCLUDE_DIRECTORIES(ncdumpchunks PUBLIC ../libnczarr)
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IF(BUILD_UTILITIES)
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add_sh_test(nczarr_test run_ut_map)
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add_sh_test(nczarr_test run_ut_mapapi)
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add_sh_test(nczarr_test run_ut_misc)
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add_sh_test(nczarr_test run_ut_chunk)
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IF(USE_HDF5)
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add_sh_test(nczarr_test run_nccopyz)
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add_sh_test(nczarr_test run_fillonlyz)
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ENDIF()
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add_sh_test(nczarr_test run_ncgen4)
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BUILD_BIN_TEST(tst_chunkcases ${TSTCOMMONSRC})
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TARGET_INCLUDE_DIRECTORIES(tst_chunkcases PUBLIC ../libnczarr)
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add_sh_test(nczarr_test run_chunkcases)
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add_sh_test(nczarr_test run_purezarr)
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add_sh_test(nczarr_test run_interop)
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add_sh_test(nczarr_test run_misc)
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if(ENABLE_NCZARR_S3)
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add_sh_test(nczarr_test run_s3_cleanup)
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ENDIF()
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if(ENABLE_NCZARR_ZIP)
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add_sh_test(nczarr_test run_newformat)
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endif()
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ENDIF(BUILD_UTILITIES)
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ENDIF(ENABLE_TESTS)
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## Specify files to be distributed by 'make dist'
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FILE(GLOB CUR_EXTRA_DIST RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} ${CMAKE_CURRENT_SOURCE_DIR}/*.c ${CMAKE_CURRENT_SOURCE_DIR}/*.h ${CMAKE_CURRENT_SOURCE_DIR}/*.sh ${CMAKE_CURRENT_SOURCE_DIR}/*.cdl)
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SET(CUR_EXTRA_DIST ${CUR_EXTRA_DIST} CMakeLists.txt Makefile.am zmapio.c zhex.c ncdumpchunks.c)
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ADD_EXTRA_DIST("${CUR_EXTRA_DIST}")
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