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netcdf-c/ncdump/Makefile.am
Dennis Heimbigner f3218a2e2c Use the built-in HDF5 byte-range reader, if available. 
re: Issue https://github.com/Unidata/netcdf-c/issues/1848

The existing Virtual File Driver built to support byte-range
read-only file access is quite old. It turns out to be extremely
slow (reason unknown at the moment).

Starting with HDF5 1.10.6, the HDF5 library has its own version
of such a file driver. The HDF5 developers have better knowledge
about building such a driver and what incantations are needed to
get good performance.

This PR modifies the byte-range code in hdf5open.c so
that if the HDF5 file driver is available, then it is used
in preference to the one written by the Netcdf group.

Misc. Other Changes:

1. Moved all of nc4print code to ncdump to keep appveyor quiet.
2020-09-24 14:33:58 -06:00

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## This is a automake file, part of Unidata's netCDF package.
# Copyright 2018, see the COPYRIGHT file for more information.
# This file builds and runs the ncdump program.
# Ed Hartnett, Dennis Heimbigner, Ward Fisher
#SH_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
#sh_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
#LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver-verbose
#TESTS_ENVIRONMENT += export SETX=1;
# Put together AM_CPPFLAGS and AM_LDFLAGS.
include $(top_srcdir)/lib_flags.am
LDADD = ${top_builddir}/liblib/libnetcdf.la
noinst_PROGRAMS=
# Note which tests depend on other tests. Necessary for make -j check.
TEST_EXTENSIONS = .sh
XFAIL_TESTS=""
if ! ENABLE_UNFIXED_MEMORY_LEAKS
AM_TESTS_ENVIRONMENT += export NC_VLEN_NOTEST=1;
endif
# This is the program we're building, and it's sources.
bin_PROGRAMS = ncdump
ncdump_SOURCES = ncdump.c vardata.c dumplib.c indent.c nctime0.c \
ncdump.h vardata.h dumplib.h indent.h nctime0.h cdl.h utils.h \
utils.c nciter.h nciter.c nccomps.h
# Another utility program that copies any netCDF file using only the
# netCDF API
bin_PROGRAMS += nccopy
nccopy_SOURCES = nccopy.c nciter.c nciter.h chunkspec.h chunkspec.c \
utils.h utils.c dimmap.h dimmap.c list.c list.h
# Wei-keng Liao's (wkliao@eecs.northwestern.edu)
# netcdf-3 validator program
# (https://github.com/Parallel-NetCDF/PnetCDF/blob/master/src/utils/ncvalidator/ncvalidator.c)
# that prints out the structure of a netcdf-3 file.
# This program is built but not installed.
noinst_PROGRAMS += ncvalidator
ncvalidator_SOURCES = ncvalidator.c
# A simple netcdf-4 metadata -> xml printer. Do not install.
if USE_HDF5
bin_PROGRAMS += nc4print
noinst_PROGRAMS += nc4print
nc4print_SOURCES = nc4print.c nc4printer.c
endif
# Conditionally build the ocprint program, but do not install
if ENABLE_DAP
bin_PROGRAMS += ocprint
noinst_PROGRAMS += ocprint
ocprint_SOURCES = ocprint.c
endif
# This is the man page.
man_MANS = ncdump.1 nccopy.1
if BUILD_TESTSETS
# C programs needed by shell scripts for classic tests.
check_PROGRAMS = rewrite-scalar ref_ctest ref_ctest64 ncdump tst_utf8 \
bom tst_dimsizes nctrunc
# Tests for classic and 64-bit offset files.
TESTS = tst_inttags.sh run_tests.sh tst_64bit.sh ref_ctest \
ref_ctest64 tst_output.sh tst_lengths.sh tst_calendars.sh \
run_utf8_tests.sh test_unicode_directory.sh tst_nccopy3.sh tst_nccopy3_subset.sh \
tst_charfill.sh tst_iter.sh tst_formatx3.sh tst_bom.sh \
tst_dimsizes.sh run_ncgen_tests.sh tst_ncgen4_classic.sh test_radix.sh
# The tst_nccopy3.sh test uses output from a bunch of other
# tests. This records the dependency so parallel builds work.
tst_nccopy3.log: tst_calendars.log run_utf8_tests.log tst_output.log \
tst_64bit.log run_tests.log tst_lengths.log
TESTS += tst_null_byte_padding.sh
if USE_STRICT_NULL_BYTE_HEADER_PADDING
XFAIL_TESTS += tst_null_byte_padding.sh
endif
if LARGE_FILE_TESTS
TESTS += tst_iter.sh
endif
if USE_HDF5
# HDF5 has some extra C programs to build. These will be run by
# the shell script tests.
check_PROGRAMS += tst_fileinfo tst_create_files tst_h_rdc0 \
tst_group_data tst_enum_data tst_opaque_data tst_string_data \
tst_vlen_data tst_comp tst_comp2 tst_nans tst_special_atts \
tst_unicode tst_fillbug tst_compress tst_chunking tst_h_scalar
check_PROGRAMS += tst_vlen_demo
# Tests for netCDF-4 behavior.
TESTS += tst_fileinfo.sh tst_hdf5_offset.sh tst_inttags4.sh \
tst_netcdf4.sh tst_fillbug.sh tst_netcdf4_4.sh tst_nccopy4.sh \
tst_nccopy5.sh tst_grp_spec.sh tst_mud.sh tst_h_scalar.sh tst_formatx4.sh \
run_utf8_nc4_tests.sh run_back_comp_tests.sh run_ncgen_nc4_tests.sh \
tst_ncgen4.sh
# Record interscript dependencies so parallel builds work.
tst_nccopy4.log: run_ncgen_tests.log tst_output.log tst_ncgen4.log \
tst_fillbug.log tst_netcdf4_4.log tst_h_scalar.log
tst_nccopy5.log: tst_nccopy4.log
endif #!USE_HDF5
TESTS += tst_inmemory_nc3.sh tst_nccopy_w3.sh
if USE_HDF5
TESTS += tst_inmemory_nc4.sh tst_nccopy_w4.sh
endif
if USE_HDF5
# Re-activate the ncgen -lc tests
TESTS += tst_ctests.sh
endif
endif BUILD_TESTSETS
# These files all have to be included with the distribution.
EXTRA_DIST = run_tests.sh tst_64bit.sh tst_output.sh test0.cdl \
ref_ctest1_nc4.cdl ref_ctest1_nc4c.cdl ref_tst_solar_1.cdl \
ref_tst_solar_2.cdl tst_netcdf4.sh tst_netcdf4_4.sh ref_tst_small.cdl \
tst_lengths.sh tst_ncml.cdl ref1.ncml ref_tst_group_data.cdl \
ref_tst_enum_data.cdl ref_tst_opaque_data.cdl ref_tst_string_data.cdl \
ref_tst_vlen_data.cdl ref_tst_comp.cdl ref_tst_unicode.cdl \
ref_tst_nans.cdl small.cdl small2.cdl $(man_MANS) run_utf8_tests.sh \
ref_tst_utf8.cdl ref_tst_fillbug.cdl tst_fillbug.sh tst_calendars.cdl \
tst_calendars.sh ref_times.cdl ref_tst_special_atts.cdl \
ref_tst_noncoord.cdl ref_tst_compounds2.nc ref_tst_compounds2.cdl \
ref_tst_compounds3.nc ref_tst_compounds3.cdl ref_tst_compounds4.nc \
ref_tst_compounds4.cdl ref_tst_group_data_v23.cdl tst_mslp.cdl \
tst_bug321.cdl ref_tst_format_att.cdl ref_tst_format_att_64.cdl \
tst_nccopy3.sh tst_nccopy4.sh tst_nccopy5.sh \
ref_nc_test_netcdf4_4_0.nc run_back_comp_tests.sh \
ref_nc_test_netcdf4.cdl ref_tst_special_atts3.cdl tst_brecs.cdl \
ref_tst_grp_spec0.cdl ref_tst_grp_spec.cdl tst_grp_spec.sh \
ref_tst_charfill.cdl tst_charfill.cdl tst_charfill.sh tst_iter.sh \
tst_mud.sh ref_tst_mud4.cdl ref_tst_mud4-bc.cdl \
ref_tst_mud4_chars.cdl inttags.cdl inttags4.cdl ref_inttags.cdl \
ref_inttags4.cdl ref_tst_ncf213.cdl tst_h_scalar.sh \
run_utf8_nc4_tests.sh tst_formatx3.sh tst_formatx4.sh \
ref_tst_utf8_4.cdl ref_tst_nc4_utf8_4.cdl tst_inttags.sh \
tst_inttags4.sh CMakeLists.txt tst_bom.sh tst_inmemory_nc3.sh \
tst_dimsizes.sh tst_inmemory_nc4.sh tst_fileinfo.sh \
run_ncgen_tests.sh ref_test_360_day_1900.nc ref_test_365_day_1900.nc \
ref_test_366_day_1900.nc ref_test_360_day_1900.cdl \
ref_test_365_day_1900.cdl ref_test_366_day_1900.cdl \
tst_hdf5_offset.sh run_ncgen_nc4_tests.sh tst_nccopy3_subset.sh \
ref_nccopy3_subset.nc ref_test_corrupt_magic.nc tst_ncgen_shared.sh \
tst_ncgen4.sh tst_ncgen4_classic.sh tst_ncgen4_diff.sh \
tst_ncgen4_cycle.sh tst_null_byte_padding.sh \
ref_null_byte_padding_test.nc ref_tst_irish_rover.nc \
ref_provenance_v1.nc ref_tst_radix.cdl tst_radix.cdl test_radix.sh \
ref_nccopy_w.cdl tst_nccopy_w3.sh tst_nccopy_w4.sh \
ref_no_ncproperty.nc test_unicode_directory.sh \
ref_roman_szip_simple.cdl ref_roman_szip_unlim.cdl ref_tst_perdimspecs.cdl
# The L512.bin file is file containing exactly 512 bytes each of value 0.
# It is used for creating hdf5 files with varying offsets for testing.
EXTRA_DIST += L512.bin
EXTRA_DIST += tst_ctests.sh ref_ctest_small_3.c ref_ctest_small_4.c \
ref_ctest_special_atts_4.c
# CDL files and Expected results
SUBDIRS = cdl expected
CLEANFILES = tst_*.nc tmp*.nc test*.nc iter.* tmp*.cdl \
tst_output_*.cdl tst_output_*.c tst_utf8_*.cdl *.tmp tst_tst8.cdl \
tst_netcdf4_*.cdl test1_ncdump.cdl test2_ncdump.cdl test1.cdl \
ctest1.cdl test1_cdf5.cdl test2_cdf5.cdl test1_offset.cdl \
test2_offset.cdl ctest0.nc ctest0_64.nc c1.cdl c1_4.cdl ctest1_64.cdl \
c0.nc c0_4.nc small.nc small2.nc c0tmp.nc c1.ncml utf8.cdl \
utf8_64.cdl utf8.nc utf8_64.nc nc4_utf8.cdl nc4_utf8.nc \
tst_unicode.cdl tst_group_data.cdl tst_compounds2.cdl tst_comp.cdl \
tst_enum_data.cdl tst_small.cdl tst_times.cdl tst_solar_2.cdl \
tst_string_data.cdl tst_fillbug.cdl tst_opaque_data.cdl \
tst_compounds4.cdl tst_utf8.cdl tst_compounds3.cdl \
tst_special_atts.cdl tst_nans.cdl tst_format_att_64.cdl \
tst_vlen_data.cdl tst_solar_1.cdl tst_format_att.cdl \
tst_nc_test_netcdf4_4_0.cdl tst_mud4.cdl tst_mud4-bc.cdl \
tst_ncf213.cdl tst_h_scalar.cdl tst_mud4_chars.cdl inttags.nc \
inttags4.nc tst_inttags.cdl tst_inttags4.cdl nc4_fileinfo.nc \
hdf5_fileinfo.hdf nccopy3_subset_out.nc c5.nc \
compound_datasize_test.nc compound_datasize_test2.nc ncf199.nc \
tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl \
tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl \
tst_ncf199.cdl tst_tst_gattenum.cdl tst_tst_usuffix.cdl ctest.c \
ctest64.c nccopy3_subset_out.nc camrun.c tst_ncf213.cdl tst_ncf213.nc \
tst_radix.nc tmp_radix.cdl ctest_small_3.c ctest_small_4.c \
ctest_special_atts_4.c tst_roman_szip_simple.cdl \
tst_roman_szip_unlim.cdl tst_perdimpspecs.nc tmppds.*
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