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c740f47895
netcdf-c/nc_test/tst_small.c
Ward Fisher c740f47895 Corrected for no CDF5 support.
2017-09-15 17:29:10 -06:00

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/* This is part of the netCDF package. Copyright 2005 University
Corporation for Atmospheric Research/Unidata See COPYRIGHT file for
conditions of use. See www.unidata.ucar.edu for more info.
Test small files.
$Id: tst_small.c 2796 2014-10-28 03:40:29Z wkliao $
*/
#include "config.h"
#include <nc_tests.h>
#include "err_macros.h"
#include <netcdf.h>
#ifdef USE_PNETCDF
#include <netcdf_par.h>
#endif
/* Test everything for classic, 64-bit offset, 64-bit data files. If netcdf-4 is
* included, that means another whole round of testing. */
#define NUM_FORMATS (5)
#define ATT_NAME "Atom"
#define MAX_LEN 7
#define ERR2 { \
err++; \
fprintf(stderr, "Sorry! Unexpected result, %s, line: %d (%s)\n", \
__FILE__, __LINE__, nc_strerror(stat)); \
exit(1); \
}
#ifdef USE_PNETCDF
#define FMTCHECK {\
int format; \
nc_inq_format_extended(ncid,&format,NULL); \
if (format == NC_FORMATX_PNETCDF) { \
if (nc_var_par_access(ncid, varid, NC_COLLECTIVE)) ERR;\
}\
}
#else
#define FMTCHECK
#endif
static int file_create(const char *filename, int cmode, int *ncid)
{
int err;
/* get the default file format */
int default_format;
nc_set_default_format(NC_FORMAT_CLASSIC, &default_format);
/* set it back to the default */
nc_set_default_format(default_format, NULL);
#ifdef USE_PNETCDF
if (default_format == NC_FORMAT_CLASSIC ||
default_format == NC_FORMAT_64BIT_OFFSET ||
|| default_format == NC_FORMAT_64BIT_DATA)
err = nc_create_par(filename, cmode|NC_PNETCDF, MPI_COMM_WORLD, MPI_INFO_NULL, ncid);
else
#endif
err = nc_create(filename, cmode, ncid);
return err;
}
static int file_open(const char *filename, int omode, int *ncid)
{
int err;
/* get the default file format */
int default_format;
err = nc_set_default_format(NC_FORMAT_CLASSIC, &default_format);
/* set it back to the default */
err = nc_set_default_format(default_format, NULL);
#ifdef USE_PNETCDF
if (default_format == NC_FORMAT_CLASSIC ||
default_format == NC_FORMAT_64BIT_OFFSET ||
default_format == NC_FORMAT_64BIT_DATA)
err = nc_open_par(filename, omode|NC_PNETCDF, MPI_COMM_WORLD, MPI_INFO_NULL, ncid);
else
#endif
err = nc_open(filename, omode, ncid);
return err;
}
static int
test_small_atts(const char *testfile)
{
int ncid;
char att[MAX_LEN + 1], att_in[MAX_LEN + 1], source[MAX_LEN + 1] = "0123456";
int ndims, nvars, natts, unlimdimid;
size_t len_in;
int t, f;
/* Run this with and without fill mode. */
for (f = 0; f < 2; f++)
{
/* Create small files with an attribute that grows by one each
* time. */
for (t = 1; t < MAX_LEN; t++)
{
/* Create null-terminated text string of correct length. */
strncpy(att, source, t);
att[t] = '\0';
/* Create a file with one attribute. */
if (file_create(testfile, NC_CLOBBER, &ncid)) ERR;
if (nc_put_att_text(ncid, NC_GLOBAL, ATT_NAME, t + 1, att)) ERR;
if (f && nc_set_fill(ncid, NC_NOFILL, NULL)) ERR;
if (nc_close(ncid)) ERR;
/* Reopen the file and check it. */
if (file_open(testfile, NC_NOWRITE, &ncid)) ERR;
if (nc_inq(ncid, &ndims, &nvars, &natts, &unlimdimid)) ERR;
if (ndims != 0 && nvars != 0 && natts != 1 && unlimdimid != -1) ERR;
if (nc_inq_attlen(ncid, NC_GLOBAL, ATT_NAME, &len_in)) ERR;
if (len_in != t + 1) ERR;
if (nc_get_att_text(ncid, NC_GLOBAL, ATT_NAME, att_in)) ERR;
if (strncmp(att_in, att, t)) ERR;
if (nc_close(ncid)) ERR;
}
}
return 0;
}
#define DIM1_NAME "Time"
#define DIM2_NAME "DataStrLen"
#define VAR_NAME "Times"
#define STR_LEN 19
#define NUM_VALS 2
#define NDIMS 2
#define TITLE " OUTPUT FROM WRF V2.0.3.1 MODEL"
#define ATT_NAME2 "TITLE"
/* Test a small file with an unlimited dimension. NOTE: Normally I
* write a NULL terminator for my attributes and text strings, but
* this reproduces a bug that a fortran user sent us. So string data
* are written to the file without null terminators. - Ed */
static int
test_small_unlim(const char *testfile)
{
int ncid, dimids[NDIMS], varid, stat;
char data[NUM_VALS][STR_LEN + 1], data_in[NUM_VALS][STR_LEN];
int ndims, nvars, natts, unlimdimid;
size_t i, start[NDIMS], count[NDIMS];
/* Create null-terminated text strings of correct length. */
/*for (i = 0; i < NUM_VALS; i++)
strcpy(data[i], source);*/
strcpy(data[0], "2005-04-11_12:00:00");
strcpy(data[1], "2005-04-11_13:00:00");
/* Create a file with two dimensions, one unlimited, and one
* var, and a global att. */
if (file_create(testfile, NC_CLOBBER, &ncid)) ERR;
if (nc_def_dim(ncid, DIM1_NAME, NC_UNLIMITED, dimids)) ERR;
if (nc_def_dim(ncid, DIM2_NAME, STR_LEN, &dimids[1])) ERR;
if (nc_def_var(ncid, VAR_NAME, NC_CHAR, 2, dimids, &varid)) ERR;
if (nc_put_att_text(ncid, NC_GLOBAL, ATT_NAME2, strlen(TITLE), TITLE)) ERR;
if (nc_enddef(ncid)) ERR;
/* Write some records of var data. */
count[0] = 1;
count[1] = STR_LEN;
start[1] = 0;
FMTCHECK;
for (start[0] = 0; start[0] < NUM_VALS; start[0]++)
if ((stat=nc_put_vara_text(ncid, varid, start, count, data[start[0]]))!=NC_NOERR) ERR2;
/* We're done! */
if (nc_close(ncid)) ERR;
/* Reopen the file and check it. */
if (file_open(testfile, NC_NOWRITE, &ncid)) ERR;
if (nc_inq(ncid, &ndims, &nvars, &natts, &unlimdimid)) ERR;
if (ndims != 2 && nvars != 1 && natts != 0 && unlimdimid != 0) ERR;
if (nc_get_var_text(ncid, varid, (char *)data_in)) ERR;
for (i = 0; i < NUM_VALS; i++)
if (strncmp(data[i], data_in[i], STR_LEN)) ERR;
if (nc_close(ncid)) ERR;
return 0;
}
/* Test a small file with a fixed dimension. */
static int
test_small_fixed(const char *testfile)
{
int ncid, dimids[NDIMS], varid;
char data[NUM_VALS][STR_LEN + 1], data_in[NUM_VALS][STR_LEN];
int ndims, nvars, natts, unlimdimid;
size_t i, start[NDIMS], count[NDIMS];
/* Create null-terminated text strings of correct length. */
/*for (i = 0; i < NUM_VALS; i++)
strcpy(data[i], source);*/
strcpy(data[0], "2005-04-11_12:00:00");
strcpy(data[1], "2005-04-11_13:00:00");
/* Create a file with two dimensions, one unlimited, and one
* var, and a global att. */
if (file_create(testfile, NC_CLOBBER, &ncid)) ERR;
if (nc_def_dim(ncid, DIM1_NAME, NUM_VALS, dimids)) ERR;
if (nc_def_dim(ncid, DIM2_NAME, STR_LEN, &dimids[1])) ERR;
if (nc_def_var(ncid, VAR_NAME, NC_CHAR, NDIMS, dimids, &varid)) ERR;
if (nc_put_att_text(ncid, NC_GLOBAL, ATT_NAME2, strlen(TITLE), TITLE)) ERR;
if (nc_enddef(ncid)) ERR;
/* Write some records of var data. */
count[0] = 1;
count[1] = STR_LEN;
start[1] = 0;
for (start[0] = 0; start[0] < NUM_VALS; start[0]++)
if (nc_put_vara_text(ncid, varid, start, count, data[start[0]])) ERR;
/* We're done! */
if (nc_close(ncid)) ERR;
/* Reopen the file and check it. */
if (file_open(testfile, NC_NOWRITE, &ncid)) ERR;
if (nc_inq(ncid, &ndims, &nvars, &natts, &unlimdimid)) ERR;
if (ndims != 2 && nvars != 1 && natts != 0 && unlimdimid != -1) ERR;
if (nc_get_var_text(ncid, varid, (char *)data_in)) ERR;
for (i = 0; i < NUM_VALS; i++)
if (strncmp(data[i], data_in[i], STR_LEN)) ERR;
if (nc_close(ncid)) ERR;
return 0;
}
/* Test a small file with one var. */
static int
test_small_one(const char *testfile)
{
int ncid, dimid, varid;
char data = 'h', data_in;
int ndims, nvars, natts, unlimdimid;
size_t start[NDIMS], count[NDIMS];
/* Create a file with one ulimited dimensions, and one var. */
if (file_create(testfile, NC_CLOBBER, &ncid)) ERR;
if (nc_def_dim(ncid, DIM1_NAME, NC_UNLIMITED, &dimid)) ERR;
if (nc_def_var(ncid, VAR_NAME, NC_CHAR, 1, &dimid, &varid)) ERR;
if (nc_enddef(ncid)) ERR;
/* Write one record of var data, a single character. */
count[0] = 1;
start[0] = 0;
FMTCHECK;
if (nc_put_vara_text(ncid, varid, start, count, &data)) ERR;
/* We're done! */
if (nc_close(ncid)) ERR;
/* Reopen the file and check it. */
if (file_open(testfile, NC_NOWRITE, &ncid)) ERR;
if (nc_inq(ncid, &ndims, &nvars, &natts, &unlimdimid)) ERR;
if (ndims != 1 && nvars != 1 && natts != 0 && unlimdimid != 0) ERR;
if (nc_get_var_text(ncid, varid, &data_in)) ERR;
if (data_in != data) ERR;
if (nc_close(ncid)) ERR;
return 0;
}
#define ONE_DIM 1
#define MAX_RECS 10
/* Test a small file with one record var, which grows. */
static int
test_one_growing(const char *testfile)
{
int ncid, dimid, varid;
char data[MAX_RECS], data_in;
size_t start[ONE_DIM], count[ONE_DIM], index[ONE_DIM], len_in;
int r, f;
/* Create some phoney data. */
for (data[0] = 'a', r = 1; r < MAX_RECS; r++)
data[r] = data[r - 1] + 1;
/* Run this with and without fill mode. */
for (f = 0; f < 2; f++)
{
/* Create a file with one ulimited dimensions, and one var. */
if (file_create(testfile, NC_CLOBBER, &ncid)) ERR;
if (nc_def_dim(ncid, DIM1_NAME, NC_UNLIMITED, &dimid)) ERR;
if (nc_def_var(ncid, VAR_NAME, NC_CHAR, 1, &dimid, &varid)) ERR;
if (nc_close(ncid)) ERR;
/* Normally one would not close and reopen the file for each
* record, but I am giving the library a little work-out here... */
for (r = 0; r < MAX_RECS; r++)
{
/* Write one record of var data, a single character. */
if (file_open(testfile, NC_WRITE, &ncid)) ERR;
if (f) {
int format;
nc_inq_format_extended(ncid,&format,NULL);
if (format == NC_FORMATX_PNETCDF) {
/* in PnetCDF, nc_set_fill() can only be called in define mode */
if (nc_redef(ncid)) ERR;
if (nc_set_fill(ncid, NC_NOFILL, NULL)) ERR;
if (nc_enddef(ncid)) ERR;
}
else { /* test_netcdf4 */
if (nc_set_fill(ncid, NC_NOFILL, NULL)) ERR;
}
}
count[0] = 1;
start[0] = r;
FMTCHECK;
if (nc_put_vara_text(ncid, varid, start, count, &data[r])) ERR;
if (nc_close(ncid)) ERR;
/* Reopen the file and check it. */
if (file_open(testfile, NC_NOWRITE, &ncid)) ERR;
if (nc_inq_dimlen(ncid, 0, &len_in)) ERR;
if (len_in != r + 1) ERR;
index[0] = r;
if (nc_get_var1_text(ncid, 0, index, &data_in)) ERR;
if (data_in != data[r]) ERR;
if (nc_close(ncid)) ERR;
} /* Next record. */
}
return 0;
}
#define ONE_DIM 1
#define MAX_RECS 10
/* Test a small file with one record var, which grows, and has
* attributes. */
static int
test_one_growing_with_att(const char *testfile)
{
int ncid, dimid, varid;
char data[MAX_RECS], data_in;
char att_name[NC_MAX_NAME + 1];
size_t start[ONE_DIM], count[ONE_DIM], index[ONE_DIM], len_in;
int r;
/* Create a file with one ulimited dimensions, and one var. */
if (file_create(testfile, NC_CLOBBER, &ncid)) ERR;
if (nc_def_dim(ncid, DIM1_NAME, NC_UNLIMITED, &dimid)) ERR;
if (nc_def_var(ncid, VAR_NAME, NC_CHAR, 1, &dimid, &varid)) ERR;
if (nc_close(ncid)) ERR;
/* Create some phoney data. */
for (data[0] = 'a', r = 1; r < MAX_RECS; r++)
data[r] = data[r - 1] + 1;
/* Normally one would not close and reopen the file for each
* record, nor add an attribute each time I add a record, but I am
* giving the library a little work-out here... */
for (r = 0; r < MAX_RECS; r++)
{
/* Write one record of var data, a single character. */
if (file_open(testfile, NC_WRITE, &ncid)) ERR;
count[0] = 1;
start[0] = r;
FMTCHECK;
if (nc_put_vara_text(ncid, varid, start, count, &data[r])) ERR;
sprintf(att_name, "a_%d", data[r]);
if (nc_redef(ncid)) ERR;
if (nc_put_att_text(ncid, varid, att_name, 1, &data[r])) ERR;
if (nc_close(ncid)) ERR;
/* Reopen the file and check it. */
if (file_open(testfile, NC_NOWRITE, &ncid)) ERR;
if (nc_inq_dimlen(ncid, 0, &len_in)) ERR;
if (len_in != r + 1) ERR;
index[0] = r;
if (nc_get_var1_text(ncid, 0, index, &data_in)) ERR;
if (data_in != data[r]) ERR;
if (nc_get_att_text(ncid, varid, att_name, &data_in)) ERR;
if (data_in != data[r]) ERR;
if (nc_close(ncid)) ERR;
} /* Next record. */
return 0;
}
#define VAR_NAME2 "var2"
#define NUM_VARS 2
/* Test a small file with two record vars, which grow, and has
* attributes added. */
static int
test_two_growing_with_att(const char *testfile)
{
int ncid, dimid, varid[NUM_VARS];
char data[MAX_RECS], data_in;
char att_name[NC_MAX_NAME + 1];
size_t start[ONE_DIM], count[ONE_DIM], index[ONE_DIM], len_in;
int v, r;
/* Create a file with one ulimited dimensions, and one var. */
if (file_create(testfile, NC_CLOBBER, &ncid)) ERR;
if (nc_def_dim(ncid, DIM1_NAME, NC_UNLIMITED, &dimid)) ERR;
if (nc_def_var(ncid, VAR_NAME, NC_CHAR, 1, &dimid, &varid[0])) ERR;
if (nc_def_var(ncid, VAR_NAME2, NC_CHAR, 1, &dimid, &varid[1])) ERR;
if (nc_close(ncid)) ERR;
/* Create some phoney data. */
for (data[0] = 'a', r = 1; r < MAX_RECS; r++)
data[r] = data[r - 1] + 1;
/* Normally one would not close and reopen the file for each
* record, nor add an attribute each time I add a record, but I am
* giving the library a little work-out here... */
for (r = 0; r < MAX_RECS; r++)
{
/* Write one record of var data, a single character. */
if (file_open(testfile, NC_WRITE, &ncid)) ERR;
#ifdef USE_PNETCDF
{int format;
nc_inq_format_extended(ncid,&format,NULL);
if (format == NC_FORMATX_PNETCDF) {
for (v = 0; v < NUM_VARS; v++) {
if (nc_var_par_access(ncid, varid[v], NC_COLLECTIVE)) ERR;
}
}}
#endif
count[0] = 1;
start[0] = r;
sprintf(att_name, "a_%d", data[r]);
for (v = 0; v < NUM_VARS; v++)
{
if (nc_put_vara_text(ncid, varid[v], start, count, &data[r])) ERR;
if (nc_redef(ncid)) ERR;
if (nc_put_att_text(ncid, varid[v], att_name, 1, &data[r])) ERR;
if (nc_enddef(ncid)) ERR;
}
if (nc_close(ncid)) ERR;
/* Reopen the file and check it. */
if (file_open(testfile, NC_NOWRITE, &ncid)) ERR;
if (nc_inq_dimlen(ncid, 0, &len_in)) ERR;
if (len_in != r + 1) ERR;
index[0] = r;
for (v = 0; v < NUM_VARS; v++)
{
if (nc_get_var1_text(ncid, varid[v], index, &data_in)) ERR;
if (data_in != data[r]) ERR;
}
if (nc_close(ncid)) ERR;
} /* Next record. */
return 0;
}
/* Test a small file with one var and one att. */
static int
test_one_with_att(const char *testfile)
{
int ncid, dimid, varid;
char data = 'h', data_in;
int ndims, nvars, natts, unlimdimid;
size_t start[NDIMS], count[NDIMS];
/* Create a file with one ulimited dimensions, and one var. */
if (file_create(testfile, NC_CLOBBER, &ncid)) ERR;
if (nc_def_dim(ncid, DIM1_NAME, NC_UNLIMITED, &dimid)) ERR;
if (nc_def_var(ncid, VAR_NAME, NC_CHAR, 1, &dimid, &varid)) ERR;
if (nc_put_att_text(ncid, NC_GLOBAL, ATT_NAME, 1, &data)) ERR;
if (nc_enddef(ncid)) ERR;
/* Write one record of var data, a single character. */
count[0] = 1;
start[0] = 0;
FMTCHECK;
if (nc_put_vara_text(ncid, varid, start, count, &data)) ERR;
/* We're done! */
if (nc_close(ncid)) ERR;
/* Reopen the file and check it. */
if (file_open(testfile, NC_NOWRITE, &ncid)) ERR;
if (nc_inq(ncid, &ndims, &nvars, &natts, &unlimdimid)) ERR;
if (ndims != 1 && nvars != 1 && natts != 0 && unlimdimid != 0) ERR;
if (nc_get_var_text(ncid, varid, &data_in)) ERR;
if (data_in != data) ERR;
if (nc_get_att_text(ncid, NC_GLOBAL, ATT_NAME, &data_in)) ERR;
if (data_in != data) ERR;
if (nc_close(ncid)) ERR;
return 0;
}
int
main(int argc, char **argv)
{
int i;
char testfile[NC_MAX_NAME + 1];
#ifdef USE_PNETCDF
MPI_Init(&argc, &argv);
#endif
printf("\n*** Testing small files.\n");
/*nc_set_log_level(3);*/
/* Go thru formats and run all tests for each of two (for netCDF-3
* only builds), or 4 (for netCDF-4 builds) different formats. */
for (i = NUM_FORMATS; i >= 1; i--)
{
switch (i)
{
case NC_FORMAT_CLASSIC:
nc_set_default_format(NC_FORMAT_CLASSIC, NULL);
printf("Switching to netCDF classic format.\n");
strcpy(testfile, "tst_small_classic.nc");
break;
case NC_FORMAT_64BIT_OFFSET:
nc_set_default_format(NC_FORMAT_64BIT_OFFSET, NULL);
printf("Switching to 64-bit offset format.\n");
strcpy(testfile, "tst_small_64bit.nc");
break;
#ifdef USE_CDF5
case NC_FORMAT_CDF5:
nc_set_default_format(NC_FORMAT_CDF5, NULL);
printf("Switching to 64-bit data format.\n");
strcpy(testfile, "tst_small_cdf5.nc");
break;
#else
case NC_FORMAT_CDF5:
continue;
#endif
#ifdef USE_NETCDF4
case NC_FORMAT_NETCDF4_CLASSIC:
nc_set_default_format(NC_FORMAT_NETCDF4_CLASSIC, NULL);
strcpy(testfile, "tst_small_netcdf4_classic.nc");
printf("Switching to netCDF-4 format (with NC_CLASSIC_MODEL).\n");
break;
case NC_FORMAT_NETCDF4: /* actually it's _CLASSIC. */
nc_set_default_format(NC_FORMAT_NETCDF4, NULL);
strcpy(testfile, "tst_small_netcdf4.nc");
printf("Switching to netCDF-4 format.\n");
break;
#else
case NC_FORMAT_NETCDF4_CLASSIC:
case NC_FORMAT_NETCDF4:
continue; /* loop i */
#endif
default:
printf("Unexpected format!\n");
return 2;
}
printf("*** testing simple small file with a global attribute...");
test_small_atts(testfile);
SUMMARIZE_ERR;
printf("*** testing simple small file with fixed dimensions...");
test_small_fixed(testfile);
SUMMARIZE_ERR;
printf("*** testing simple small file with an unlimited dimension...");
test_small_unlim(testfile);
SUMMARIZE_ERR;
printf("*** testing small file with one variable...");
test_small_one(testfile);
SUMMARIZE_ERR;
printf("*** testing small file with one variable and one att...");
test_one_with_att(testfile);
SUMMARIZE_ERR;
printf("*** testing small file with one record variable, which grows...");
test_one_growing(testfile);
SUMMARIZE_ERR;
printf("*** testing small file with one growing record "
"variable, with attributes added...");
test_one_growing_with_att(testfile);
SUMMARIZE_ERR;
printf("*** testing small file with two growing record "
"variables, with attributes added...");
test_two_growing_with_att(testfile);
SUMMARIZE_ERR;
}
#ifdef USE_PNETCDF
MPI_Finalize();
#endif
FINAL_RESULTS;
}
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