netcdf-c/libdispatch/drc.c
Dennis Heimbigner bf2746b8ea Provide byte-range reading of remote datasets
re: issue https://github.com/Unidata/netcdf-c/issues/1251

Assume that you have the URL to a remote dataset
which is a normal netcdf-3 or netcdf-4 file.

This PR allows the netcdf-c to read that dataset's
contents as a netcdf file using HTTP byte ranges
if the remote server supports byte-range access.

Originally, this PR was set up to access Amazon S3 objects,
but it can also access other remote datasets such as those
provided by a Thredds server via the HTTPServer access protocol.
It may also work for other kinds of servers.

Note that this is not intended as a true production
capability because, as is known, this kind of access to
can be quite slow. In addition, the byte-range IO drivers
do not currently do any sort of optimization or caching.

An additional goal here is to gain some experience with
the Amazon S3 REST protocol.

This architecture and its use documented in
the file docs/byterange.dox.

There are currently two test cases:

1. nc_test/tst_s3raw.c - this does a simple open, check format, close cycle
   for a remote netcdf-3 file and a remote netcdf-4 file.
2. nc_test/test_s3raw.sh - this uses ncdump to investigate some remote
   datasets.

This PR also incorporates significantly changed model inference code
(see the superceded PR https://github.com/Unidata/netcdf-c/pull/1259).

1. It centralizes the code that infers the dispatcher.
2. It adds support for byte-range URLs

Other changes:

1. NC_HDF5_finalize was not being properly called by nc_finalize().
2. Fix minor bug in ncgen3.l
3. fix memory leak in nc4info.c
4. add code to walk the .daprc triples and to replace protocol=
   fragment tag with a more general mode= tag.

Final Note:
Th inference code is still way too complicated. We need to move
to the validfile() model used by netcdf Java, where each
dispatcher is asked if it can process the file. This decentralizes
the inference code. This will be done after all the major new
dispatchers (PIO, Zarr, etc) have been implemented.
2019-01-01 18:27:36 -07:00

494 lines
12 KiB
C

/*
Copyright (c) 1998-2018 University Corporation for Atmospheric Research/Unidata
See COPYRIGHT for license information.
*/
#include "config.h"
#ifdef HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifdef HAVE_STDARG_H
#include <stdarg.h>
#endif
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "netcdf.h"
#include "ncbytes.h"
#include "ncuri.h"
#include "ncrc.h"
#include "nclog.h"
#include "ncwinpath.h"
#define RCFILEENV "DAPRCFILE"
#define RTAG ']'
#define LTAG '['
#define TRIMCHARS " \t\r\n"
#undef MEMCHECK
#define MEMCHECK(x) if((x)==NULL) {goto nomem;} else {}
/* Forward */
static char* rcreadline(char** nextlinep);
static void rctrim(char* text);
static void rcorder(NClist* rc);
static int rccompile(const char* path);
static struct NCTriple* rclocate(const char* key, const char* hostport);
static int rcsearch(const char* prefix, const char* rcname, char** pathp);
static void rcfreetriples(NClist* rc);
#ifdef D4DEBUG
static void storedump(char* msg, NClist* triples);
#endif
/* Define default rc files and aliases, also defines search order*/
static char* rcfilenames[] = {".daprc",".dodsrc",NULL};
/**************************************************/
/* External Entry Points */
/* locate, read and compile the rc file, if any */
int
NC_rcload(void)
{
int ret = NC_NOERR;
char* path = NULL;
if(ncrc_globalstate.rcinfo.ignore) {
nclog(NCLOGDBG,"No runtime configuration file specified; continuing");
return (NC_NOERR);
}
if(ncrc_globalstate.rcinfo.loaded) return (NC_NOERR);
/* locate the configuration files in the following order:
1. specified by NC_set_rcfile
2. set by DAPRCFILE env variable
3. ./<rcfile> (current directory)
4. $HOME/<rcfile>
*/
if(ncrc_globalstate.rcinfo.rcfile != NULL) { /* always use this */
path = strdup(ncrc_globalstate.rcinfo.rcfile);
} else if(getenv(RCFILEENV) != NULL && strlen(getenv(RCFILEENV)) > 0) {
path = strdup(getenv(RCFILEENV));
} else {
char** rcname;
int found = 0;
for(rcname=rcfilenames;!found && *rcname;rcname++) {
ret = rcsearch(".",*rcname,&path);
if(ret == NC_NOERR && path == NULL) /* try $HOME */
ret = rcsearch(ncrc_globalstate.home,*rcname,&path);
if(ret != NC_NOERR)
goto done;
if(path != NULL)
found = 1;
}
}
if(path == NULL) {
nclog(NCLOGDBG,"Cannot find runtime configuration file; continuing");
} else {
#ifdef D4DEBUG
fprintf(stderr, "RC file: %s\n", path);
#endif
if((ret=rccompile(path))) {
nclog(NCLOGERR, "Error parsing %s\n",path);
goto done;
}
}
done:
ncrc_globalstate.rcinfo.loaded = 1; /* even if not exists */
nullfree(path);
return (ret);
}
/**
* Locate a triple by property key and host+port (may be null|"")
* If duplicate keys, first takes precedence.
*/
char*
NC_rclookup(const char* key, const char* hostport)
{
struct NCTriple* triple = rclocate(key,hostport);
return (triple == NULL ? NULL : triple->value);
}
/*!
Set the absolute path to use for the rc file.
WARNING: this MUST be called before any other
call in order for this to take effect.
\param[in] rcfile The path to use. If NULL, or "",
then do not use any rcfile.
\retval OC_NOERR if the request succeeded.
\retval OC_ERCFILE if the file failed to load
*/
int
NC_set_rcfile(const char* rcfile)
{
int stat = NC_NOERR;
FILE* f = NULL;
if(rcfile != NULL && strlen(rcfile) == 0)
rcfile = NULL;
f = NCfopen(rcfile,"r");
if(f == NULL) {
stat = NC_ERCFILE;
goto done;
}
fclose(f);
nullfree(ncrc_globalstate.rcinfo.rcfile);
ncrc_globalstate.rcinfo.rcfile = strdup(rcfile);
/* Clear ncrc_globalstate.rcinfo */
NC_rcclear(&ncrc_globalstate.rcinfo);
/* (re) load the rcfile and esp the triplestore*/
stat = NC_rcload();
done:
return stat;
}
void
NC_rcclear(NCRCinfo* info)
{
if(info == NULL) return;
nullfree(info->rcfile);
rcfreetriples(info->triples);
}
void
rcfreetriples(NClist* rc)
{
int i;
for(i=0;i<nclistlength(rc);i++) {
NCTriple* t = (NCTriple*)nclistget(rc,i);
nullfree(t->host);
nullfree(t->key);
nullfree(t->value);
free(t);
}
nclistfree(rc);
}
/**************************************************/
/* RC processing functions */
static char*
rcreadline(char** nextlinep)
{
char* line;
char* p;
line = (p = *nextlinep);
if(*p == '\0') return NULL; /*signal done*/
for(;*p;p++) {
if(*p == '\r' && p[1] == '\n') *p = '\0';
else if(*p == '\n') break;
}
*p++ = '\0'; /* null terminate line; overwrite newline */
*nextlinep = p;
return line;
}
/* Trim TRIMCHARS from both ends of text; */
static void
rctrim(char* text)
{
char* p = text;
size_t len = 0;
int i;
/* locate first non-trimchar */
for(;*p;p++) {
if(strchr(TRIMCHARS,*p) == NULL) break; /* hit non-trim char */
}
memmove(text,p,strlen(p)+1);
len = strlen(text);
/* locate last non-trimchar */
if(len > 0) {
for(i=(len-1);i>=0;i--) {
if(strchr(TRIMCHARS,text[i]) == NULL) {
text[i+1] = '\0'; /* elide trailing trimchars */
break;
}
}
}
}
/* Order the triples: those with urls must be first,
but otherwise relative order does not matter.
*/
static void
rcorder(NClist* rc)
{
int i;
int len = nclistlength(rc);
NClist* tmprc = NULL;
if(rc == NULL || len == 0) return;
tmprc = nclistnew();
/* Copy rc into tmprc and clear rc */
for(i=0;i<len;i++) {
NCTriple* ti = nclistget(rc,i);
nclistpush(tmprc,ti);
}
nclistclear(rc);
/* Two passes: 1) pull triples with host */
for(i=0;i<len;i++) {
NCTriple* ti = nclistget(tmprc,i);
if(ti->host == NULL) continue;
nclistpush(rc,ti);
}
/* pass 2 pull triples without host*/
for(i=0;i<len;i++) {
NCTriple* ti = nclistget(tmprc,i);
if(ti->host != NULL) continue;
nclistpush(rc,ti);
}
#ifdef D4DEBUG
storedump("reorder:",rc);
#endif
nclistfree(tmprc);
}
/* Create a triple store from a file */
static int
rccompile(const char* path)
{
int ret = NC_NOERR;
NClist* rc = NULL;
char* contents = NULL;
NCbytes* tmp = ncbytesnew();
NCURI* uri = NULL;
char* nextline = NULL;
if((ret=NC_readfile(path,tmp))) {
nclog(NCLOGERR, "Could not open configuration file: %s",path);
goto done;
}
contents = ncbytesextract(tmp);
if(contents == NULL) contents = strdup("");
/* Either reuse or create new */
rc = ncrc_globalstate.rcinfo.triples;
if(rc != NULL)
rcfreetriples(rc); /* clear out any old data */
else {
rc = nclistnew();
ncrc_globalstate.rcinfo.triples = rc;
}
nextline = contents;
for(;;) {
char* line;
char* key;
char* value;
size_t llen;
NCTriple* triple;
line = rcreadline(&nextline);
if(line == NULL) break; /* done */
rctrim(line); /* trim leading and trailing blanks */
if(line[0] == '#') continue; /* comment */
if((llen=strlen(line)) == 0) continue; /* empty line */
triple = (NCTriple*)calloc(1,sizeof(NCTriple));
if(triple == NULL) {ret = NC_ENOMEM; goto done;}
if(line[0] == LTAG) {
char* url = ++line;
char* rtag = strchr(line,RTAG);
if(rtag == NULL) {
nclog(NCLOGERR, "Malformed [url] in %s entry: %s",path,line);
free(triple);
continue;
}
line = rtag + 1;
*rtag = '\0';
/* compile the url and pull out the host */
if(uri) ncurifree(uri);
if(ncuriparse(url,&uri) != NCU_OK) {
nclog(NCLOGERR, "Malformed [url] in %s entry: %s",path,line);
free(triple);
continue;
}
ncbytesclear(tmp);
ncbytescat(tmp,uri->host);
if(uri->port != NULL) {
ncbytesappend(tmp,':');
ncbytescat(tmp,uri->port);
}
ncbytesnull(tmp);
triple->host = ncbytesextract(tmp);
if(strlen(triple->host)==0)
{free(triple->host); triple->host = NULL;}
}
/* split off key and value */
key=line;
value = strchr(line, '=');
if(value == NULL)
value = line + strlen(line);
else {
*value = '\0';
value++;
}
triple->key = strdup(key);
triple->value = strdup(value);
rctrim(triple->key);
rctrim(triple->value);
#ifdef D4DEBUG
fprintf(stderr,"rc: host=%s key=%s value=%s\n",
(triple->host != NULL ? triple->host : "<null>"),
triple->key,triple->valu);
#endif
nclistpush(rc,triple);
triple = NULL;
}
rcorder(rc);
done:
if(contents) free(contents);
ncurifree(uri);
ncbytesfree(tmp);
return (ret);
}
/**
* (Internal) Locate a triple by property key and host+port (may be null or "").
* If duplicate keys, first takes precedence.
*/
static struct NCTriple*
rclocate(const char* key, const char* hostport)
{
int i,found;
NClist* rc = ncrc_globalstate.rcinfo.triples;
NCTriple* triple = NULL;
if(ncrc_globalstate.rcinfo.ignore)
return NULL;
if(key == NULL || rc == NULL) return NULL;
if(hostport == NULL) hostport = "";
for(found=0,i=0;i<nclistlength(rc);i++) {
int t;
size_t hplen;
triple = (NCTriple*)nclistget(rc,i);
hplen = (triple->host == NULL ? 0 : strlen(triple->host));
if(strcmp(key,triple->key) != 0) continue; /* keys do not match */
/* If the triple entry has no url, then use it
(because we have checked all other cases)*/
if(hplen == 0) {found=1;break;}
/* do hostport match */
t = 0;
if(triple->host != NULL)
t = strcmp(hostport,triple->host);
if(t == 0) {found=1; break;}
}
return (found?triple:NULL);
}
/**
* Locate rc file by searching in directory prefix.
* Prefix must end in '/'
*/
static
int
rcsearch(const char* prefix, const char* rcname, char** pathp)
{
char* path = NULL;
FILE* f = NULL;
int plen = strlen(prefix);
int rclen = strlen(rcname);
int ret = NC_NOERR;
size_t pathlen = plen+rclen+1; /*+1 for '/' */
path = (char*)malloc(pathlen+1); /* +1 for nul*/
if(path == NULL) {ret = NC_ENOMEM; goto done;}
strncpy(path,prefix,pathlen);
strncat(path,"/",pathlen);
strncat(path,rcname,pathlen);
/* see if file is readable */
f = fopen(path,"r");
if(f != NULL)
nclog(NCLOGDBG, "Found rc file=%s",path);
done:
if(f == NULL || ret != NC_NOERR) {
nullfree(path);
path = NULL;
}
if(f != NULL)
fclose(f);
if(pathp != NULL)
*pathp = path;
else {
nullfree(path);
path = NULL;
}
return (ret);
}
int
NC_rcfile_insert(const char* key, const char* value, const char* hostport)
{
int ret = NC_NOERR;
/* See if this key already defined */
struct NCTriple* triple = NULL;
NClist* rc = ncrc_globalstate.rcinfo.triples;
if(rc == NULL) {
rc = nclistnew();
if(rc == NULL) {ret = NC_ENOMEM; goto done;}
}
triple = rclocate(key,hostport);
if(triple == NULL) {
triple = (NCTriple*)calloc(1,sizeof(NCTriple));
if(triple == NULL) {ret = NC_ENOMEM; goto done;}
triple->key = strdup(key);
triple->value = NULL;
rctrim(triple->key);
triple->host = (hostport == NULL ? NULL : strdup(hostport));
nclistpush(rc,triple);
}
if(triple->value != NULL) free(triple->value);
triple->value = strdup(value);
rctrim(triple->value);
done:
return ret;
}
/* Obtain the count of number of triples */
size_t
NC_rcfile_length(NCRCinfo* info)
{
return nclistlength(info->triples);
}
/* Obtain the ith triple; return NULL if out of range */
NCTriple*
NC_rcfile_ith(NCRCinfo* info, size_t i)
{
if(i >= nclistlength(info->triples))
return NULL;
return (NCTriple*)nclistget(info->triples,i);
}
#ifdef D4DEBUG
static void
storedump(char* msg, NClist* triples)
{
int i;
if(msg != NULL) fprintf(stderr,"%s\n",msg);
if(triples == NULL || nclistlength(triples)==0) {
fprintf(stderr,"<EMPTY>\n");
return;
}
for(i=0;i<nclistlength(triples);i++) {
NCTriple* t = (NCTriple*)nclistget(triples,i);
fprintf(stderr,"\t%s\t%s\t%s\n",
((t->host == NULL || strlen(t->host)==0)?"--":t->host),t->key,t->value);
}
fflush(stderr);
}
#endif