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42e8028726
https://github.com/Unidata/netcdf-c/issues/917 https://github.com/Unidata/netcdf-c/issues/915 Fix following memory errors: 1. global_buffer_overflow 2. nc4_att_list_add
967 lines
29 KiB
C
967 lines
29 KiB
C
/* Copyright 2003-2018, University Corporation for Atmospheric
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* Research. See COPYRIGHT file for copying and redistribution
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* conditions. */
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/**
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* @file
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*
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* @internal This file is part of netcdf-4, a netCDF-like interface
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* for HDF5, or a HDF5 backend for netCDF, depending on your point of
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* view.
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*
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* This file handles the nc4 attribute functions.
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*
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* Remember that with atts, type conversion can take place when
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* writing them, and when reading them.
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*
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* @author Ed Hartnett
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*/
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#include "nc.h"
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#include "nc4internal.h"
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#include "nc4dispatch.h"
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#include "ncdispatch.h"
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int nc4typelen(nc_type type);
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/**
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* @internal Get special informatation about the attribute.
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*
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* @param h5 Pointer to HDF5 file info struct.
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* @param name Name of attribute.
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* @param filetypep Pointer that gets type of the attribute data in
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* file.
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* @param mem_type Type of attribute data in memory.
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* @param lenp Pointer that gets length of attribute array.
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* @param attnump Pointer that gets the attribute number.
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* @param data Attribute data.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_EBADID Bad ncid.
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* @return ::NC_ERANGE Data conversion out of range.
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* @author Dennis Heimbigner
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*/
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static int
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nc4_get_att_special(NC_HDF5_FILE_INFO_T* h5, const char* name,
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nc_type* filetypep, nc_type mem_type, size_t* lenp,
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int* attnump, void* data)
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{
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/* Fail if asking for att id */
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if(attnump)
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return NC_EATTMETA;
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if(strcmp(name,NCPROPS)==0) {
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char* propdata = NULL;
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int stat = NC_NOERR;
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int len;
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if(h5->fileinfo->propattr.version == 0)
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return NC_ENOTATT;
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if(mem_type == NC_NAT) mem_type = NC_CHAR;
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if(mem_type != NC_CHAR)
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return NC_ECHAR;
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if(filetypep) *filetypep = NC_CHAR;
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stat = NC4_buildpropinfo(&h5->fileinfo->propattr, &propdata);
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if(stat != NC_NOERR) return stat;
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len = strlen(propdata);
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if(lenp) *lenp = len;
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if(data) strncpy((char*)data,propdata,len+1);
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free(propdata);
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} else if(strcmp(name,ISNETCDF4ATT)==0
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|| strcmp(name,SUPERBLOCKATT)==0) {
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unsigned long long iv = 0;
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if(filetypep) *filetypep = NC_INT;
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if(lenp) *lenp = 1;
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if(strcmp(name,SUPERBLOCKATT)==0)
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iv = (unsigned long long)h5->fileinfo->superblockversion;
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else /* strcmp(name,ISNETCDF4ATT)==0 */
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iv = NC4_isnetcdf4(h5);
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if(mem_type == NC_NAT) mem_type = NC_INT;
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if(data)
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switch (mem_type) {
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case NC_BYTE: *((char*)data) = (char)iv; break;
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case NC_SHORT: *((short*)data) = (short)iv; break;
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case NC_INT: *((int*)data) = (int)iv; break;
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case NC_UBYTE: *((unsigned char*)data) = (unsigned char)iv; break;
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case NC_USHORT: *((unsigned short*)data) = (unsigned short)iv; break;
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case NC_UINT: *((unsigned int*)data) = (unsigned int)iv; break;
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case NC_INT64: *((long long*)data) = (long long)iv; break;
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case NC_UINT64: *((unsigned long long*)data) = (unsigned long long)iv; break;
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default:
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return NC_ERANGE;
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}
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}
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return NC_NOERR;
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}
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/**
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* @internal Get or put attribute metadata from our linked list of
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* file info. Always locate the attribute by name, never by attnum.
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* The mem_type is ignored if data=NULL.
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*
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* @param ncid File and group ID.
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* @param varid Variable ID.
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* @param name Name of attribute.
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* @param xtype Pointer that gets (file) type of attribute.
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* @param mem_type The type of attribute data in memory.
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* @param lenp Pointer that gets length of attribute array.
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* @param attnum Pointer that gets the index number of this attribute.
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* @param data Pointer that gets attribute data.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_EBADID Bad ncid.
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* @author Ed Hartnett
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*/
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static int
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nc4_get_att(int ncid, int varid, const char *name, nc_type *xtype,
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nc_type mem_type, size_t *lenp, int *attnum, void *data)
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{
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NC *nc;
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NC_GRP_INFO_T *grp;
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NC_HDF5_FILE_INFO_T *h5;
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NC_ATT_INFO_T *att = NULL;
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int my_attnum = -1;
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int need_to_convert = 0;
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int range_error = NC_NOERR;
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void *bufr = NULL;
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size_t type_size;
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char norm_name[NC_MAX_NAME + 1];
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int i;
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int retval;
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if (attnum)
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my_attnum = *attnum;
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LOG((3, "%s: ncid 0x%x varid %d name %s attnum %d mem_type %d",
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__func__, ncid, varid, name, my_attnum, mem_type));
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/* Find info for this file, group, and h5 info. */
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if ((retval = nc4_find_nc_grp_h5(ncid, &nc, &grp, &h5)))
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return retval;
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/* Check varid */
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if (varid != NC_GLOBAL) {
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NC_VAR_INFO_T* var = (NC_VAR_INFO_T*)ncindexith(grp->vars,varid);
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if(var == NULL)
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return NC_ENOTVAR;
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assert(var->hdr.id == varid);
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}
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if (name == NULL)
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BAIL(NC_EBADNAME);
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/* Normalize name. */
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if ((retval = nc4_normalize_name(name, norm_name)))
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BAIL(retval);
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/* If this is one of the reserved atts, use nc_get_att_special. */
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if (nc->ext_ncid == ncid && varid == NC_GLOBAL) {
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const NC_reservedatt* ra = NC_findreserved(norm_name);
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if(ra != NULL && (ra->flags & NAMEONLYFLAG))
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return nc4_get_att_special(h5, norm_name, xtype, mem_type, lenp, attnum, data);
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}
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/* Find the attribute, if it exists. */
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if ((retval = nc4_find_grp_att(grp, varid, norm_name, my_attnum, &att)))
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return retval;
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/* If mem_type is NC_NAT, it means we want to use the attribute's
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* file type as the mem type as well. */
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if (mem_type == NC_NAT)
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mem_type = att->nc_typeid;
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/* If the attribute is NC_CHAR, and the mem_type isn't, or vice
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* versa, that's a freakish attempt to convert text to
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* numbers. Some pervert out there is trying to pull a fast one!
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* Send him an NC_ECHAR error. */
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if (data && att->len)
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if ((att->nc_typeid == NC_CHAR && mem_type != NC_CHAR) ||
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(att->nc_typeid != NC_CHAR && mem_type == NC_CHAR))
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BAIL(NC_ECHAR); /* take that, you freak! */
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/* Copy the info. */
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if (lenp)
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*lenp = att->len;
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if (xtype)
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*xtype = att->nc_typeid;
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if (attnum) {
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*attnum = att->hdr.id;
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}
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/* Zero len attributes are easy to read! */
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if (!att->len)
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BAIL(NC_NOERR);
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/* Later on, we will need to know the size of this type. */
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if ((retval = nc4_get_typelen_mem(h5, mem_type, &type_size)))
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BAIL(retval);
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/* We may have to convert data. Treat NC_CHAR the same as
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* NC_UBYTE. If the mem_type is NAT, don't try any conversion - use
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* the attribute's type. */
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if (data && att->len && mem_type != att->nc_typeid &&
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mem_type != NC_NAT &&
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!(mem_type == NC_CHAR &&
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(att->nc_typeid == NC_UBYTE || att->nc_typeid == NC_BYTE)))
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{
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if (!(bufr = malloc((size_t)(att->len * type_size))))
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BAIL(NC_ENOMEM);
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need_to_convert++;
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if ((retval = nc4_convert_type(att->data, bufr, att->nc_typeid,
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mem_type, (size_t)att->len, &range_error,
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NULL, (h5->cmode & NC_CLASSIC_MODEL), 0, 0)))
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BAIL(retval);
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/* For strict netcdf-3 rules, ignore erange errors between UBYTE
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* and BYTE types. */
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if ((h5->cmode & NC_CLASSIC_MODEL) &&
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(att->nc_typeid == NC_UBYTE || att->nc_typeid == NC_BYTE) &&
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(mem_type == NC_UBYTE || mem_type == NC_BYTE) &&
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range_error)
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range_error = 0;
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}
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else
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{
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bufr = att->data;
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}
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/* If the caller wants data, copy it for him. If he hasn't
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allocated enough memory for it, he will burn in segmentation
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fault hell, writhing with the agony of undiscovered memory
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bugs! */
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if (data)
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{
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if (att->vldata)
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{
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size_t base_typelen;
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hvl_t *vldest = data;
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NC_TYPE_INFO_T *type;
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/* Get the type object for the attribute's type */
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if ((retval = nc4_find_type(h5, att->nc_typeid, &type)))
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BAIL(retval);
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/* Retrieve the size of the base type */
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if ((retval = nc4_get_typelen_mem(h5, type->u.v.base_nc_typeid, &base_typelen)))
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BAIL(retval);
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for (i = 0; i < att->len; i++)
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{
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vldest[i].len = att->vldata[i].len;
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if (!(vldest[i].p = malloc(vldest[i].len * base_typelen)))
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BAIL(NC_ENOMEM);
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memcpy(vldest[i].p, att->vldata[i].p, vldest[i].len * base_typelen);
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}
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}
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else if (att->stdata)
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{
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for (i = 0; i < att->len; i++)
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{
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/* Check for NULL pointer for string (valid in HDF5) */
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if(att->stdata[i])
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{
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if (!(((char **)data)[i] = strdup(att->stdata[i])))
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BAIL(NC_ENOMEM);
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}
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else
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((char **)data)[i] = att->stdata[i];
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}
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}
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else
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{
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memcpy(data, bufr, (size_t)(att->len * type_size));
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}
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}
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exit:
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if (need_to_convert)
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free(bufr);
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if (range_error)
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retval = NC_ERANGE;
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return retval;
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}
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/**
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* @internal Learn about an att. All the nc4 nc_inq_ functions just
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* call nc4_get_att to get the metadata on an attribute.
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*
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* @param ncid File and group ID.
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* @param varid Variable ID.
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* @param name Name of attribute.
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* @param xtypep Pointer that gets type of attribute.
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* @param lenp Pointer that gets length of attribute data array.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_EBADID Bad ncid.
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* @author Ed Hartnett
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*/
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int
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NC4_inq_att(int ncid, int varid, const char *name, nc_type *xtypep,
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size_t *lenp)
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{
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LOG((2, "%s: ncid 0x%x varid %d name %s", __func__, ncid, varid, name));
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return nc4_get_att(ncid, varid, name, xtypep, NC_NAT, lenp, NULL, NULL);
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}
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/**
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* @internal Learn an attnum, given a name.
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*
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* @param ncid File and group ID.
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* @param varid Variable ID.
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* @param name Name of attribute.
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* @param attnump Pointer that gets the attribute index number.
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*
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* @return ::NC_NOERR No error.
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* @author Ed Hartnett
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*/
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int
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NC4_inq_attid(int ncid, int varid, const char *name, int *attnump)
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{
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LOG((2, "%s: ncid 0x%x varid %d name %s", __func__, ncid, varid, name));
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return nc4_get_att(ncid, varid, name, NULL, NC_NAT, NULL, attnump, NULL);
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}
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/**
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* @internal Given an attnum, find the att's name.
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*
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* @param ncid File and group ID.
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* @param varid Variable ID.
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* @param attnum The index number of the attribute.
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* @param name Pointer that gets name of attrribute.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_EBADID Bad ncid.
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* @author Ed Hartnett
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*/
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int
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NC4_inq_attname(int ncid, int varid, int attnum, char *name)
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{
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NC *nc;
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NC_ATT_INFO_T *att;
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NC_HDF5_FILE_INFO_T *h5;
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int retval = NC_NOERR;
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LOG((2, "nc_inq_attname: ncid 0x%x varid %d attnum %d",
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ncid, varid, attnum));
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/* Find metadata. */
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if (!(nc = nc4_find_nc_file(ncid,NULL)))
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return NC_EBADID;
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/* get netcdf-4 metadata */
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h5 = NC4_DATA(nc);
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assert(h5);
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/* Handle netcdf-4 files. */
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if ((retval = nc4_find_nc_att(ncid, varid, NULL, attnum, &att)))
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return retval;
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/* Get the name. */
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if (name)
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strcpy(name, att->hdr.name);
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return NC_NOERR;
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}
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/**
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* @internal Get the attribute list for either a varid or NC_GLOBAL
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*
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* @param grp Group
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* @param varid Variable ID | NC_BLOGAL
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* @param varp Pointer into which to return created NC_VAR_INFO_T instance
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*
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* @return Attribute list | NULL
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* @author Dennis Heimbigner
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*/
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static NCindex*
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getattlist(NC_GRP_INFO_T* grp, int varid, NC_VAR_INFO_T** varp)
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{
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if (varid == NC_GLOBAL) {
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if(varp) *varp = NULL;
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return grp->att;
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} else {
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NC_VAR_INFO_T* var = (NC_VAR_INFO_T*)ncindexith(grp->vars,varid);
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if (!var) return NULL;
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assert(var->hdr.id == varid);
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if(varp) *varp = var;
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return var->att;
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}
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}
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/**
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* @internal I think all atts should be named the exact same thing, to
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* avoid confusion!
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*
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* @param ncid File and group ID.
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* @param varid Variable ID.
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* @param name Name of attribute.
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* @param newname New name for attribute.
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*
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* @return ::NC_NOERR No error.
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* @return ::NC_EBADID Bad ncid.
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* @author Ed Hartnett
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*/
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int
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NC4_rename_att(int ncid, int varid, const char *name, const char *newname)
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{
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NC *nc;
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NC_GRP_INFO_T *grp;
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NC_HDF5_FILE_INFO_T *h5;
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NC_VAR_INFO_T *var = NULL;
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NC_ATT_INFO_T *att;
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NCindex *list;
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char norm_newname[NC_MAX_NAME + 1], norm_name[NC_MAX_NAME + 1];
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hid_t datasetid = 0;
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int retval = NC_NOERR;
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if (!name || !newname)
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return NC_EINVAL;
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LOG((2, "nc_rename_att: ncid 0x%x varid %d name %s newname %s",
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ncid, varid, name, newname));
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/* If the new name is too long, that's an error. */
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if (strlen(newname) > NC_MAX_NAME)
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return NC_EMAXNAME;
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/* Find info for this file, group, and h5 info. */
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if ((retval = nc4_find_nc_grp_h5(ncid, &nc, &grp, &h5)))
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return retval;
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assert(h5 && grp && h5);
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/* If the file is read-only, return an error. */
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if (h5->no_write)
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return NC_EPERM;
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/* Check and normalize the name. */
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if ((retval = nc4_check_name(newname, norm_newname)))
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return retval;
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/* Is new name in use? */
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list = getattlist(grp,varid,&var);
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if(list == NULL)
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return NC_ENOTVAR;
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att = (NC_ATT_INFO_T*)ncindexlookup(list,norm_newname);
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if(att != NULL)
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return NC_ENAMEINUSE;
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/* Normalize name and find the attribute. */
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if ((retval = nc4_normalize_name(name, norm_name)))
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return retval;
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att = (NC_ATT_INFO_T*)ncindexlookup(list,norm_name);
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if (!att)
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return NC_ENOTATT;
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/* If we're not in define mode, new name must be of equal or
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less size, if complying with strict NC3 rules. */
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if (!(h5->flags & NC_INDEF) && strlen(norm_newname) > strlen(att->hdr.name) &&
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(h5->cmode & NC_CLASSIC_MODEL))
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return NC_ENOTINDEFINE;
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/* Delete the original attribute, if it exists in the HDF5 file. */
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if (att->created)
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{
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if (varid == NC_GLOBAL)
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{
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if (H5Adelete(grp->hdf_grpid, att->hdr.name) < 0)
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return NC_EHDFERR;
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}
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else
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{
|
|
if ((retval = nc4_open_var_grp2(grp, varid, &datasetid)))
|
|
return retval;
|
|
if (H5Adelete(datasetid, att->hdr.name) < 0)
|
|
return NC_EHDFERR;
|
|
}
|
|
att->created = NC_FALSE;
|
|
}
|
|
|
|
/* Copy the new name into our metadata. */
|
|
if(att->hdr.name) free(att->hdr.name);
|
|
if (!(att->hdr.name = strdup(norm_newname)))
|
|
return NC_ENOMEM;
|
|
att->hdr.hashkey = NC_hashmapkey(att->hdr.name,strlen(att->hdr.name)); /* Fix hash key */
|
|
|
|
att->dirty = NC_TRUE;
|
|
|
|
/* Rehash the attribute list so that the new name is used */
|
|
if(!ncindexrebuild(list))
|
|
return NC_EINTERNAL;
|
|
|
|
/* Mark attributes on variable dirty, so they get written */
|
|
if(var)
|
|
var->attr_dirty = NC_TRUE;
|
|
|
|
return retval;
|
|
}
|
|
|
|
/**
|
|
* @internal Delete an att. Rub it out. Push the button on
|
|
* it. Liquidate it. Bump it off. Take it for a one-way
|
|
* ride. Terminate it.
|
|
*
|
|
* @param ncid File and group ID.
|
|
* @param varid Variable ID.
|
|
* @param name Name of attribute to delete.
|
|
*
|
|
* @return ::NC_NOERR No error.
|
|
* @return ::NC_EBADID Bad ncid.
|
|
* @author Ed Hartnett
|
|
*/
|
|
int
|
|
NC4_del_att(int ncid, int varid, const char *name)
|
|
{
|
|
NC *nc;
|
|
NC_GRP_INFO_T *grp;
|
|
NC_VAR_INFO_T *var;
|
|
NC_HDF5_FILE_INFO_T *h5;
|
|
NC_ATT_INFO_T *att;
|
|
NCindex* attlist = NULL;
|
|
hid_t locid = 0, datasetid = 0;
|
|
int retval = NC_NOERR;
|
|
int i;
|
|
size_t deletedid;
|
|
|
|
if (!name)
|
|
return NC_EINVAL;
|
|
|
|
LOG((2, "nc_del_att: ncid 0x%x varid %d name %s",
|
|
ncid, varid, name));
|
|
|
|
/* Find info for this file, group, and h5 info. */
|
|
if ((retval = nc4_find_nc_grp_h5(ncid, &nc, &grp, &h5)))
|
|
return retval;
|
|
|
|
assert(h5 && grp);
|
|
|
|
/* If the file is read-only, return an error. */
|
|
if (h5->no_write)
|
|
return NC_EPERM;
|
|
|
|
/* If it's not in define mode, forget it. */
|
|
if (!(h5->flags & NC_INDEF))
|
|
{
|
|
if (h5->cmode & NC_CLASSIC_MODEL)
|
|
return NC_ENOTINDEFINE;
|
|
if ((retval = NC4_redef(ncid)))
|
|
BAIL(retval);
|
|
}
|
|
|
|
/* Get either the global or a variable attribute list. Also figure
|
|
out the HDF5 location it's attached to. */
|
|
attlist = getattlist(grp,varid,&var);
|
|
if(attlist == NULL)
|
|
return NC_ENOTVAR;
|
|
if (varid == NC_GLOBAL)
|
|
locid = grp->hdf_grpid;
|
|
else if (var->created)
|
|
locid = var->hdf_datasetid;
|
|
|
|
/* Now find the attribute by name */
|
|
att = (NC_ATT_INFO_T*)ncindexlookup(attlist,name);
|
|
|
|
/* If att is NULL, we couldn't find the attribute. */
|
|
if (!att)
|
|
BAIL_QUIET(NC_ENOTATT);
|
|
|
|
/* Delete it from the HDF5 file, if it's been created. */
|
|
if (att->created)
|
|
{
|
|
assert(locid);
|
|
|
|
if(H5Adelete(locid, att->hdr.name) < 0)
|
|
BAIL(NC_EATTMETA);
|
|
}
|
|
|
|
|
|
deletedid = att->hdr.id;
|
|
|
|
/* Remove this attribute in this list */
|
|
if ((retval = nc4_att_list_del(attlist, att)))
|
|
BAIL(retval);
|
|
|
|
/* Renumber all attributes with higher indices. */
|
|
for(i=0;i<ncindexsize(attlist);i++) {
|
|
NC_ATT_INFO_T* a = (NC_ATT_INFO_T*)ncindexith(attlist,i);
|
|
if(a == NULL) continue;
|
|
if(a->hdr.id > deletedid) a->hdr.id--;
|
|
}
|
|
|
|
/* rebuild the index */
|
|
if(!ncindexrebuild(attlist))
|
|
BAIL(NC_EINTERNAL);
|
|
|
|
exit:
|
|
if (datasetid > 0) H5Dclose(datasetid);
|
|
return retval;
|
|
}
|
|
|
|
/**
|
|
* @internal Write an attribute to a netCDF-4/HDF5 file, converting
|
|
* data type if necessary.
|
|
*
|
|
* @param ncid File and group ID.
|
|
* @param varid Variable ID.
|
|
* @param name Name of attribute.
|
|
* @param file_type Type of the attribute data in file.
|
|
* @param len Number of elements in attribute array.
|
|
* @param data Attribute data.
|
|
* @param mem_type Type of data in memory.
|
|
*
|
|
* @return ::NC_NOERR No error.
|
|
* @return ::NC_EINVAL Invalid parameters.
|
|
* @return ::NC_EBADID Bad ncid.
|
|
* @return ::NC_ENOTVAR Variable not found.
|
|
* @return ::NC_EBADNAME Name contains illegal characters.
|
|
* @return ::NC_ENAMEINUSE Name already in use.
|
|
* @author Ed Hartnett, Dennis Heimbigner
|
|
*/
|
|
int
|
|
NC4_put_att(int ncid, int varid, const char *name, nc_type file_type,
|
|
size_t len, const void *data, nc_type mem_type)
|
|
{
|
|
NC *nc;
|
|
NC_GRP_INFO_T *grp;
|
|
NC_HDF5_FILE_INFO_T *h5;
|
|
NC_VAR_INFO_T *var = NULL;
|
|
NCindex* attlist = NULL;
|
|
NC_ATT_INFO_T* att;
|
|
char norm_name[NC_MAX_NAME + 1];
|
|
nc_bool_t new_att = NC_FALSE;
|
|
int retval = NC_NOERR, range_error = 0;
|
|
size_t type_size;
|
|
int i;
|
|
int ret;
|
|
|
|
/* Find info for this file, group, and h5 info. */
|
|
if ((ret = nc4_find_nc_grp_h5(ncid, &nc, &grp, &h5)))
|
|
return ret;
|
|
assert(nc && grp && h5);
|
|
|
|
/* Find att, if it exists. (Must check varid first or nc_test will
|
|
* break.) */
|
|
attlist = getattlist(grp,varid,&var);
|
|
if(attlist == NULL)
|
|
return NC_ENOTVAR;
|
|
|
|
/* The length needs to be positive (cast needed for braindead
|
|
systems with signed size_t). */
|
|
if((unsigned long) len > X_INT_MAX)
|
|
return NC_EINVAL;
|
|
|
|
/* Check name before LOG statement. */
|
|
if (!name || strlen(name) > NC_MAX_NAME)
|
|
return NC_EBADNAME;
|
|
|
|
LOG((1, "%s: ncid 0x%x varid %d name %s file_type %d mem_type %d len %d",
|
|
__func__, ncid, varid, name, file_type, mem_type, len));
|
|
|
|
/* If len is not zero, then there must be some data. */
|
|
if (len && !data)
|
|
return NC_EINVAL;
|
|
|
|
/* If the file is read-only, return an error. */
|
|
if (h5->no_write)
|
|
return NC_EPERM;
|
|
|
|
/* Check and normalize the name. */
|
|
if ((retval = nc4_check_name(name, norm_name)))
|
|
return retval;
|
|
|
|
/* Check that a reserved att name is not being used improperly */
|
|
const NC_reservedatt* ra = NC_findreserved(name);
|
|
if(ra != NULL) {
|
|
/* case 1: grp=root, varid==NC_GLOBAL, flags & READONLYFLAG */
|
|
if (nc->ext_ncid == ncid && varid == NC_GLOBAL && grp->parent == NULL
|
|
&& (ra->flags & READONLYFLAG))
|
|
return NC_ENAMEINUSE;
|
|
/* case 2: grp=NA, varid!=NC_GLOBAL, flags & DIMSCALEFLAG */
|
|
if (varid != NC_GLOBAL && (ra->flags & DIMSCALEFLAG))
|
|
return NC_ENAMEINUSE;
|
|
}
|
|
|
|
/* See if there is already an attribute with this name. */
|
|
att = (NC_ATT_INFO_T*)ncindexlookup(attlist,norm_name);
|
|
|
|
LOG((1, "%s: ncid 0x%x varid %d name %s file_type %d mem_type %d len %d",
|
|
__func__, ncid, varid, name, file_type, mem_type, len));
|
|
|
|
if (!att)
|
|
{
|
|
/* If this is a new att, require define mode. */
|
|
if (!(h5->flags & NC_INDEF))
|
|
{
|
|
if (h5->cmode & NC_CLASSIC_MODEL)
|
|
return NC_EINDEFINE;
|
|
if ((retval = NC4_redef(ncid)))
|
|
BAIL(retval);
|
|
}
|
|
new_att = NC_TRUE;
|
|
}
|
|
else
|
|
{
|
|
/* For an existing att, if we're not in define mode, the len
|
|
must not be greater than the existing len for classic model. */
|
|
if (!(h5->flags & NC_INDEF) &&
|
|
len * nc4typelen(file_type) > (size_t)att->len * nc4typelen(att->nc_typeid))
|
|
{
|
|
if (h5->cmode & NC_CLASSIC_MODEL)
|
|
return NC_EINDEFINE;
|
|
if ((retval = NC4_redef(ncid)))
|
|
BAIL(retval);
|
|
}
|
|
}
|
|
|
|
/* We must have two valid types to continue. */
|
|
if (file_type == NC_NAT || mem_type == NC_NAT)
|
|
return NC_EBADTYPE;
|
|
|
|
/* Get information about this type. */
|
|
if ((retval = nc4_get_typelen_mem(h5, file_type, &type_size)))
|
|
return retval;
|
|
|
|
/* No character conversions are allowed. */
|
|
if (file_type != mem_type &&
|
|
(file_type == NC_CHAR || mem_type == NC_CHAR ||
|
|
file_type == NC_STRING || mem_type == NC_STRING))
|
|
return NC_ECHAR;
|
|
|
|
/* For classic mode file, only allow atts with classic types to be
|
|
* created. */
|
|
if (h5->cmode & NC_CLASSIC_MODEL && file_type > NC_DOUBLE)
|
|
return NC_ESTRICTNC3;
|
|
|
|
/* Add to the end of the attribute list, if this att doesn't
|
|
already exist. */
|
|
if (new_att)
|
|
{
|
|
LOG((3, "adding attribute %s to the list...", norm_name));
|
|
if ((ret = nc4_att_list_add(attlist, norm_name, &att)))
|
|
BAIL (ret);
|
|
}
|
|
|
|
/* Now fill in the metadata. */
|
|
att->dirty = NC_TRUE;
|
|
att->nc_typeid = file_type;
|
|
|
|
/* If this att has vlen or string data, release it before we lose the length value. */
|
|
if (att->stdata)
|
|
{
|
|
for (i = 0; i < att->len; i++)
|
|
if(att->stdata[i])
|
|
free(att->stdata[i]);
|
|
free(att->stdata);
|
|
att->stdata = NULL;
|
|
}
|
|
if (att->vldata)
|
|
{
|
|
for (i = 0; i < att->len; i++)
|
|
nc_free_vlen(&att->vldata[i]);
|
|
free(att->vldata);
|
|
att->vldata = NULL;
|
|
}
|
|
|
|
att->len = len;
|
|
|
|
/* If this is the _FillValue attribute, then we will also have to
|
|
* copy the value to the fill_vlue pointer of the NC_VAR_INFO_T
|
|
* struct for this var. (But ignore a global _FillValue
|
|
* attribute). */
|
|
if (!strcmp(att->hdr.name, _FillValue) && varid != NC_GLOBAL)
|
|
{
|
|
int size;
|
|
|
|
/* Fill value must be same type and have exactly one value */
|
|
if (att->nc_typeid != var->type_info->hdr.id)
|
|
return NC_EBADTYPE;
|
|
if (att->len != 1)
|
|
return NC_EINVAL;
|
|
|
|
/* If we already wrote to the dataset, then return an error. */
|
|
if (var->written_to)
|
|
return NC_ELATEFILL;
|
|
|
|
/* Get the length of the veriable data type. */
|
|
if ((retval = nc4_get_typelen_mem(grp->nc4_info, var->type_info->hdr.id,
|
|
&type_size)))
|
|
return retval;
|
|
|
|
/* Already set a fill value? Now I'll have to free the old
|
|
* one. Make up your damn mind, would you? */
|
|
if (var->fill_value)
|
|
{
|
|
if (var->type_info->nc_type_class == NC_VLEN)
|
|
{
|
|
if ((retval = nc_free_vlen(var->fill_value)))
|
|
return retval;
|
|
}
|
|
else if (var->type_info->nc_type_class == NC_STRING)
|
|
{
|
|
if (*(char **)var->fill_value)
|
|
free(*(char **)var->fill_value);
|
|
}
|
|
free(var->fill_value);
|
|
}
|
|
|
|
/* Determine the size of the fill value in bytes. */
|
|
if (var->type_info->nc_type_class == NC_VLEN)
|
|
size = sizeof(hvl_t);
|
|
else if (var->type_info->nc_type_class == NC_STRING)
|
|
size = sizeof(char *);
|
|
else
|
|
size = type_size;
|
|
|
|
/* Allocate space for the fill value. */
|
|
if (!(var->fill_value = calloc(1, size)))
|
|
return NC_ENOMEM;
|
|
|
|
/* Copy the fill_value. */
|
|
LOG((4, "Copying fill value into metadata for variable %s", var->hdr.name));
|
|
if (var->type_info->nc_type_class == NC_VLEN)
|
|
{
|
|
nc_vlen_t *in_vlen = (nc_vlen_t *)data, *fv_vlen = (nc_vlen_t *)(var->fill_value);
|
|
|
|
fv_vlen->len = in_vlen->len;
|
|
if (!(fv_vlen->p = malloc(size * in_vlen->len)))
|
|
return NC_ENOMEM;
|
|
memcpy(fv_vlen->p, in_vlen->p, in_vlen->len * size);
|
|
}
|
|
else if (var->type_info->nc_type_class == NC_STRING)
|
|
{
|
|
if (*(char **)data)
|
|
{
|
|
if (!(*(char **)(var->fill_value) = malloc(strlen(*(char **)data) + 1)))
|
|
return NC_ENOMEM;
|
|
strcpy(*(char **)var->fill_value, *(char **)data);
|
|
}
|
|
else
|
|
*(char **)var->fill_value = NULL;
|
|
}
|
|
else
|
|
memcpy(var->fill_value, data, type_size);
|
|
|
|
/* Indicate that the fill value was changed, if the variable has already
|
|
* been created in the file, so the dataset gets deleted and re-created. */
|
|
if (var->created)
|
|
var->fill_val_changed = NC_TRUE;
|
|
}
|
|
|
|
/* Copy the attribute data, if there is any. VLENs and string
|
|
* arrays have to be handled specially. */
|
|
if (att->len)
|
|
{
|
|
nc_type type_class; /* Class of attribute's type */
|
|
|
|
/* Get class for this type. */
|
|
if ((retval = nc4_get_typeclass(h5, file_type, &type_class)))
|
|
return retval;
|
|
|
|
assert(data);
|
|
if (type_class == NC_VLEN)
|
|
{
|
|
const hvl_t *vldata1;
|
|
NC_TYPE_INFO_T *type;
|
|
size_t base_typelen;
|
|
|
|
/* Get the type object for the attribute's type */
|
|
if ((retval = nc4_find_type(h5, file_type, &type)))
|
|
BAIL(retval);
|
|
|
|
/* Retrieve the size of the base type */
|
|
if ((retval = nc4_get_typelen_mem(h5, type->u.v.base_nc_typeid, &base_typelen)))
|
|
BAIL(retval);
|
|
|
|
vldata1 = data;
|
|
if (!(att->vldata = (nc_vlen_t*)malloc(att->len * sizeof(hvl_t))))
|
|
BAIL(NC_ENOMEM);
|
|
for (i = 0; i < att->len; i++)
|
|
{
|
|
att->vldata[i].len = vldata1[i].len;
|
|
if (!(att->vldata[i].p = malloc(base_typelen * att->vldata[i].len)))
|
|
BAIL(NC_ENOMEM);
|
|
memcpy(att->vldata[i].p, vldata1[i].p, base_typelen * att->vldata[i].len);
|
|
}
|
|
}
|
|
else if (type_class == NC_STRING)
|
|
{
|
|
LOG((4, "copying array of NC_STRING"));
|
|
if (!(att->stdata = malloc(sizeof(char *) * att->len))) {
|
|
BAIL(NC_ENOMEM);
|
|
}
|
|
|
|
/* If we are overwriting an existing attribute,
|
|
specifically an NC_CHAR, we need to clean up
|
|
the pre-existing att->data. */
|
|
if (!new_att && att->data) {
|
|
free(att->data);
|
|
att->data = NULL;
|
|
}
|
|
|
|
for (i = 0; i < att->len; i++)
|
|
{
|
|
if(NULL != ((char **)data)[i]) {
|
|
LOG((5, "copying string %d of size %d", i, strlen(((char **)data)[i]) + 1));
|
|
if (!(att->stdata[i] = strdup(((char **)data)[i])))
|
|
BAIL(NC_ENOMEM);
|
|
}
|
|
else
|
|
att->stdata[i] = ((char **)data)[i];
|
|
}
|
|
}
|
|
else
|
|
{
|
|
/* [Re]allocate memory for the attribute data */
|
|
if (!new_att)
|
|
free (att->data);
|
|
if (!(att->data = malloc(att->len * type_size)))
|
|
BAIL(NC_ENOMEM);
|
|
|
|
/* Just copy the data, for non-atomic types */
|
|
if (type_class == NC_OPAQUE || type_class == NC_COMPOUND || type_class == NC_ENUM)
|
|
memcpy(att->data, data, len * type_size);
|
|
else
|
|
{
|
|
/* Data types are like religions, in that one can convert. */
|
|
if ((retval = nc4_convert_type(data, att->data, mem_type, file_type,
|
|
len, &range_error, NULL,
|
|
(h5->cmode & NC_CLASSIC_MODEL), 0, 0)))
|
|
BAIL(retval);
|
|
}
|
|
}
|
|
}
|
|
att->dirty = NC_TRUE;
|
|
att->created = NC_FALSE;
|
|
|
|
/* Mark attributes on variable dirty, so they get written */
|
|
if(var)
|
|
var->attr_dirty = NC_TRUE;
|
|
|
|
exit:
|
|
/* If there was an error return it, otherwise return any potential
|
|
range error value. If none, return NC_NOERR as usual.*/
|
|
if (retval)
|
|
return retval;
|
|
if (range_error)
|
|
return NC_ERANGE;
|
|
return NC_NOERR;
|
|
}
|
|
|
|
/**
|
|
* @internal Get an attribute.
|
|
*
|
|
* @param ncid File and group ID.
|
|
* @param varid Variable ID.
|
|
* @param name Name of attribute.
|
|
* @param value Pointer that gets attribute data.
|
|
* @param memtype The type the data should be converted to as it is read.
|
|
*
|
|
* @return ::NC_NOERR No error.
|
|
* @return ::NC_EBADID Bad ncid.
|
|
* @author Ed Hartnett
|
|
*/
|
|
int
|
|
NC4_get_att(int ncid, int varid, const char *name, void *value, nc_type memtype)
|
|
{
|
|
return nc4_get_att(ncid, varid, name, NULL, memtype, NULL, NULL, value);
|
|
}
|