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9094d25409
re: PR https://github.com/Unidata/netcdf-c/pull/2734 re: Issue https://github.com/Unidata/netcdf-c/issues/2733 As a result of an investigation by https://github.com/uweschulzweida, I discovered a significant bug in the NCZarr cache management. This PR extends the above PR to fix that bug. ## Change Overview * Insert extra checks for cache overflow. * Added test cases contingent on the --enable-large-file-tests option. * The Columbia server is down, so it has been temporarily disabled.
100 lines
2.5 KiB
C
100 lines
2.5 KiB
C
#include <stdlib.h>
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#include <stdio.h>
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#include <unistd.h>
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#include <sys/resource.h>
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#if defined(__APPLE__) && defined(__MACH__)
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#include <mach/mach.h>
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#endif
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#include "netcdf.h"
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#define filename "file://tmp_cachetest.zarr#mode=zarr,file"
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#define chunkSize ((size_t)(1<<17)) /* 128k */
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#define numCells ((size_t)(50 * chunkSize))
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#define numSteps ((size_t)360)
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static float var[numCells];
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size_t getPeakRSS(void)
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{
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struct rusage rusage;
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getrusage( RUSAGE_SELF, &rusage );
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#if defined(__APPLE__) && defined(__MACH__)
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return (size_t)rusage.ru_maxrss;
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#else
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return (size_t)(rusage.ru_maxrss * 1024L);
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#endif
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}
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static void
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nce(int istat)
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{
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if (istat != NC_NOERR)
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{
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fprintf(stderr, "%s\n", nc_strerror(istat));
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exit(-1);
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}
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}
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int
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main(void)
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{
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printf("write: chunkSize=%zu, numCells=%zu, numSteps=%zu, filename=%s\n", chunkSize, numCells, numSteps, filename);
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int ncId;
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nce(nc_create(filename, NC_CLOBBER | NC_NETCDF4, &ncId));
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int oldfill;
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nce(nc_set_fill(ncId, NC_NOFILL, &oldfill));
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int dims[2];
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nce(nc_def_dim(ncId, "time", numSteps, &dims[0]));
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nce(nc_def_dim(ncId, "cells", numCells, &dims[1]));
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int varId;
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nce(nc_def_var(ncId, "var", NC_FLOAT, 2, dims, &varId));
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size_t chunks[2] = {1, chunkSize};
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nc_def_var_chunking(ncId, varId, NC_CHUNKED, chunks);
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int shuffle = 0, deflate = 1, level = 3;
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nce(nc_def_var_deflate(ncId, varId, shuffle, deflate, level));
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size_t size, nelems;
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float preemption;
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nce(nc_get_var_chunk_cache(ncId, varId, &size, &nelems, &preemption));
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printf("default chunk cache: size=%zu, nelems=%zu, preemption=%g\n", size, nelems, preemption);
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size = 4 * numCells; // one float field at one time step
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nelems = 1000;
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preemption = 0.5;
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nce(nc_set_var_chunk_cache(ncId, varId, size, nelems, preemption));
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printf("set chunk cache: size=%zu, nelems=%zu, preemption=%g\n", size, nelems, preemption);
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nce(nc_enddef(ncId));
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{
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for (size_t i = 0; i < numCells; ++i) var[i] = 0.0f;
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for (size_t i = 0; i < numSteps; ++i)
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{
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size_t start[2], count[2];
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start[0] = i; start[1] = 0;
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count[0] = 1; count[1] = numCells;
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nce(nc_put_vara_float(ncId, varId, start, count, var));
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}
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}
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nce(nc_close(ncId));
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{
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size_t mbused = getPeakRSS() / (1024 * 1024);
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printf("Max mem: %zu MB\n", mbused);
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if(mbused > 100) {
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printf("*** Failed: used: %luMB expected: < 100MB\n",mbused);
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return (1);
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} else {
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printf("*** Passed: used: %luMB (< 100MB)\n",mbused);
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return 0;
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}
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}
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}
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