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b0b6c77a3e
to indicate that they only work for atomic types, not user defined types. 2. modified NCDEFAULT_{get/put}_vars to no longer use nc_get/put_varm. They now directly use nc_get/put_vara directly. This means that nc_get/put_vars now work properly for user defined types as well as atomic types. 3. Added test cases for get_vars/put_vars with a user defined type. Tests placed into nc_test/tst_compounds.c
1606 lines
44 KiB
C
1606 lines
44 KiB
C
/*! \file
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Functions for getting data from variables.
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Copyright 2011 University Corporation for Atmospheric
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Research/Unidata. See \ref COPYRIGHT file for more info. */
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#include "ncdispatch.h"
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#undef VARS_USES_VARM
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#ifndef VARS_USES_VARM
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struct GETodometer {
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int rank;
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size_t index[NC_MAX_VAR_DIMS];
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size_t start[NC_MAX_VAR_DIMS];
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size_t edges[NC_MAX_VAR_DIMS];
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ptrdiff_t stride[NC_MAX_VAR_DIMS];
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size_t stop[NC_MAX_VAR_DIMS];
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};
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static void
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odom_init(struct GETodometer* odom,
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size_t rank,
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const size_t* start, const size_t* edges, const ptrdiff_t* stride)
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{
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int i;
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memset(odom,0,sizeof(struct GETodometer));
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odom->rank = rank;
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assert(odom->rank <= NC_MAX_VAR_DIMS);
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for(i=0;i<odom->rank;i++) {
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odom->start[i] = (start != NULL ? start[i] : 0);
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odom->edges[i] = (edges != NULL ? edges[i] : 1);
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odom->stride[i] = (stride != NULL ? stride[i] : 1);
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odom->stop[i] = odom->start[i] + (odom->edges[i]*odom->stride[i]);
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odom->index[i] = odom->start[i];
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}
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}
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static int
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odom_more(struct GETodometer* odom)
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{
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return (odom->index[0] < odom->stop[0]);
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}
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static int
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odom_next(struct GETodometer* odom)
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{
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int i;
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if(odom->rank == 0) return 0;
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for(i=odom->rank-1;i>=0;i--) {
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odom->index[i] += odom->stride[i];
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if(odom->index[i] < odom->stop[i]) break;
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if(i == 0) return 0; /* leave the 0th entry if it overflows*/
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odom->index[i] = odom->start[i]; /* reset this position*/
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}
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return 1;
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}
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#endif
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/** \internal
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\ingroup variables
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*/
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int
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NC_get_vara(int ncid, int varid,
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const size_t *start, const size_t *edges,
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void *value, nc_type memtype)
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{
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NC* ncp;
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int stat = NC_check_id(ncid, &ncp);
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if(stat != NC_NOERR) return stat;
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#ifdef USE_NETCDF4
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if(memtype >= NC_FIRSTUSERTYPEID) memtype = NC_NAT;
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#endif
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if(edges == NULL) {
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size_t shape[NC_MAX_VAR_DIMS];
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int ndims;
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stat = nc_inq_varndims(ncid, varid, &ndims);
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if(stat != NC_NOERR) return stat;
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stat = NC_getshape(ncid,varid,ndims,shape);
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if(stat != NC_NOERR) return stat;
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return ncp->dispatch->get_vara(ncid,varid,start,shape,value,memtype);
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} else
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return ncp->dispatch->get_vara(ncid,varid,start,edges,value,memtype);
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}
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/** \ingroup variables
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\internal
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*/
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static int
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NC_get_var(int ncid, int varid, void *value, nc_type memtype)
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{
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int ndims;
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size_t shape[NC_MAX_VAR_DIMS];
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int stat = nc_inq_varndims(ncid,varid, &ndims);
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if(stat) return stat;
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stat = NC_getshape(ncid,varid, ndims, shape);
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if(stat) return stat;
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return NC_get_vara(ncid, varid, NC_coord_zero, shape, value, memtype);
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}
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/** \internal
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\ingroup variables
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Most dispatch tables will use the default procedures
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*/
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int
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NCDEFAULT_get_vars(int ncid, int varid, const size_t * start,
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const size_t * edges, const ptrdiff_t * stride,
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void *value0, nc_type memtype)
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{
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#ifdef VARS_USES_VARM
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NC* ncp;
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int stat = NC_check_id(ncid, &ncp);
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if(stat != NC_NOERR) return stat;
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return ncp->dispatch->get_varm(ncid,varid,start,edges,stride,NULL,value0,memtype);
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#else
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/* Rebuilt get_vars code to simplify and avoid use of get_varm */
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int status = NC_NOERR;
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int i,simplestride,rank,isrecvar;
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struct GETodometer odom;
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nc_type vartype = NC_NAT;
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NC* ncp;
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size_t vartypelen, memtypelen;
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char* value = (char*)value0;
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size_t numrecs;
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size_t varshape[NC_MAX_VAR_DIMS];
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size_t mystart[NC_MAX_VAR_DIMS];
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size_t myedges[NC_MAX_VAR_DIMS];
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ptrdiff_t mystride[NC_MAX_VAR_DIMS];
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status = NC_check_id (ncid, &ncp);
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if(status != NC_NOERR) return status;
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status = nc_inq_vartype(ncid, varid, &vartype);
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if(status != NC_NOERR) return status;
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if(memtype == NC_NAT) memtype = vartype;
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/* compute the variable type size */
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status = nc_inq_type(ncid,vartype,NULL,&vartypelen);
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if(status != NC_NOERR) return status;
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if(memtype > NC_MAX_ATOMIC_TYPE)
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memtypelen = vartypelen;
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else
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memtypelen = nctypelen(memtype);
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/* Check gross internal/external type compatibility */
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if(vartype != memtype) {
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/* If !atomic, the two types must be the same */
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if(vartype > NC_MAX_ATOMIC_TYPE
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|| memtype > NC_MAX_ATOMIC_TYPE)
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return NC_EBADTYPE;
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/* ok, the types differ but both are atomic */
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if(memtype == NC_CHAR || vartype == NC_CHAR)
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return NC_ECHAR;
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}
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/* Get the variable rank */
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status = nc_inq_varndims(ncid, varid, &rank);
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if(status != NC_NOERR) return status;
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/* Get variable dimension sizes */
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isrecvar = NC_is_recvar(ncid,varid,&numrecs);
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NC_getshape(ncid,varid,rank,varshape);
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/* Optimize out using various checks */
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if (rank == 0) {
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/*
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* The variable is a scalar; consequently,
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* there s only one thing to get and only one place to put it.
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* (Why was I called?)
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*/
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size_t edge1[1] = {1};
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return NC_get_vara(ncid, varid, start, edge1, value, memtype);
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}
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/* Do various checks and fixups on start/edges/stride */
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simplestride = 1; /* assume so */
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for(i=0;i<rank;i++) {
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size_t dimlen;
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mystart[i] = (start == NULL ? 0 : start[i]);
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if(edges == NULL) {
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if(i == 0 && isrecvar)
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myedges[i] = numrecs - start[i];
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else
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myedges[i] = varshape[i] - mystart[i];
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} else
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myedges[i] = edges[i];
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if(myedges[i] == 0)
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return NC_NOERR; /* cannot read anything */
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mystride[i] = (stride == NULL ? 1 : stride[i]);
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if(mystride[i] <= 0
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/* cast needed for braindead systems with signed size_t */
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|| ((unsigned long) mystride[i] >= X_INT_MAX))
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return NC_ESTRIDE;
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if(mystride[i] != 1) simplestride = 0;
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/* illegal value checks */
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dimlen = (i == 0 && isrecvar ? numrecs : varshape[i]);
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if(mystart < 0 || mystart[i] >= dimlen)
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return NC_EINVALCOORDS;
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if(myedges[i] < 0 || (mystart[i] + myedges[i] > dimlen))
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return NC_EEDGE;
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}
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if(simplestride) {
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return NC_get_vara(ncid, varid, mystart, myedges, value, memtype);
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}
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/* Initial version uses and odometer to walk the variable
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and read each value one at a time. This can later be optimized
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to read larger chunks at a time.
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*/
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/* memptr indicates where to store the next value */
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char* memptr = value;
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odom_init(&odom,rank,mystart,myedges,mystride);
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/* walk the odometer to extract values */
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while(odom_more(&odom)) {
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int localstatus = NC_NOERR;
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/* Read a single value */
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localstatus = NC_get_vara(ncid,varid,odom.index,nc_sizevector1,memptr,memtype);
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/* So it turns out that when get_varm is used, all errors are
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delayed and ERANGE will be overwritten by more serious errors.
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*/
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if(localstatus != NC_NOERR) {
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if(status == NC_NOERR || localstatus != NC_ERANGE)
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status = localstatus;
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}
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memptr += memtypelen;
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odom_next(&odom);
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}
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return status;
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#endif
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}
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/** \internal
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\ingroup variables
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*/
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static int
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NC_get_var1(int ncid, int varid, const size_t *coord, void* value,
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nc_type memtype)
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{
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return NC_get_vara(ncid, varid, coord, NC_coord_one, value, memtype);
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}
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/** \internal
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\ingroup variables
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*/
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int
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NCDEFAULT_get_varm(int ncid, int varid, const size_t *start,
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const size_t *edges, const ptrdiff_t *stride,
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const ptrdiff_t *imapp, void *value0, nc_type memtype)
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{
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int status = NC_NOERR;
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nc_type vartype = NC_NAT;
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int varndims,maxidim;
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NC* ncp;
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size_t memtypelen;
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ptrdiff_t cvtmap[NC_MAX_VAR_DIMS];
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char* value = (char*)value0;
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status = NC_check_id (ncid, &ncp);
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if(status != NC_NOERR) return status;
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/*
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if(NC_indef(ncp)) return NC_EINDEFINE;
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*/
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status = nc_inq_vartype(ncid, varid, &vartype);
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if(status != NC_NOERR) return status;
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/* Check that this is an atomic type */
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if(vartype > NC_MAX_ATOMIC_TYPE)
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return NC_EMAPTYPE;
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status = nc_inq_varndims(ncid, varid, &varndims);
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if(status != NC_NOERR) return status;
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if(memtype == NC_NAT) {
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if(imapp != NULL && varndims != 0) {
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/*
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* convert map units from bytes to units of sizeof(type)
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*/
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size_t ii;
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const ptrdiff_t szof = (ptrdiff_t) nctypelen(vartype);
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for(ii = 0; ii < varndims; ii++) {
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if(imapp[ii] % szof != 0) {
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/*free(cvtmap);*/
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return NC_EINVAL;
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}
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cvtmap[ii] = imapp[ii] / szof;
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}
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imapp = cvtmap;
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}
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memtype = vartype;
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}
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if(memtype == NC_CHAR && vartype != NC_CHAR)
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return NC_ECHAR;
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else if(memtype != NC_CHAR && vartype == NC_CHAR)
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return NC_ECHAR;
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memtypelen = nctypelen(memtype);
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maxidim = (int) varndims - 1;
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if (maxidim < 0)
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{
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/*
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* The variable is a scalar; consequently,
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* there s only one thing to get and only one place to put it.
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* (Why was I called?)
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*/
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size_t edge1[1] = {1};
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return NC_get_vara(ncid, varid, start, edge1, value, memtype);
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}
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/*
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* else
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* The variable is an array.
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*/
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{
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int idim;
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size_t *mystart = NULL;
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size_t *myedges;
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size_t *iocount; /* count vector */
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size_t *stop; /* stop indexes */
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size_t *length; /* edge lengths in bytes */
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ptrdiff_t *mystride;
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ptrdiff_t *mymap;
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size_t varshape[NC_MAX_VAR_DIMS];
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int isrecvar;
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size_t numrecs;
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/* Compute some dimension related values */
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isrecvar = NC_is_recvar(ncid,varid,&numrecs);
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NC_getshape(ncid,varid,varndims,varshape);
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/*
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* Verify stride argument; also see if stride is all ones
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*/
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if(stride != NULL) {
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int stride1 = 1;
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for (idim = 0; idim <= maxidim; ++idim)
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{
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if (stride[idim] == 0
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/* cast needed for braindead systems with signed size_t */
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|| ((unsigned long) stride[idim] >= X_INT_MAX))
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{
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return NC_ESTRIDE;
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}
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if(stride[idim] != 1) stride1 = 0;
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}
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/* If stride1 is true, and there is no imap
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then call get_vara directly.
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*/
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if(stride1 && imapp == NULL) {
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return NC_get_vara(ncid, varid, start, edges, value, memtype);
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}
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}
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/* assert(sizeof(ptrdiff_t) >= sizeof(size_t)); */
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/* Allocate space for mystart,mystride,mymap etc.all at once */
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mystart = (size_t *)calloc(varndims * 7, sizeof(ptrdiff_t));
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if(mystart == NULL) return NC_ENOMEM;
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myedges = mystart + varndims;
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iocount = myedges + varndims;
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stop = iocount + varndims;
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length = stop + varndims;
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mystride = (ptrdiff_t *)(length + varndims);
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mymap = mystride + varndims;
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/*
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* Initialize I/O parameters.
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*/
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for (idim = maxidim; idim >= 0; --idim)
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{
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mystart[idim] = start != NULL
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? start[idim]
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: 0;
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if (edges != NULL && edges[idim] == 0)
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{
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status = NC_NOERR; /* read/write no data */
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goto done;
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}
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#ifdef COMPLEX
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myedges[idim] = edges != NULL
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? edges[idim]
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: idim == 0 && isrecvar
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? numrecs - mystart[idim]
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: varshape[idim] - mystart[idim];
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#else
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if(edges != NULL)
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myedges[idim] = edges[idim];
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else if (idim == 0 && isrecvar)
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myedges[idim] = numrecs - mystart[idim];
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else
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myedges[idim] = varshape[idim] - mystart[idim];
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#endif
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mystride[idim] = stride != NULL
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? stride[idim]
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: 1;
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/* Remember: imapp is byte oriented, not index oriented */
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#ifdef COMPLEX
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mymap[idim] = (imapp != NULL
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? imapp[idim]
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: (idim == maxidim ? 1
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: mymap[idim + 1] * (ptrdiff_t) myedges[idim + 1]));
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#else
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if(imapp != NULL)
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mymap[idim] = imapp[idim];
|
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else if (idim == maxidim)
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mymap[idim] = 1;
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else
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mymap[idim] =
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mymap[idim + 1] * (ptrdiff_t) myedges[idim + 1];
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#endif
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iocount[idim] = 1;
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length[idim] = mymap[idim] * myedges[idim];
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stop[idim] = mystart[idim] + myedges[idim] * mystride[idim];
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}
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|
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/*
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* Check start, edges
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*/
|
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for (idim = maxidim; idim >= 0; --idim)
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{
|
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size_t dimlen =
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idim == 0 && isrecvar
|
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? numrecs
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: varshape[idim];
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if (mystart[idim] >= dimlen)
|
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{
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status = NC_EINVALCOORDS;
|
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goto done;
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}
|
|
|
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if (mystart[idim] + myedges[idim] > dimlen)
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{
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status = NC_EEDGE;
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goto done;
|
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}
|
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}
|
|
|
|
|
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/* Lower body */
|
|
/*
|
|
* As an optimization, adjust I/O parameters when the fastest
|
|
* dimension has unity stride both externally and internally.
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|
* In this case, the user could have called a simpler routine
|
|
* (i.e. ncvar$1()
|
|
*/
|
|
if (mystride[maxidim] == 1
|
|
&& mymap[maxidim] == 1)
|
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{
|
|
iocount[maxidim] = myedges[maxidim];
|
|
mystride[maxidim] = (ptrdiff_t) myedges[maxidim];
|
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mymap[maxidim] = (ptrdiff_t) length[maxidim];
|
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}
|
|
|
|
/*
|
|
* Perform I/O. Exit when done.
|
|
*/
|
|
for (;;)
|
|
{
|
|
/* TODO: */
|
|
int lstatus = NC_get_vara(ncid, varid, mystart, iocount,
|
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value, memtype);
|
|
if (lstatus != NC_NOERR) {
|
|
if(status == NC_NOERR || lstatus != NC_ERANGE)
|
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status = lstatus;
|
|
}
|
|
/*
|
|
* The following code permutes through the variable s
|
|
* external start-index space and it s internal address
|
|
* space. At the UPC, this algorithm is commonly
|
|
* called "odometer code".
|
|
*/
|
|
idim = maxidim;
|
|
carry:
|
|
value += (mymap[idim] * memtypelen);
|
|
mystart[idim] += mystride[idim];
|
|
if (mystart[idim] == stop[idim])
|
|
{
|
|
mystart[idim] = start[idim];
|
|
value -= (length[idim] * memtypelen);
|
|
if (--idim < 0)
|
|
break; /* normal return */
|
|
goto carry;
|
|
}
|
|
} /* I/O loop */
|
|
done:
|
|
free(mystart);
|
|
} /* variable is array */
|
|
return status;
|
|
}
|
|
|
|
/** \ingroup variables
|
|
\internal
|
|
Called by externally visible nc_get_vars_xxx routines */
|
|
static int
|
|
NC_get_vars(int ncid, int varid, const size_t *start,
|
|
const size_t *edges, const ptrdiff_t *stride, void *value,
|
|
nc_type memtype)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
|
|
if(stat != NC_NOERR) return stat;
|
|
#ifdef USE_NETCDF4
|
|
if(memtype >= NC_FIRSTUSERTYPEID) memtype = NC_NAT;
|
|
#endif
|
|
return ncp->dispatch->get_vars(ncid,varid,start,edges,stride,value,memtype);
|
|
}
|
|
|
|
/** \ingroup variables
|
|
\internal
|
|
Called by externally visible nc_get_varm_xxx routines
|
|
*/
|
|
static int
|
|
NC_get_varm(int ncid, int varid, const size_t *start,
|
|
const size_t *edges, const ptrdiff_t *stride, const ptrdiff_t* map,
|
|
void *value, nc_type memtype)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
|
|
if(stat != NC_NOERR) return stat;
|
|
#ifdef USE_NETCDF4
|
|
if(memtype >= NC_FIRSTUSERTYPEID) memtype = NC_NAT;
|
|
#endif
|
|
return ncp->dispatch->get_varm(ncid,varid,start,edges,stride,map,value,memtype);
|
|
}
|
|
|
|
/** \name Reading Data from Variables
|
|
|
|
Functions to read data from variables. */
|
|
/*! \{ */ /* All these functions are part of this named group... */
|
|
|
|
/** \ingroup variables
|
|
Read an array of values from a variable.
|
|
|
|
The array to be read is specified by giving a corner and a vector of
|
|
edge lengths to \ref specify_hyperslab.
|
|
|
|
The data values are read into consecutive locations with the last
|
|
dimension varying fastest. The netCDF dataset must be in data mode
|
|
(for netCDF-4/HDF5 files, the switch to data mode will happen
|
|
automatically, unless the classic model is used).
|
|
|
|
The nc_get_vara() function will read a variable of any type,
|
|
including user defined type. For this function, the type of the data
|
|
in memory must match the type of the variable - no data conversion is
|
|
done.
|
|
|
|
Other nc_get_vara_ functions will convert data to the desired output
|
|
type as needed.
|
|
|
|
\param ncid NetCDF or group ID, from a previous call to nc_open(),
|
|
nc_create(), nc_def_grp(), or associated inquiry functions such as
|
|
nc_inq_ncid().
|
|
|
|
\param varid Variable ID
|
|
|
|
\param startp Start vector with one element for each dimension to \ref
|
|
specify_hyperslab.
|
|
|
|
\param countp Count vector with one element for each dimension to \ref
|
|
specify_hyperslab.
|
|
|
|
\param ip Pointer where the data will be copied. Memory must be
|
|
allocated by the user before this function is called.
|
|
|
|
\returns ::NC_NOERR No error.
|
|
\returns ::NC_ENOTVAR Variable not found.
|
|
\returns ::NC_EINVALCOORDS Index exceeds dimension bound.
|
|
\returns ::NC_EEDGE Start+count exceeds dimension bound.
|
|
\returns ::NC_ERANGE One or more of the values are out of range.
|
|
\returns ::NC_EINDEFINE Operation not allowed in define mode.
|
|
\returns ::NC_EBADID Bad ncid.
|
|
|
|
\section Example
|
|
|
|
Here is an example using nc_get_vara_double() to read all the values of
|
|
the variable named rh from an existing netCDF dataset named
|
|
foo.nc. For simplicity in this example, we assume that we know that rh
|
|
is dimensioned with time, lat, and lon, and that there are three time
|
|
values, five lat values, and ten lon values.
|
|
|
|
\code
|
|
#include <netcdf.h>
|
|
...
|
|
#define TIMES 3
|
|
#define LATS 5
|
|
#define LONS 10
|
|
int status;
|
|
int ncid;
|
|
int rh_id;
|
|
static size_t start[] = {0, 0, 0};
|
|
static size_t count[] = {TIMES, LATS, LONS};
|
|
double rh_vals[TIMES*LATS*LONS];
|
|
...
|
|
status = nc_open("foo.nc", NC_NOWRITE, &ncid);
|
|
if (status != NC_NOERR) handle_error(status);
|
|
...
|
|
status = nc_inq_varid (ncid, "rh", &rh_id);
|
|
if (status != NC_NOERR) handle_error(status);
|
|
...
|
|
status = nc_get_vara_double(ncid, rh_id, start, count, rh_vals);
|
|
if (status != NC_NOERR) handle_error(status);
|
|
\endcode
|
|
*/
|
|
/**@{*/
|
|
int
|
|
nc_get_vara(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, void *ip)
|
|
{
|
|
NC* ncp = NULL;
|
|
nc_type xtype = NC_NAT;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
stat = nc_inq_vartype(ncid, varid, &xtype);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid, varid, startp, countp, ip, xtype);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_text(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid, varid, startp, countp,
|
|
(void *)ip, NC_CHAR);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_schar(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, signed char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid, varid, startp, countp,
|
|
(void *)ip, NC_BYTE);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_uchar(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, unsigned char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid, varid, startp, countp,
|
|
(void *)ip, T_uchar);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_short(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, short *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid, varid, startp, countp,
|
|
(void *)ip, NC_SHORT);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_int(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp, int *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,NC_INT);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_long(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp, long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_long);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_float(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp, float *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_float);
|
|
}
|
|
|
|
|
|
int
|
|
nc_get_vara_double(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, double *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_double);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_ubyte(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp, unsigned char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_ubyte);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_ushort(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp, unsigned short *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_ushort);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_uint(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp, unsigned int *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_uint);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_longlong(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp, long long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_longlong);
|
|
}
|
|
|
|
int
|
|
nc_get_vara_ulonglong(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp, unsigned long long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,NC_UINT64);
|
|
}
|
|
|
|
#ifdef USE_NETCDF4
|
|
int
|
|
nc_get_vara_string(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp, char* *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vara(ncid,varid,startp,countp, (void *)ip,NC_STRING);
|
|
}
|
|
|
|
#endif /*USE_NETCDF4*/
|
|
/**@}*/
|
|
|
|
/** \ingroup variables
|
|
Read a single datum from a variable.
|
|
|
|
Inputs are the netCDF ID, the variable ID, a multidimensional index
|
|
that specifies which value to get, and the address of a location into
|
|
which the data value will be read. The value is converted from the
|
|
external data type of the variable, if necessary.
|
|
|
|
The nc_get_var1() function will read a variable of any type, including
|
|
user defined type. For this function, the type of the data in memory
|
|
must match the type of the variable - no data conversion is done.
|
|
|
|
Other nc_get_var1_ functions will convert data to the desired output
|
|
type as needed.
|
|
|
|
\param ncid NetCDF or group ID, from a previous call to nc_open(),
|
|
nc_create(), nc_def_grp(), or associated inquiry functions such as
|
|
nc_inq_ncid().
|
|
|
|
\param varid Variable ID
|
|
|
|
\param indexp Index vector with one element for each dimension.
|
|
|
|
\param ip Pointer where the data will be copied. Memory must be
|
|
allocated by the user before this function is called.
|
|
|
|
\returns ::NC_NOERR No error.
|
|
\returns ::NC_ENOTVAR Variable not found.
|
|
\returns ::NC_EINVALCOORDS Index exceeds dimension bound.
|
|
\returns ::NC_ERANGE One or more of the values are out of range.
|
|
\returns ::NC_EINDEFINE Operation not allowed in define mode.
|
|
\returns ::NC_EBADID Bad ncid.
|
|
*/
|
|
/** \{ */
|
|
int
|
|
nc_get_var1(int ncid, int varid, const size_t *indexp, void *ip)
|
|
{
|
|
return NC_get_var1(ncid, varid, indexp, ip, NC_NAT);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_text(int ncid, int varid, const size_t *indexp, char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_CHAR);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_schar(int ncid, int varid, const size_t *indexp, signed char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_BYTE);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_uchar(int ncid, int varid, const size_t *indexp, unsigned char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_UBYTE);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_short(int ncid, int varid, const size_t *indexp, short *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_SHORT);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_int(int ncid, int varid, const size_t *indexp, int *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_INT);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_long(int ncid, int varid, const size_t *indexp,
|
|
long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, longtype);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_float(int ncid, int varid, const size_t *indexp,
|
|
float *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_FLOAT);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_double(int ncid, int varid, const size_t *indexp,
|
|
double *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_DOUBLE);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_ubyte(int ncid, int varid, const size_t *indexp,
|
|
unsigned char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_UBYTE);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_ushort(int ncid, int varid, const size_t *indexp,
|
|
unsigned short *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_USHORT);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_uint(int ncid, int varid, const size_t *indexp,
|
|
unsigned int *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_UINT);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_longlong(int ncid, int varid, const size_t *indexp,
|
|
long long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_INT64);
|
|
}
|
|
|
|
int
|
|
nc_get_var1_ulonglong(int ncid, int varid, const size_t *indexp,
|
|
unsigned long long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_UINT64);
|
|
}
|
|
|
|
#ifdef USE_NETCDF4
|
|
int
|
|
nc_get_var1_string(int ncid, int varid, const size_t *indexp, char* *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_STRING);
|
|
}
|
|
#endif /*USE_NETCDF4*/
|
|
/** \} */
|
|
|
|
/** \ingroup variables
|
|
Read an entire variable in one call.
|
|
|
|
This function will read all the values from a netCDF variable of an
|
|
open netCDF dataset.
|
|
|
|
This is the simplest interface to use for reading the value of a
|
|
scalar variable or when all the values of a multidimensional variable
|
|
can be read at once. The values are read into consecutive locations
|
|
with the last dimension varying fastest. The netCDF dataset must be in
|
|
data mode.
|
|
|
|
Take care when using this function with record variables (variables
|
|
that use the ::NC_UNLIMITED dimension). If you try to read all the
|
|
values of a record variable into an array but there are more records
|
|
in the file than you assume, more data will be read than you expect,
|
|
which may cause a segmentation violation. To avoid such problems, it
|
|
is better to use the nc_get_vara interfaces for variables that use the
|
|
::NC_UNLIMITED dimension.
|
|
|
|
The functions for types ubyte, ushort, uint, longlong, ulonglong, and
|
|
string are only available for netCDF-4/HDF5 files.
|
|
|
|
The nc_get_var() function will read a variable of any type, including
|
|
user defined type. For this function, the type of the data in memory
|
|
must match the type of the variable - no data conversion is done.
|
|
|
|
\param ncid NetCDF or group ID, from a previous call to nc_open(),
|
|
nc_create(), nc_def_grp(), or associated inquiry functions such as
|
|
nc_inq_ncid().
|
|
|
|
\param varid Variable ID
|
|
|
|
\param ip Pointer where the data will be copied. Memory must be
|
|
allocated by the user before this function is called.
|
|
|
|
\returns ::NC_NOERR No error.
|
|
\returns ::NC_ENOTVAR Variable not found.
|
|
\returns ::NC_ERANGE One or more of the values are out of range.
|
|
\returns ::NC_EINDEFINE Operation not allowed in define mode.
|
|
\returns ::NC_EBADID Bad ncid.
|
|
*/
|
|
/** \{ */
|
|
int
|
|
nc_get_var(int ncid, int varid, void *ip)
|
|
{
|
|
return NC_get_var(ncid, varid, ip, NC_NAT);
|
|
}
|
|
|
|
int
|
|
nc_get_var_text(int ncid, int varid, char *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid, varid, (void *)ip, NC_CHAR);
|
|
}
|
|
|
|
int
|
|
nc_get_var_schar(int ncid, int varid, signed char *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid, varid, (void *)ip, NC_BYTE);
|
|
}
|
|
|
|
int
|
|
nc_get_var_uchar(int ncid, int varid, unsigned char *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip, NC_UBYTE);
|
|
}
|
|
|
|
int
|
|
nc_get_var_short(int ncid, int varid, short *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid, varid, (void *)ip, NC_SHORT);
|
|
}
|
|
|
|
int
|
|
nc_get_var_int(int ncid, int varid, int *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip, NC_INT);
|
|
}
|
|
|
|
int
|
|
nc_get_var_long(int ncid, int varid, long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip, longtype);
|
|
}
|
|
|
|
int
|
|
nc_get_var_float(int ncid, int varid, float *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip, NC_FLOAT);
|
|
}
|
|
|
|
int
|
|
nc_get_var_double(int ncid, int varid, double *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip, NC_DOUBLE);
|
|
}
|
|
|
|
int
|
|
nc_get_var_ubyte(int ncid, int varid, unsigned char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip, NC_UBYTE);
|
|
}
|
|
|
|
int
|
|
nc_get_var_ushort(int ncid, int varid, unsigned short *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip, NC_USHORT);
|
|
}
|
|
|
|
int
|
|
nc_get_var_uint(int ncid, int varid, unsigned int *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip, NC_UINT);
|
|
}
|
|
|
|
int
|
|
nc_get_var_longlong(int ncid, int varid, long long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip, NC_INT64);
|
|
}
|
|
|
|
int
|
|
nc_get_var_ulonglong(int ncid, int varid, unsigned long long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip,NC_UINT64);
|
|
}
|
|
|
|
#ifdef USE_NETCDF4
|
|
int
|
|
nc_get_var_string(int ncid, int varid, char* *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_var(ncid,varid, (void *)ip,NC_STRING);
|
|
}
|
|
#endif /*USE_NETCDF4*/
|
|
/** \} */
|
|
|
|
/** \ingroup variables
|
|
Read a strided array from a variable.
|
|
|
|
This function reads a subsampled (strided) array section of values
|
|
from a netCDF variable of an open netCDF dataset. The subsampled array
|
|
section is specified by giving a corner, a vector of edge lengths, and
|
|
a stride vector. The values are read with the last dimension of the
|
|
netCDF variable varying fastest. The netCDF dataset must be in data
|
|
mode.
|
|
|
|
The nc_get_vars() function will read a variable of any type, including
|
|
user defined type. For this function, the type of the data in memory
|
|
must match the type of the variable - no data conversion is done.
|
|
|
|
\param ncid NetCDF or group ID, from a previous call to nc_open(),
|
|
nc_create(), nc_def_grp(), or associated inquiry functions such as
|
|
nc_inq_ncid().
|
|
|
|
\param varid Variable ID
|
|
|
|
\param startp Start vector with one element for each dimension to \ref
|
|
specify_hyperslab.
|
|
|
|
\param countp Count vector with one element for each dimension to \ref
|
|
specify_hyperslab.
|
|
|
|
\param stridep Stride vector with one element for each dimension to
|
|
\ref specify_hyperslab.
|
|
|
|
\param ip Pointer where the data will be copied. Memory must be
|
|
allocated by the user before this function is called.
|
|
|
|
\returns ::NC_NOERR No error.
|
|
\returns ::NC_ENOTVAR Variable not found.
|
|
\returns ::NC_EINVALCOORDS Index exceeds dimension bound.
|
|
\returns ::NC_ERANGE One or more of the values are out of range.
|
|
\returns ::NC_EINDEFINE Operation not allowed in define mode.
|
|
\returns ::NC_EBADID Bad ncid.
|
|
*/
|
|
/** \{ */
|
|
int
|
|
nc_get_vars (int ncid, int varid, const size_t * startp,
|
|
const size_t * countp, const ptrdiff_t * stridep,
|
|
void *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_NOERR;
|
|
|
|
if ((stat = NC_check_id(ncid, &ncp)))
|
|
return stat;
|
|
return ncp->dispatch->get_vars(ncid, varid, startp, countp, stridep,
|
|
ip, NC_NAT);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_text(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp, countp, stridep,
|
|
(void *)ip, NC_CHAR);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_schar(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
signed char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp, countp, stridep,
|
|
(void *)ip, NC_BYTE);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_uchar(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
unsigned char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp, countp, stridep,
|
|
(void *)ip, T_uchar);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_short(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t *stridep,
|
|
short *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp, countp, stridep,
|
|
(void *)ip, NC_SHORT);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_int(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
int *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp, countp, stridep,
|
|
(void *)ip, NC_INT);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_long(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp, countp, stridep,
|
|
(void *)ip, T_long);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_float(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
float *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp, countp, stridep,
|
|
(void *)ip, T_float);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_double(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
double *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp, countp, stridep,
|
|
(void *)ip, T_double);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_ubyte(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
unsigned char *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid, startp, countp, stridep,
|
|
(void *)ip, T_ubyte);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_ushort(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
unsigned short *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp,countp, stridep,
|
|
(void *)ip, T_ushort);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_uint(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
unsigned int *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid,varid,startp, countp, stridep,
|
|
(void *)ip, T_uint);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_longlong(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
long long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid, varid, startp, countp, stridep,
|
|
(void *)ip, T_longlong);
|
|
}
|
|
|
|
int
|
|
nc_get_vars_ulonglong(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t * stridep,
|
|
unsigned long long *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid, varid, startp, countp, stridep,
|
|
(void *)ip, NC_UINT64);
|
|
}
|
|
|
|
#ifdef USE_NETCDF4
|
|
int
|
|
nc_get_vars_string(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t * stridep,
|
|
char* *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_vars(ncid, varid, startp, countp, stridep,
|
|
(void *)ip, NC_STRING);
|
|
}
|
|
#endif /*USE_NETCDF4*/
|
|
/** \} */
|
|
|
|
/** \ingroup variables
|
|
Read a mapped array from a variable.
|
|
|
|
The nc_get_varm_ type family of functions reads a mapped array section
|
|
of values from a netCDF variable of an open netCDF dataset. The mapped
|
|
array section is specified by giving a corner, a vector of edge
|
|
lengths, a stride vector, and an index mapping vector. The index
|
|
mapping vector is a vector of integers that specifies the mapping
|
|
between the dimensions of a netCDF variable and the in-memory
|
|
structure of the internal data array. No assumptions are made about
|
|
the ordering or length of the dimensions of the data array. The netCDF
|
|
dataset must be in data mode.
|
|
|
|
The functions for types ubyte, ushort, uint, longlong, ulonglong, and
|
|
string are only available for netCDF-4/HDF5 files.
|
|
|
|
The nc_get_varm() function will only read a variable of an
|
|
atomic type; it will not read user defined types. For this
|
|
function, the type of the data in memory must match the type
|
|
of the variable - no data conversion is done.
|
|
|
|
\param ncid NetCDF or group ID, from a previous call to nc_open(),
|
|
nc_create(), nc_def_grp(), or associated inquiry functions such as
|
|
nc_inq_ncid().
|
|
|
|
\param varid Variable ID
|
|
|
|
\param startp Start vector with one element for each dimension to \ref
|
|
specify_hyperslab.
|
|
|
|
\param countp Count vector with one element for each dimension to \ref
|
|
specify_hyperslab.
|
|
|
|
\param stridep Stride vector with one element for each dimension to
|
|
\ref specify_hyperslab.
|
|
|
|
\param imapp Mapping vector with one element for each dimension to
|
|
\ref specify_hyperslab.
|
|
|
|
\param ip Pointer where the data will be copied. Memory must be
|
|
allocated by the user before this function is called.
|
|
|
|
\returns ::NC_NOERR No error.
|
|
\returns ::NC_ENOTVAR Variable not found.
|
|
\returns ::NC_EINVALCOORDS Index exceeds dimension bound.
|
|
\returns ::NC_ERANGE One or more of the values are out of range.
|
|
\returns ::NC_EINDEFINE Operation not allowed in define mode.
|
|
\returns ::NC_EBADID Bad ncid.
|
|
*/
|
|
/** \{ */
|
|
int
|
|
nc_get_varm(int ncid, int varid, const size_t * startp,
|
|
const size_t * countp, const ptrdiff_t * stridep,
|
|
const ptrdiff_t * imapp, void *ip)
|
|
{
|
|
NC* ncp;
|
|
int stat = NC_NOERR;
|
|
|
|
if ((stat = NC_check_id(ncid, &ncp)))
|
|
return stat;
|
|
return ncp->dispatch->get_varm(ncid, varid, startp, countp,
|
|
stridep, imapp, ip, NC_NAT);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_schar(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep,
|
|
const ptrdiff_t *imapp, signed char *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid, varid, startp, countp,
|
|
stridep, imapp, (void *)ip, NC_BYTE);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_uchar(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep, const ptrdiff_t *imapp,
|
|
unsigned char *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,T_uchar);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_short(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t *stridep,
|
|
const ptrdiff_t *imapp, short *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,NC_SHORT);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_int(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep, const ptrdiff_t *imapp,
|
|
int *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,NC_INT);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_long(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep, const ptrdiff_t *imapp,
|
|
long *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,T_long);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_float(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep, const ptrdiff_t *imapp,
|
|
float *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,T_float);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_double(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep, const ptrdiff_t *imapp,
|
|
double *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,T_double);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_ubyte(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep, const ptrdiff_t *imapp,
|
|
unsigned char *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid,varid,startp,countp,stridep,
|
|
imapp, (void *)ip, T_ubyte);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_ushort(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep, const ptrdiff_t *imapp,
|
|
unsigned short *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid, varid, startp, countp, stridep,
|
|
imapp, (void *)ip, T_ushort);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_uint(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep, const ptrdiff_t *imapp,
|
|
unsigned int *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid, varid, startp, countp,
|
|
stridep, imapp, (void *)ip, T_uint);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_longlong(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t *stridep,
|
|
const ptrdiff_t *imapp, long long *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid, varid, startp, countp, stridep, imapp,
|
|
(void *)ip, T_longlong);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_ulonglong(int ncid, int varid,
|
|
const size_t *startp, const size_t *countp,
|
|
const ptrdiff_t *stridep, const ptrdiff_t *imapp,
|
|
unsigned long long *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid, varid, startp, countp, stridep, imapp,
|
|
(void *)ip, NC_UINT64);
|
|
}
|
|
|
|
int
|
|
nc_get_varm_text(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t *stridep,
|
|
const ptrdiff_t *imapp, char *ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid, varid, startp, countp, stridep, imapp,
|
|
(void *)ip, NC_CHAR);
|
|
}
|
|
|
|
#ifdef USE_NETCDF4
|
|
int
|
|
nc_get_varm_string(int ncid, int varid, const size_t *startp,
|
|
const size_t *countp, const ptrdiff_t *stridep,
|
|
const ptrdiff_t *imapp, char **ip)
|
|
{
|
|
NC *ncp;
|
|
int stat = NC_check_id(ncid, &ncp);
|
|
if(stat != NC_NOERR) return stat;
|
|
return NC_get_varm(ncid, varid, startp, countp, stridep, imapp,
|
|
(void *)ip, NC_STRING);
|
|
}
|
|
/** \} */
|
|
#endif /*USE_NETCDF4*/
|
|
|
|
|
|
/*! \} */ /* End of named group... */
|
|
|