mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-11-27 07:30:33 +08:00
eb3d9eb0c9
Primary changes: * Add an improved cache system to speed up performance. * Fix NCZarr to properly handle scalar variables. Misc. Related Changes: * Added unit tests for extendible hash and for the generic cache. * Add config parameter to set size of the NCZarr cache. * Add initial performance tests but leave them unused. * Add CRC64 support. * Move location of ncdumpchunks utility from /ncgen to /ncdump. * Refactor auth support. Misc. Unrelated Changes: * More cleanup of the S3 support * Add support for S3 authentication in .rc files: HTTP.S3.ACCESSID and HTTP.S3.SECRETKEY. * Remove the hashkey from the struct OBJHDR since it is never used.
279 lines
8.1 KiB
C
279 lines
8.1 KiB
C
/* Copyright 2003-2019, University Corporation for Atmospheric
|
|
* Research. See the COPYRIGHT file for copying and redistribution
|
|
* conditions. */
|
|
|
|
/**
|
|
* @file @internal This file is part of netcdf-4, a netCDF-like
|
|
* interface for NCZ, or a ZARR backend for netCDF, depending on your
|
|
* point of view.
|
|
*
|
|
* This file includes the ZARR code to deal with dimensions.
|
|
*
|
|
* @author Dennis Heimbigner, Ed Hartnett
|
|
*/
|
|
|
|
#include "zincludes.h"
|
|
|
|
/**
|
|
* @internal Dimensions are defined in attributes attached to the
|
|
* appropriate group in the data file.
|
|
*
|
|
* @param ncid File and group ID.
|
|
* @param name Name of the new dimension.
|
|
* @param len Length of the new dimension.
|
|
* @param idp Pointer that gets the ID of the new dimension. Ignored
|
|
* if NULL.
|
|
*
|
|
* @return ::NC_NOERR No error.
|
|
* @return ::NC_EBADID Bad ncid.
|
|
* @return ::NC_EMAXNAME Name is too long.
|
|
* @return ::NC_EBADNAME Name breaks netCDF name rules.
|
|
* @return ::NC_EINVAL Invalid input.
|
|
* @return ::NC_EPERM Read-only file.
|
|
* @return ::NC_EUNLIMIT Only one unlimited dim for classic model.
|
|
* @return ::NC_ENOTINDEFINE Not in define mode.
|
|
* @return ::NC_EDIMSIZE Dim length too large.
|
|
* @return ::NC_ENAMEINUSE Name already in use in group.
|
|
* @return ::NC_ENOMEM Out of memory.
|
|
* @author Dennis Heimbigner, Ed Hartnett
|
|
*/
|
|
int
|
|
NCZ_def_dim(int ncid, const char *name, size_t len, int *idp)
|
|
{
|
|
NC *nc;
|
|
NC_GRP_INFO_T *grp;
|
|
NC_FILE_INFO_T *h5;
|
|
NC_DIM_INFO_T *dim;
|
|
char norm_name[NC_MAX_NAME + 1];
|
|
int stat = NC_NOERR;
|
|
|
|
LOG((2, "%s: ncid 0x%x name %s len %d", __func__, ncid, name,
|
|
(int)len));
|
|
|
|
/* Find our global metadata structure. */
|
|
if ((stat = nc4_find_nc_grp_h5(ncid, &nc, &grp, &h5)))
|
|
return stat;
|
|
assert(h5 && nc && grp);
|
|
|
|
/* If the file is read-only, return an error. */
|
|
if (h5->no_write)
|
|
return NC_EPERM;
|
|
|
|
/* Check some stuff if strict nc3 rules are in effect. */
|
|
if (h5->cmode & NC_CLASSIC_MODEL)
|
|
{
|
|
#ifdef LOOK
|
|
/* Only one limited dimenson for strict nc3. */
|
|
if (len == NC_UNLIMITED) {
|
|
int i;
|
|
for(i=0;i<ncindexsize(grp->dim);i++) {
|
|
dim = (NC_DIM_INFO_T*)ncindexith(grp->dim,i);
|
|
if(dim == NULL) continue;
|
|
if (dim->unlimited)
|
|
return NC_EUNLIMIT;
|
|
}
|
|
}
|
|
/* Must be in define mode for stict nc3. */
|
|
if (!(h5->flags & NC_INDEF))
|
|
return NC_ENOTINDEFINE;
|
|
#endif
|
|
}
|
|
|
|
/* Make sure this is a valid netcdf name. */
|
|
if ((stat = nc4_check_name(name, norm_name)))
|
|
return stat;
|
|
|
|
/* Since unlimited is not supported, len > 0 */
|
|
if(len <= 0)
|
|
return NC_EDIMSIZE;
|
|
|
|
/* For classic model: dim length has to fit in a 32-bit unsigned
|
|
* int, as permitted for 64-bit offset format. */
|
|
if (h5->cmode & NC_CLASSIC_MODEL)
|
|
if(len > X_UINT_MAX) /* Backward compat */
|
|
return NC_EDIMSIZE;
|
|
|
|
/* Make sure the name is not already in use. */
|
|
dim = (NC_DIM_INFO_T*)ncindexlookup(grp->dim,norm_name);
|
|
if(dim != NULL)
|
|
return NC_ENAMEINUSE;
|
|
|
|
/* If it's not in define mode, enter define mode. Do this only
|
|
* after checking all input data, so we only enter define mode if
|
|
* input is good. */
|
|
if (!(h5->flags & NC_INDEF))
|
|
if ((stat = NCZ_redef(ncid)))
|
|
return stat;
|
|
|
|
/* Add a dimension to the list. The ID must come from the file
|
|
* information, since dimids are visible in more than one group. */
|
|
if ((stat = nc4_dim_list_add(grp, norm_name, len, -1, &dim)))
|
|
return stat;
|
|
|
|
/* Create struct for NCZ-specific dim info. */
|
|
if (!(dim->format_dim_info = calloc(1, sizeof(NCZ_DIM_INFO_T))))
|
|
return NC_ENOMEM;
|
|
((NCZ_DIM_INFO_T*)dim->format_dim_info)->common.file = h5;
|
|
|
|
/* Pass back the dimid. */
|
|
if (idp)
|
|
*idp = dim->hdr.id;
|
|
|
|
return stat;
|
|
}
|
|
|
|
/**
|
|
* @internal Find out name and len of a dim. For an unlimited
|
|
* dimension, the length is the largest length so far written. If the
|
|
* name of lenp pointers are NULL, they will be ignored.
|
|
*
|
|
* @param ncid File and group ID.
|
|
* @param dimid Dimension ID.
|
|
* @param name Pointer that gets name of the dimension.
|
|
* @param lenp Pointer that gets length of dimension.
|
|
*
|
|
* @return ::NC_NOERR No error.
|
|
* @return ::NC_EBADID Bad ncid.
|
|
* @return ::NC_EDIMSIZE Dimension length too large.
|
|
* @return ::NC_EBADDIM Dimension not found.
|
|
* @author Dennis Heimbigner, Ed Hartnett
|
|
*/
|
|
int
|
|
NCZ_inq_dim(int ncid, int dimid, char *name, size_t *lenp)
|
|
{
|
|
NC *nc;
|
|
NC_FILE_INFO_T *h5;
|
|
NC_GRP_INFO_T *grp, *dim_grp;
|
|
NC_DIM_INFO_T *dim;
|
|
int stat = NC_NOERR;
|
|
|
|
LOG((2, "%s: ncid 0x%x dimid %d", __func__, ncid, dimid));
|
|
|
|
/* Find our global metadata structure. */
|
|
if ((stat = nc4_find_nc_grp_h5(ncid, &nc, &grp, &h5)))
|
|
return stat;
|
|
assert(h5 && nc && grp);
|
|
|
|
/* Find the dimension and its home group. */
|
|
if ((stat = nc4_find_dim(grp, dimid, &dim, &dim_grp)))
|
|
return stat;
|
|
assert(dim);
|
|
|
|
/* Return the dimension name, if the caller wants it. */
|
|
if (name && dim->hdr.name)
|
|
strcpy(name, dim->hdr.name);
|
|
|
|
/* Return the dimension length, if the caller wants it. */
|
|
if (lenp)
|
|
{
|
|
#ifdef LOOK
|
|
if (dim->unlimited)
|
|
{
|
|
/* Since this is an unlimited dimension, go to the file
|
|
and see how many records there are. Take the max number
|
|
of records from all the vars that share this
|
|
dimension. */
|
|
*lenp = 0;
|
|
if ((stat = ncz_find_dim_len(dim_grp, dimid, &lenp)))
|
|
return stat;
|
|
}
|
|
else
|
|
#endif
|
|
{
|
|
if (dim->too_long)
|
|
{
|
|
stat = NC_EDIMSIZE;
|
|
*lenp = NC_MAX_UINT;
|
|
}
|
|
else
|
|
*lenp = dim->len;
|
|
}
|
|
}
|
|
|
|
return stat;
|
|
}
|
|
|
|
/**
|
|
* @internal Rename a dimension, for those who like to prevaricate.
|
|
*
|
|
* @note If we're not in define mode, new name must be of equal or
|
|
* less size, if strict nc3 rules are in effect for this file. But we
|
|
* don't check this because reproducing the exact classic behavior
|
|
* would be too difficult. See github issue #1340.
|
|
*
|
|
* @param ncid File and group ID.
|
|
* @param dimid Dimension ID.
|
|
* @param name New dimension name.
|
|
*
|
|
* @return ::NC_NOERR No error.
|
|
* @return ::NC_EBADID Bad ncid.
|
|
* @return ::NC_EHDFERR ZARR returned error.
|
|
* @return ::NC_ENOMEM Out of memory.
|
|
* @return ::NC_EINVAL Name must be provided.
|
|
* @return ::NC_ENAMEINUSE Name is already in use in group.
|
|
* @return ::NC_EMAXNAME Name is too long.
|
|
* @return ::NC_EBADDIM Dimension not found.
|
|
* @return ::NC_EBADNAME Name breaks netCDF name rules.
|
|
* @return ::NC_EDIMMETA Unable to delete ZARR dataset.
|
|
* @author Dennis Heimbigner, Ed Hartnett
|
|
*/
|
|
int
|
|
NCZ_rename_dim(int ncid, int dimid, const char *name)
|
|
{
|
|
NC_GRP_INFO_T *grp;
|
|
NC_DIM_INFO_T *dim;
|
|
NC_FILE_INFO_T *h5;
|
|
char norm_name[NC_MAX_NAME + 1];
|
|
int stat;
|
|
|
|
/* Note: name is new name */
|
|
if (!name)
|
|
return NC_EINVAL;
|
|
|
|
LOG((2, "%s: ncid 0x%x dimid %d name %s", __func__, ncid,
|
|
dimid, name));
|
|
|
|
/* Find info for this file and group, and set pointer to each. */
|
|
if ((stat = nc4_find_grp_h5(ncid, &grp, &h5)))
|
|
return stat;
|
|
assert(h5 && grp);
|
|
|
|
/* Trying to write to a read-only file? No way, Jose! */
|
|
if (h5->no_write)
|
|
return NC_EPERM;
|
|
|
|
/* Make sure this is a valid netcdf name. */
|
|
if ((stat = nc4_check_name(name, norm_name)))
|
|
return stat;
|
|
|
|
/* Get the original dim. */
|
|
if ((stat = nc4_find_dim(grp, dimid, &dim, NULL)))
|
|
return stat;
|
|
assert(dim && dim->format_dim_info);
|
|
|
|
/* Check if new name is in use. */
|
|
if (ncindexlookup(grp->dim, norm_name))
|
|
return NC_ENAMEINUSE;
|
|
|
|
/* Give the dimension its new name in metadata. UTF8 normalization
|
|
* has been done. */
|
|
assert(dim->hdr.name);
|
|
free(dim->hdr.name);
|
|
if (!(dim->hdr.name = strdup(norm_name)))
|
|
return NC_ENOMEM;
|
|
LOG((3, "dim is now named %s", dim->hdr.name));
|
|
|
|
/* rebuild index. */
|
|
if (!ncindexrebuild(grp->dim))
|
|
return NC_EINTERNAL;
|
|
|
|
return NC_NOERR;
|
|
}
|
|
|
|
int
|
|
NCZ_inq_unlimdims(int ncid, int *ndimsp, int *unlimdimidsp)
|
|
{
|
|
if(ndimsp) *ndimsp = 0;
|
|
return NC_NOERR;
|
|
}
|