mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-12-21 08:39:46 +08:00
aeb3ac2809
re: https://github.com/Unidata/netcdf-c/issues/1836 Revert the internal filter code to simplify it. From the user's point of view, the only visible changes should be: 1. The functions that convert text to filter specs have had their signature reverted and have been moved to netcdf_aux.h 2. Some filter API functions now return NC_ENOFILTER when inquiry is made about some filter. Internally,the dispatch table has been modified to get rid of the filter_actions entry and associated complex structures. It has been replaced with inq_var_filter_ids and inq_var_filter_info entries and the dispatch table version has been bumped to 3. Corresponding NOOP and NOTNC4 functions were added to libdispatch/dnotnc4.c. Also, the filter_action entries in dispatch tables were replaced for all dispatch code bases (HDF5, DAP2, etc). This should only impact UDF users. In the process, it became clear that the form of the filters field in NC_VAR_INFO_T was format dependent, so I converted it to be of type void* and pushed its management into the various dispatch code bases. Specifically libhdf5 and libnczarr now manage the filters field in their own way. The auxilliary functions for parsing textual filter specifications were moved to netcdf_aux.h and were renamed to the following: * ncaux_h5filterspec_parse * ncaux_h5filterspec_parselist * ncaux_h5filterspec_free * ncaux_h5filter_fix8 Misc. Other Changes: 1. Document NUG/filters.md updated to reflect the changes above. 2. All the old data types (structs and enums) used by filter_actions actions were deleted. The exception is the NC_H5_Filterspec because it is needed by ncaux_h5filterspec_parselist. 3. Clientside filters were removed -- another enhancement for which no-one ever asked. 4. The ability to remove filters was itself removed. 5. Some functionality needed by nczarr was moved from libhdf5 to libsrc4 e.g. nc4_find_default_chunksizes 6. All the filterx code was removed 7. ncfilter.h and nc4filter.c no longer used Misc. Unrelated Changes: 1. The nczarr_test makefile clean was leaving some directories; so add clean-local to take care of them.
670 lines
14 KiB
C
670 lines
14 KiB
C
/*********************************************************************
|
|
* Copyright 2018, UCAR/Unidata
|
|
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
|
|
* $Header: /upc/share/CVS/netcdf-3/ncgen/util.c,v 1.4 2010/04/14 22:04:59 dmh Exp $
|
|
*********************************************************************/
|
|
|
|
#include "includes.h"
|
|
|
|
/* Track primitive symbol instances (initialized in ncgen.y) */
|
|
Symbol* primsymbols[PRIMNO];
|
|
|
|
char*
|
|
append(const char* s1, const char* s2)
|
|
{
|
|
int len = (s1?strlen(s1):0)+(s2?strlen(s2):0);
|
|
char* result = (char*)ecalloc(len+1);
|
|
result[0] = '\0';
|
|
if(s1) strcat(result,s1);
|
|
if(s2) strcat(result,s2);
|
|
return result;
|
|
}
|
|
|
|
|
|
unsigned int
|
|
chartohex(char c)
|
|
{
|
|
switch (c) {
|
|
case '0': case '1': case '2': case '3': case '4':
|
|
case '5': case '6': case '7': case '8': case '9':
|
|
return (c - '0');
|
|
case 'A': case 'B': case 'C':
|
|
case 'D': case 'E': case 'F':
|
|
return (c - 'A') + 0x0a;
|
|
case 'a': case 'b': case 'c':
|
|
case 'd': case 'e': case 'f':
|
|
return (c - 'a') + 0x0a;
|
|
}
|
|
return 0;
|
|
}
|
|
|
|
/*
|
|
* For generated Fortran, change 'e' to 'd' in exponent of double precision
|
|
* constants.
|
|
*/
|
|
void
|
|
expe2d(
|
|
char *cp) /* string containing double constant */
|
|
{
|
|
char *expchar = strrchr(cp,'e');
|
|
if (expchar) {
|
|
*expchar = 'd';
|
|
}
|
|
}
|
|
|
|
/* Returns non-zero if n is a power of 2, 0 otherwise */
|
|
int
|
|
pow2(
|
|
int n)
|
|
{
|
|
int m = n;
|
|
int p = 1;
|
|
|
|
while (m > 0) {
|
|
m /= 2;
|
|
p *= 2;
|
|
}
|
|
return p == 2*n;
|
|
}
|
|
|
|
|
|
/*
|
|
* Remove trailing zeros (after decimal point) but not trailing decimal
|
|
* point from ss, a string representation of a floating-point number that
|
|
* might include an exponent part.
|
|
*/
|
|
void
|
|
tztrim(
|
|
char *ss /* returned string representing dd */
|
|
)
|
|
{
|
|
char *cp, *ep;
|
|
|
|
cp = ss;
|
|
if (*cp == '-')
|
|
cp++;
|
|
while(isdigit((int)*cp) || *cp == '.')
|
|
cp++;
|
|
if (*--cp == '.')
|
|
return;
|
|
ep = cp+1;
|
|
while (*cp == '0')
|
|
cp--;
|
|
cp++;
|
|
if (cp == ep)
|
|
return;
|
|
while (*ep)
|
|
*cp++ = *ep++;
|
|
*cp = '\0';
|
|
return;
|
|
}
|
|
|
|
static void
|
|
clearSpecialdata(Specialdata* data)
|
|
{
|
|
if(data == NULL) return;
|
|
reclaimdatalist(data->_Fillvalue);
|
|
if(data->_ChunkSizes)
|
|
efree(data->_ChunkSizes);
|
|
if(data->_Filters) {
|
|
int i;
|
|
for(i=0;i<data->nfilters;i++) {
|
|
NC_H5_Filterspec* f = data->_Filters[i];
|
|
ncaux_h5filterspec_free(f);
|
|
}
|
|
efree(data->_Filters);
|
|
}
|
|
}
|
|
|
|
void
|
|
freeSymbol(Symbol* sym)
|
|
{
|
|
if(sym == NULL) return;
|
|
switch (sym->objectclass) {
|
|
case NC_VAR:
|
|
clearSpecialdata(&sym->var.special);
|
|
listfree(sym->var.attributes);
|
|
break;
|
|
case NC_TYPE:
|
|
if(sym->typ.econst)
|
|
reclaimconstant(sym->typ.econst);
|
|
if(sym->typ._Fillvalue)
|
|
reclaimdatalist(sym->typ._Fillvalue);
|
|
break;
|
|
case NC_GRP:
|
|
if(sym->file.filename)
|
|
efree(sym->file.filename);
|
|
break;
|
|
default: break;
|
|
}
|
|
/* Universal */
|
|
if(sym->name) efree(sym->name);
|
|
if(sym->fqn) efree(sym->fqn);
|
|
listfree(sym->prefix);
|
|
if(sym->data)
|
|
reclaimdatalist(sym->data);
|
|
listfree(sym->subnodes);
|
|
efree(sym);
|
|
}
|
|
|
|
char* nctypenames[17] = {
|
|
"NC_NAT",
|
|
"NC_BYTE", "NC_CHAR", "NC_SHORT", "NC_INT",
|
|
"NC_FLOAT", "NC_DOUBLE",
|
|
"NC_UBYTE", "NC_USHORT", "NC_UINT",
|
|
"NC_INT64", "NC_UINT64",
|
|
"NC_STRING",
|
|
"NC_VLEN", "NC_OPAQUE", "NC_ENUM", "NC_COMPOUND"
|
|
};
|
|
|
|
char* nctypenamesextend[9] = {
|
|
"NC_GRP", "NC_DIM", "NC_VAR", "NC_ATT", "NC_TYPE",
|
|
"NC_ECONST","NC_FIELD", "NC_ARRAY","NC_PRIM"
|
|
};
|
|
|
|
char*
|
|
nctypename(nc_type nctype)
|
|
{
|
|
char* s;
|
|
if(nctype >= NC_NAT && nctype <= NC_COMPOUND)
|
|
return nctypenames[nctype];
|
|
if(nctype >= NC_GRP && nctype <= NC_PRIM)
|
|
return nctypenamesextend[(nctype - NC_GRP)];
|
|
if(nctype == NC_FILLVALUE) return "NC_FILL";
|
|
if(nctype == NC_NIL) return "NC_NIL";
|
|
s = poolalloc(128);
|
|
sprintf(s,"NC_<%d>",nctype);
|
|
return s;
|
|
}
|
|
|
|
/* These are the augmented NC_ values (0 based from NC_GRP)*/
|
|
char* ncclassnames[9] = {
|
|
"NC_GRP", "NC_DIM", "NC_VAR", "NC_ATT",
|
|
"NC_TYP", "NC_ECONST", "NC_FIELD", "NC_ARRAY",
|
|
"NC_PRIM"
|
|
};
|
|
|
|
char*
|
|
ncclassname(nc_class ncc)
|
|
{
|
|
char* s;
|
|
if(ncc >= NC_NAT && ncc <= NC_COMPOUND)
|
|
return nctypename((nc_type)ncc);
|
|
if(ncc == NC_FILLVALUE) return "NC_FILL";
|
|
if(ncc >= NC_GRP && ncc <= NC_PRIM)
|
|
return ncclassnames[ncc - NC_GRP];
|
|
s = poolalloc(128);
|
|
sprintf(s,"NC_<%d>",ncc);
|
|
return s;
|
|
}
|
|
|
|
int ncsizes[17] = {
|
|
0,
|
|
1,1,2,4,
|
|
4,8,
|
|
1,2,4,
|
|
8,8,
|
|
sizeof(char*),
|
|
sizeof(nc_vlen_t),
|
|
0,0,0
|
|
};
|
|
|
|
int
|
|
ncsize(nc_type nctype)
|
|
{
|
|
if(nctype >= NC_NAT && nctype <= NC_COMPOUND)
|
|
return ncsizes[nctype];
|
|
return 0;
|
|
}
|
|
|
|
int
|
|
hasunlimited(Dimset* dimset)
|
|
{
|
|
int i;
|
|
for(i=0;i<dimset->ndims;i++) {
|
|
Symbol* dim = dimset->dimsyms[i];
|
|
if(dim->dim.declsize == NC_UNLIMITED) return 1;
|
|
}
|
|
return 0;
|
|
}
|
|
|
|
/* return 1 if first dimension is unlimited*/
|
|
int
|
|
isunlimited0(Dimset* dimset)
|
|
{
|
|
return (dimset->ndims > 0 && dimset->dimsyms[0]->dim.declsize == NC_UNLIMITED);
|
|
}
|
|
|
|
|
|
/* True only if dim[0] is unlimited all rest are bounded*/
|
|
/* or all are bounded*/
|
|
int
|
|
classicunlimited(Dimset* dimset)
|
|
{
|
|
int i;
|
|
int last = -1;
|
|
for(i=0;i<dimset->ndims;i++) {
|
|
Symbol* dim = dimset->dimsyms[i];
|
|
if(dim->dim.declsize == NC_UNLIMITED) last = i;
|
|
}
|
|
return (last < 1);
|
|
}
|
|
|
|
/* True only iff no dimension is unlimited*/
|
|
int
|
|
isbounded(Dimset* dimset)
|
|
{
|
|
int i;
|
|
for(i=0;i<dimset->ndims;i++) {
|
|
Symbol* dim = dimset->dimsyms[i];
|
|
if(dim->dim.declsize == NC_UNLIMITED) return 0;
|
|
}
|
|
return 1;
|
|
}
|
|
|
|
int
|
|
signedtype(nc_type nctype)
|
|
{
|
|
switch (nctype) {
|
|
case NC_BYTE:
|
|
case NC_SHORT:
|
|
case NC_INT:
|
|
case NC_INT64:
|
|
return nctype;
|
|
case NC_UBYTE: return NC_BYTE;
|
|
case NC_USHORT: return NC_SHORT;
|
|
case NC_UINT: return NC_INT;
|
|
case NC_UINT64: return NC_INT64;
|
|
default: break;
|
|
}
|
|
return nctype;
|
|
}
|
|
|
|
int
|
|
unsignedtype(nc_type nctype)
|
|
{
|
|
switch (nctype) {
|
|
case NC_UBYTE:
|
|
case NC_USHORT:
|
|
case NC_UINT:
|
|
case NC_UINT64:
|
|
return nctype;
|
|
case NC_BYTE: return NC_UBYTE;
|
|
case NC_SHORT: return NC_USHORT;
|
|
case NC_INT: return NC_UINT;
|
|
case NC_INT64: return NC_UINT64;
|
|
default: break;
|
|
}
|
|
return nctype;
|
|
}
|
|
|
|
int
|
|
isinttype(nc_type nctype)
|
|
{
|
|
return (nctype != NC_CHAR)
|
|
&& ((nctype >= NC_BYTE && nctype <= NC_INT)
|
|
|| (nctype >= NC_UBYTE && nctype <= NC_UINT64));
|
|
}
|
|
|
|
int
|
|
isuinttype(nc_type t)
|
|
{
|
|
return isinttype(t)
|
|
&& t >= NC_UBYTE
|
|
&& t <= NC_UINT64
|
|
&& t != NC_INT64;
|
|
}
|
|
|
|
int
|
|
isfloattype(nc_type nctype)
|
|
{
|
|
return (nctype == NC_FLOAT || nctype <= NC_DOUBLE);
|
|
}
|
|
|
|
int
|
|
isclassicprim(nc_type nctype)
|
|
{
|
|
return (nctype >= NC_BYTE && nctype <= NC_DOUBLE)
|
|
;
|
|
}
|
|
|
|
int
|
|
isclassicprimplus(nc_type nctype)
|
|
{
|
|
return (nctype >= NC_BYTE && nctype <= NC_DOUBLE)
|
|
|| (nctype == NC_STRING)
|
|
;
|
|
}
|
|
|
|
int
|
|
isprim(nc_type nctype)
|
|
{
|
|
return (nctype >= NC_BYTE && nctype <= NC_STRING)
|
|
;
|
|
}
|
|
|
|
int
|
|
isprimplus(nc_type nctype)
|
|
{
|
|
return (nctype >= NC_BYTE && nctype <= NC_STRING)
|
|
|| (nctype == NC_ECONST)
|
|
|| (nctype == NC_OPAQUE)
|
|
;
|
|
}
|
|
|
|
void
|
|
collectpath(Symbol* grp, List* grpstack)
|
|
{
|
|
while(grp != NULL) {
|
|
listpush(grpstack,(void*)grp);
|
|
grp = grp->container;
|
|
}
|
|
}
|
|
|
|
|
|
#ifdef USE_NETCDF4
|
|
/* Result is pool'd*/
|
|
char*
|
|
prefixtostring(List* prefix, char* separator)
|
|
{
|
|
int slen=0;
|
|
int plen;
|
|
int i;
|
|
char* result;
|
|
if(prefix == NULL) return pooldup("");
|
|
plen = prefixlen(prefix);
|
|
if(plen == 0) { /* root prefix*/
|
|
slen=0;
|
|
/* slen += strlen(separator);*/
|
|
slen++; /* for null terminator*/
|
|
result = poolalloc(slen);
|
|
result[0] = '\0';
|
|
/*strcat(result,separator);*/
|
|
} else {
|
|
for(i=0;i<plen;i++) {
|
|
Symbol* sym = (Symbol*)listget(prefix,i);
|
|
slen += (strlen(separator)+strlen(sym->name));
|
|
}
|
|
slen++; /* for null terminator*/
|
|
result = poolalloc(slen);
|
|
result[0] = '\0';
|
|
for(i=0;i<plen;i++) {
|
|
Symbol* sym = (Symbol*)listget(prefix,i);
|
|
strcat(result,separator);
|
|
strcat(result,sym->name); /* append "/<prefix[i]>"*/
|
|
}
|
|
}
|
|
return result;
|
|
}
|
|
#endif
|
|
|
|
/* Result is pool'd*/
|
|
char*
|
|
fullname(Symbol* sym)
|
|
{
|
|
#ifdef USE_NETCDF4
|
|
char* s1;
|
|
char* result;
|
|
char* prefix;
|
|
prefix = prefixtostring(sym->prefix,PATHSEPARATOR);
|
|
s1 = poolcat(prefix,PATHSEPARATOR);
|
|
result = poolcat(s1,sym->name);
|
|
return result;
|
|
#else
|
|
return nulldup(sym->name);
|
|
#endif
|
|
}
|
|
|
|
int
|
|
prefixeq(List* x1, List* x2)
|
|
{
|
|
Symbol** l1;
|
|
Symbol** l2;
|
|
int len,i;
|
|
if((len=listlength(x1)) != listlength(x2)) return 0;
|
|
l1=(Symbol**)listcontents(x1);
|
|
l2=(Symbol**)listcontents(x2);
|
|
for(i=0;i<len;i++) {
|
|
if(strcmp(l1[i]->name,l2[i]->name) != 0) return 0;
|
|
}
|
|
return 1;
|
|
}
|
|
|
|
List*
|
|
prefixdup(List* prefix)
|
|
{
|
|
List* dupseq;
|
|
int i;
|
|
if(prefix == NULL) return listnew();
|
|
dupseq = listnew();
|
|
listsetalloc(dupseq,listlength(prefix));
|
|
for(i=0;i<listlength(prefix);i++) listpush(dupseq,listget(prefix,i));
|
|
return dupseq;
|
|
}
|
|
|
|
/*
|
|
Many of the generate routines need to construct
|
|
heap strings for short periods. Remembering to
|
|
free such space is error prone, so provide a
|
|
pseudo-GC to handle these short term requests.
|
|
The idea is to have a fixed size pool
|
|
tracking malloc requests and automatically
|
|
releasing when the pool gets full.
|
|
*/
|
|
|
|
/* Max number of allocated pool items*/
|
|
#define POOLMAX 100
|
|
|
|
static char* pool[POOLMAX];
|
|
static int poolindex = -1;
|
|
#define POOL_DEFAULT 256
|
|
|
|
char*
|
|
poolalloc(size_t length)
|
|
{
|
|
if(poolindex == -1) { /* initialize*/
|
|
memset((void*)pool,0,sizeof(pool));
|
|
poolindex = 0;
|
|
}
|
|
if(poolindex == POOLMAX) poolindex=0;
|
|
if(length == 0) length = POOL_DEFAULT;
|
|
if(pool[poolindex] != NULL) efree(pool[poolindex]);
|
|
pool[poolindex] = (char*)ecalloc(length);
|
|
return pool[poolindex++];
|
|
}
|
|
|
|
char*
|
|
pooldup(const char* s)
|
|
{
|
|
char* sdup = poolalloc(strlen(s)+1);
|
|
strncpy(sdup,s,(strlen(s)+1));
|
|
return sdup;
|
|
}
|
|
|
|
char*
|
|
poolcat(const char* s1, const char* s2)
|
|
{
|
|
int len1, len2;
|
|
char* cat;
|
|
if(s1 == NULL && s2 == NULL) return NULL;
|
|
len1 = (s1?strlen(s1):0);
|
|
len2 = (s2?strlen(s2):0);
|
|
cat = poolalloc(len1+len2+1);
|
|
cat[0] = '\0';
|
|
if(s1 != NULL) strcat(cat,s1);
|
|
if(s2 != NULL) strcat(cat,s2);
|
|
return cat;
|
|
}
|
|
|
|
/* Result is malloc'd*/
|
|
unsigned char*
|
|
makebytestring(char* s, size_t* lenp)
|
|
{
|
|
unsigned char* bytes;
|
|
unsigned char* b;
|
|
size_t slen = strlen(s); /* # nibbles */
|
|
size_t blen = slen/2; /* # bytes */
|
|
int i;
|
|
|
|
ASSERT((slen%2) == 0);
|
|
ASSERT(blen > 0);
|
|
bytes = (unsigned char*)ecalloc(blen);
|
|
b = bytes;
|
|
for(i=0;i<slen;i+=2) {
|
|
unsigned int digit1 = chartohex(*s++);
|
|
unsigned int digit2 = chartohex(*s++);
|
|
unsigned int byte = (digit1 << 4) | digit2;
|
|
*b++ = byte;
|
|
}
|
|
if(lenp) *lenp = blen;
|
|
return bytes;
|
|
}
|
|
|
|
int
|
|
getpadding(int offset, int alignment)
|
|
{
|
|
int rem = (alignment==0?0:(offset % alignment));
|
|
int pad = (rem==0?0:(alignment - rem));
|
|
return pad;
|
|
}
|
|
|
|
static void
|
|
reclaimSymbols(void)
|
|
{
|
|
int i;
|
|
for(i=0;i<listlength(symlist);i++) {
|
|
Symbol* sym = listget(symlist,i);
|
|
freeSymbol(sym);
|
|
}
|
|
}
|
|
|
|
void
|
|
cleanup()
|
|
{
|
|
reclaimSymbols();
|
|
listfree(symlist);
|
|
listfree(grpdefs);
|
|
listfree(dimdefs);
|
|
listfree(attdefs);
|
|
listfree(gattdefs);
|
|
listfree(xattdefs);
|
|
listfree(typdefs);
|
|
listfree(vardefs);
|
|
filldatalist->readonly = 0;
|
|
freedatalist(filldatalist);
|
|
}
|
|
|
|
/* compute the total n-dimensional size as 1 long array;
|
|
if stop == 0, then stop = dimset->ndims.
|
|
*/
|
|
size_t
|
|
crossproduct(Dimset* dimset, int start, int stop)
|
|
{
|
|
size_t totalsize = 1;
|
|
int i;
|
|
for(i=start;i<stop;i++) {
|
|
totalsize = totalsize * dimset->dimsyms[i]->dim.declsize;
|
|
}
|
|
return totalsize;
|
|
}
|
|
|
|
/* Do the "complement" of crossproduct;
|
|
compute the total n-dimensional size of an array
|
|
starting at 0 thru the 'last' array index.
|
|
stop if we encounter an unlimited dimension
|
|
*/
|
|
size_t
|
|
prefixarraylength(Dimset* dimset, int last)
|
|
{
|
|
return crossproduct(dimset,0,last+1);
|
|
}
|
|
|
|
|
|
|
|
#ifdef USE_HDF5
|
|
extern int H5Eprint1(FILE * stream);
|
|
#endif
|
|
|
|
void
|
|
check_err(const int stat, const int line, const char* file, const char* func)
|
|
{
|
|
check_err2(stat,-1,line,file,func);
|
|
}
|
|
|
|
void check_err2(const int stat, const int cdlline, const int line, const char* file, const char* func)
|
|
{
|
|
if (stat != NC_NOERR) {
|
|
if(cdlline >= 0)
|
|
fprintf(stderr, "ncgen: cdl line %d; %s\n", cdlline, nc_strerror(stat));
|
|
else
|
|
fprintf(stderr, "ncgen: %s\n", nc_strerror(stat));
|
|
fprintf(stderr, "\t(%s:%s:%d)\n", file,func,line);
|
|
#ifdef USE_HDF5
|
|
H5Eprint1(stderr);
|
|
#endif
|
|
fflush(stderr);
|
|
finalize_netcdf(1);
|
|
}
|
|
}
|
|
|
|
/**
|
|
Find the index of the first unlimited
|
|
dimension at or after 'start'.
|
|
If no unlimited exists, return |dimset|
|
|
*/
|
|
int
|
|
findunlimited(Dimset* dimset, int start)
|
|
{
|
|
for(;start<dimset->ndims;start++) {
|
|
if(dimset->dimsyms[start]->dim.isunlimited)
|
|
return start;
|
|
}
|
|
return dimset->ndims;
|
|
}
|
|
|
|
/**
|
|
Find the index of the last unlimited
|
|
dimension.
|
|
If no unlimited exists, return |dimset|
|
|
*/
|
|
int
|
|
findlastunlimited(Dimset* dimset)
|
|
{
|
|
int i;
|
|
for(i=dimset->ndims-1;i>=0;i--) {
|
|
if(dimset->dimsyms[i]->dim.isunlimited)
|
|
return i;
|
|
}
|
|
return dimset->ndims;
|
|
}
|
|
|
|
/**
|
|
Count the number of unlimited dimensions.
|
|
*/
|
|
int
|
|
countunlimited(Dimset* dimset)
|
|
{
|
|
int i, count;
|
|
for(count=0,i=dimset->ndims-1;i>=0;i--) {
|
|
if(dimset->dimsyms[i]->dim.isunlimited)
|
|
count++;
|
|
}
|
|
return count;
|
|
}
|
|
|
|
/* Return standard format string */
|
|
const char *
|
|
kind_string(int kind)
|
|
{
|
|
switch (kind) {
|
|
case 1: return "classic";
|
|
case 2: return "64-bit offset";
|
|
case 3: return "netCDF-4";
|
|
case 4: return "netCDF-4 classic model";
|
|
default:
|
|
derror("Unknown format index: %d\n",kind);
|
|
}
|
|
return NULL;
|
|
}
|
|
|