netcdf-c/ncgen/getfill.c
Dennis Heimbigner 68a98f6e81 Fix ncgen handling of big data sections
The current ncgen does not properly handle very large
data sections. Apparently this is very uncommon because
it was only discovered in testing the new zarr code.

The fix required a new approach to processing data sections.
Unfortunately, the resulting ncgen is slower than before
but at least it is, I think, now correct.

The added test cases are in libnczarr, and so will
not show up until that is incorporated into master.

Note also that fortran code generation changed, but
has not been tested here.

Misc. Changes
1. Cleanup error handling in ncgen -lc and -lb output
2. Cleanup Makefiles for ncgen to remove unused code
3. Added a program, ncgen/ncdumpchunks, to print
   the data for a .nc file on a per-chunk format.
4. Made the XGetOpt change in PR https://github.com/Unidata/netcdf-c/pull/1694
   for ncdump/ncvalidator
2020-05-14 11:20:46 -06:00

257 lines
8.1 KiB
C

/*********************************************************************
* Copyright 2018, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
* $Header: /upc/share/CVS/netcdf-3/ncgen/getfill.c,v 1.8 2010/04/14 22:04:56 dmh Exp $
*********************************************************************/
#include "includes.h"
#include "dump.h"
/* mnemonic*/
#define TOPLEVEL 1
/*Forward*/
static void fill(Symbol* tsym, Datalist*);
static void fillarray(Symbol* tsym, Dimset* dimset, int index, Datalist*);
static void filllist(Symbol* tvsym, Datalist* dl);
/* Construct a Datalist representing a complete fill value.
for a specified variable or type. Cache if needed later.
The rules are as follows
1. If the tvsym argument is a variable and it has a _FillValue
attribute, then use that value.
2. If the tvsym argunment is a variable with no specified
_FillValue, then create one based on the variable's basetype.
3. If the tvsym argument is a type, then if it already has a fill value,
then use that, otherwise build and cache a fillvalue appropriate
for that type.
*/
Datalist*
getfiller(Symbol* tvsym)
{
Datalist* filler = NULL;
ASSERT(tvsym->objectclass == NC_VAR || tvsym->objectclass == NC_TYPE);
if(tvsym->objectclass == NC_VAR) {
if(tvsym->var.special._Fillvalue != NULL) {
/* We have a _FillValue Attribute specified */
filler = tvsym->var.special._Fillvalue;
} else { /* otherwise create a fillvalue for the base type */
filler = getfiller(tvsym->typ.basetype);
}
} else { /* (tvsym->objectclass == NC_TYPE) */
if(tvsym->typ._Fillvalue == NULL) {
/* create and cache */
filler = builddatalist(0);
fill(tvsym,filler);
tvsym->typ._Fillvalue = filler;
}
filler = tvsym->typ._Fillvalue;
}
#ifdef GENDEBUG2
dumpdatalist(filler,"getfiller");
#endif
return filler;
}
static void
fill(Symbol* tsym, Datalist* filler)
{
unsigned long i;
NCConstant* con = NULL;
ASSERT(tsym->objectclass == NC_TYPE);
switch (tsym->subclass) {
case NC_ENUM: case NC_OPAQUE: case NC_PRIM:
con = nullconst();
con->nctype = tsym->typ.typecode;
nc_getfill(con,tsym);
dlappend(filler,con);
break;
case NC_COMPOUND: {
/* Given a compound type, the fill will be a sublist
consisting itself of N constants, where N is the number of fields.
Non-array fields will be direct, array fields will be sublists.
*/
Datalist* cmpdlist = builddatalist(listlength(tsym->subnodes)); /* list of field constants */
for(i=0;i<listlength(tsym->subnodes);i++) {
NCConstant* fieldinstance = NULL;
Symbol* field = (Symbol*)listget(tsym->subnodes,i);
if(field->typ.dimset.ndims > 0) {
/* Build a sublist for this field */
Datalist* arraydata = builddatalist(0);
fillarray(field->typ.basetype,&field->typ.dimset,0,arraydata);
/* Convert to a compound constant */
fieldinstance = list2const(arraydata);
dlappend(cmpdlist,fieldinstance);
fieldinstance = NULL;
} else
/* Append directly to cmpdlist*/
filllist(field->typ.basetype,cmpdlist);
}
/* Add compound instance to the filler list */
con = list2const(cmpdlist);
dlappend(filler,con);
con = NULL;
} break;
case NC_VLEN: {
Datalist* vlensublist = NULL;
/* The vlist will have a sublist hanging off of fille, with
a single compound constant in filler */
vlensublist = builddatalist(0);
filllist(tsym->typ.basetype,vlensublist); /* generate a single instance*/
con = builddatasublist(vlensublist);
dlappend(filler,con);
} break;
default: PANIC1("fill: unexpected subclass %d",tsym->subclass);
}
}
static void
filllist(Symbol* tsym, Datalist* dl)
{
int i;
Datalist* sublist;
NCConstant* con = NULL;
ASSERT(tsym->objectclass == NC_TYPE);
switch (tsym->subclass) {
case NC_ENUM: case NC_OPAQUE: case NC_PRIM:
con = nullconst();
con->nctype = tsym->typ.typecode;
nc_getfill(con,tsym);
dlappend(dl,con);
break;
case NC_COMPOUND:
sublist = builddatalist(listlength(tsym->subnodes));
for(i=0;i<listlength(tsym->subnodes);i++) {
Symbol* field = (Symbol*)listget(tsym->subnodes,i);
filllist(field->typ.basetype,sublist);
}
con = builddatasublist(sublist);
dlappend(dl,con);
break;
case NC_VLEN:
sublist = builddatalist(0);
filllist(tsym->typ.basetype,sublist); /* generate a single instance*/
con = builddatasublist(sublist);
dlappend(dl,con);
break;
default: PANIC1("fill: unexpected subclass %d",tsym->subclass);
}
}
/* Create an array of fill values of basetype given the dimset. This
is recursive over the dimensions as specified by the index argumen
*/
static void
fillarray(Symbol* basetype, Dimset* dimset, int index, Datalist* arraylist)
{
int i;
Symbol* dim = dimset->dimsyms[index];
unsigned int size = dim->dim.declsize;
int isunlimited = (size == 0);
int lastdim = (index == (dimset->ndims - 1));
if(isunlimited) {
/* do a single entry to satisfy*/
if(lastdim) {
filllist(basetype,arraylist);
} else {
fillarray(basetype->typ.basetype,dimset,index+1,arraylist);
}
} else { /* bounded*/
if(lastdim) {
for(i=0;i<size;i++) filllist(basetype,arraylist);
} else {
for(i=0;i<size;i++) {
fillarray(basetype->typ.basetype,dimset,index+1,arraylist);
}
}
}
}
/*
* Given primitive netCDF type, return a default fill_value appropriate for
* that type.
*/
void
nc_getfill(NCConstant* value, Symbol* tsym)
{
switch(value->nctype) {
case NC_CHAR: value->value.charv = NC_FILL_CHAR; break;
case NC_BYTE: value->value.int8v = NC_FILL_BYTE; break;
case NC_SHORT: value->value.int16v = NC_FILL_SHORT; break;
case NC_INT: value->value.int32v = NC_FILL_INT; break;
case NC_FLOAT: value->value.floatv = NC_FILL_FLOAT; break;
case NC_DOUBLE: value->value.doublev = NC_FILL_DOUBLE; break;
case NC_UBYTE: value->value.uint8v = NC_FILL_UBYTE; break;
case NC_USHORT: value->value.uint16v = NC_FILL_USHORT; break;
case NC_UINT: value->value.uint32v = NC_FILL_UINT; break;
case NC_INT64: value->value.int64v = NC_FILL_INT64; break;
case NC_UINT64: value->value.uint64v = NC_FILL_UINT64; break;
case NC_STRING:
value->value.stringv.stringv = nulldup(NC_FILL_STRING);
value->value.stringv.len = (int)strlen(NC_FILL_STRING);
/* Exception: if string is null, then make it's length be 1 */
if(value->value.stringv.len == 0)
value->value.stringv.len = 1;
break;
case NC_OPAQUE:
value->value.opaquev.len = 2;
value->value.opaquev.stringv = nulldup("00");
break;
case NC_ENUM: {
Symbol* econst;
NCConstant* eccon;
if(tsym == NULL)
derror("nc_getfill: no enum type specified");
/* Get the first value */
if(tsym->subclass != NC_ENUM)
derror("nc_getfill: expected enum type");
if(listlength(tsym->subnodes) == 0)
derror("nc_getfill: empty enum type");
econst = listget(tsym->subnodes,0);
eccon = econst->typ.econst;
switch (eccon->nctype) {
case NC_BYTE:
case NC_SHORT:
case NC_INT:
case NC_UBYTE:
case NC_USHORT:
case NC_UINT:
case NC_INT64:
case NC_UINT64:
value->value = eccon->value;
break;
default:
derror("nc_getfill: illegal enum basetype");
}
} break;
default:
derror("nc_getfill: unrecognized type: %d",value->nctype);
}
}
char*
nc_dfaltfillname(nc_type nctype)
{
switch (nctype) {
case NC_BYTE: return "NC_FILL_BYTE";
case NC_CHAR: return "NC_FILL_CHAR";
case NC_SHORT: return "NC_FILL_SHORT";
case NC_INT: return "NC_FILL_INT";
case NC_FLOAT: return "NC_FILL_FLOAT";
case NC_DOUBLE: return "NC_FILL_DOUBLE";
case NC_UBYTE: return "NC_FILL_UBYTE";
case NC_USHORT: return "NC_FILL_USHORT";
case NC_UINT: return "NC_FILL_UINT";
case NC_INT64: return "NC_FILL_INT64";
case NC_UINT64: return "NC_FILL_UINT64";
case NC_STRING: return "NC_FILL_STRING";
default: PANIC("unexpected default fill name");
}
return NULL;
}