mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-12-15 08:30:11 +08:00
68a98f6e81
The current ncgen does not properly handle very large data sections. Apparently this is very uncommon because it was only discovered in testing the new zarr code. The fix required a new approach to processing data sections. Unfortunately, the resulting ncgen is slower than before but at least it is, I think, now correct. The added test cases are in libnczarr, and so will not show up until that is incorporated into master. Note also that fortran code generation changed, but has not been tested here. Misc. Changes 1. Cleanup error handling in ncgen -lc and -lb output 2. Cleanup Makefiles for ncgen to remove unused code 3. Added a program, ncgen/ncdumpchunks, to print the data for a .nc file on a per-chunk format. 4. Made the XGetOpt change in PR https://github.com/Unidata/netcdf-c/pull/1694 for ncdump/ncvalidator
802 lines
17 KiB
C
802 lines
17 KiB
C
/*********************************************************************
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* Copyright 2018, UCAR/Unidata
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* See netcdf/COPYRIGHT file for copying and redistribution conditions.
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*********************************************************************/
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/* $Id: data.c,v 1.7 2010/05/24 19:59:56 dmh Exp $ */
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/* $Header: /upc/share/CVS/netcdf-3/ncgen/data.c,v 1.7 2010/05/24 19:59:56 dmh Exp $ */
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#include "includes.h"
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#include "ncoffsets.h"
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#include "netcdf_aux.h"
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#include "dump.h"
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#undef VERIFY
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#define XVSNPRINTF vsnprintf
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/*
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#define XVSNPRINTF lvsnprintf
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extern int lvsnprintf(char*, size_t, const char*, va_list);
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*/
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#define DATALISTINIT 32
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/* Track all known datalist*/
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List* alldatalists = NULL;
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NCConstant nullconstant;
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NCConstant fillconstant;
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Datalist* filldatalist;
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Bytebuffer* codebuffer;
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Bytebuffer* codetmp;
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Bytebuffer* stmt;
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/* Forward */
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static void setconstlist(NCConstant* con, Datalist* dl);
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#ifdef VERIFY
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/* index of match */
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static int
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verify(List* all, Datalist* dl)
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{
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int i;
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for(i=0;i<listlength(all);i++) {
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void* pi = listget(all,i);
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if(pi == dl)
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return i;
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}
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return -1;
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}
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#endif
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/**************************************************/
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/**************************************************/
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NCConstant*
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nullconst(void)
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{
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NCConstant* n = ecalloc(sizeof(NCConstant));
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return n;
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}
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int
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isstringable(nc_type nctype)
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{
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switch (nctype) {
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case NC_CHAR: case NC_STRING:
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case NC_BYTE: case NC_UBYTE:
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case NC_FILLVALUE:
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return 1;
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default: break;
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}
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return 0;
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}
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NCConstant*
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list2const(Datalist* list)
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{
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NCConstant* con = nullconst();
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ASSERT(list != NULL);
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con->nctype = NC_COMPOUND;
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if(!list->readonly) con->lineno = list->data[0]->lineno;
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setconstlist(con,list);
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con->filled = 0;
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return con;
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}
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Datalist*
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const2list(NCConstant* con)
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{
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Datalist* list;
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ASSERT(con != NULL);
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list = builddatalist(1);
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if(list != NULL) {
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dlappend(list,con);
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}
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return list;
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}
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/**************************************************/
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#ifdef GENDEBUG
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void
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report(char* lead, Datalist* list)
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{
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extern void bufdump(Datalist*,Bytebuffer*);
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Bytebuffer* buf = bbNew();
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bufdump(list,buf);
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fprintf(stderr,"\n%s::%s\n",lead,bbContents(buf));
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fflush(stderr);
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bbFree(buf);
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}
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#endif
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/**************************************************/
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static void
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setconstlist(NCConstant* con, Datalist* dl)
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{
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#ifdef VERIFY
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int pos = verify(alldatalists,dl);
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if(pos >= 0) {
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dumpdatalist(listget(alldatalists,pos),"XXX");
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}
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#endif
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con->value.compoundv = dl;
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}
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/* Deep constant cloning; return struct not pointer to struct*/
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NCConstant*
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cloneconstant(NCConstant* con)
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{
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NCConstant* newcon = NULL;
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Datalist* newdl = NULL;
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char* s = NULL;
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newcon = nullconst();
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if(newcon == NULL) return newcon;
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*newcon = *con;
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switch (newcon->nctype) {
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case NC_STRING:
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if(newcon->value.stringv.len == 0)
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s = NULL;
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else {
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s = (char*)ecalloc(newcon->value.stringv.len+1);
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if(newcon->value.stringv.len > 0)
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memcpy(s,newcon->value.stringv.stringv,newcon->value.stringv.len);
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s[newcon->value.stringv.len] = '\0';
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}
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newcon->value.stringv.stringv = s;
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break;
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case NC_OPAQUE:
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s = (char*)ecalloc(newcon->value.opaquev.len+1);
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if(newcon->value.opaquev.len > 0)
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memcpy(s,newcon->value.opaquev.stringv,newcon->value.opaquev.len);
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s[newcon->value.opaquev.len] = '\0';
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newcon->value.opaquev.stringv = s;
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break;
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case NC_COMPOUND:
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newdl = clonedatalist(con->value.compoundv);
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setconstlist(newcon,newdl);
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break;
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default: break;
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}
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return newcon;
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}
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/* Deep constant clear*/
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void
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clearconstant(NCConstant* con)
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{
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if(con == NULL) return;
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switch (con->nctype) {
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case NC_STRING:
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if(con->value.stringv.stringv != NULL)
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efree(con->value.stringv.stringv);
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break;
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case NC_OPAQUE:
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if(con->value.opaquev.stringv != NULL)
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efree(con->value.opaquev.stringv);
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break;
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case NC_COMPOUND:
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con->value.compoundv = NULL;
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break;
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default: break;
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}
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memset((void*)con,0,sizeof(NCConstant));
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}
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void
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freeconstant(NCConstant* con, int shallow)
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{
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if(!shallow) clearconstant(con);
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nullfree(con);
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}
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/**************************************************/
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int
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datalistline(Datalist* ds)
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{
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if(ds == NULL || ds->length == 0) return 0;
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return ds->data[0]->lineno;
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}
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/* Go thru a databuf of possibly nested constants
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and insert commas as needed; ideally, this
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operation should be idempotent so that
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the caller need not worry about it having already
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been applied. Also, handle situation where there may be missing
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matching right braces.
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*/
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static char* commifyr(char* p, Bytebuffer* buf);
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static char* wordstring(char* p, Bytebuffer* buf, int quote);
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void
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commify(Bytebuffer* buf)
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{
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char* list,*p;
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if(bbLength(buf) == 0) return;
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list = bbDup(buf);
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p = list;
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bbClear(buf);
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commifyr(p,buf);
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bbNull(buf);
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efree(list);
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}
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/* Requires that the string be balanced
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WRT to braces
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*/
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static char*
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commifyr(char* p, Bytebuffer* buf)
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{
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int comma = 0;
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int c;
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while((c=*p++)) {
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if(c == ' ') continue;
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if(c == ',') continue;
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else if(c == '}') {
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break;
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}
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if(comma) bbCat(buf,", "); else comma=1;
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if(c == '{') {
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bbAppend(buf,'{');
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p = commifyr(p,buf);
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bbAppend(buf,'}');
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} else if(c == '\'' || c == '\"') {
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p = wordstring(p,buf,c);
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} else {
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bbAppend(buf,c);
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p=word(p,buf);
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}
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}
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return p;
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}
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char*
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word(char* p, Bytebuffer* buf)
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{
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int c;
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while((c=*p++)) {
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if(c == '}' || c == ' ' || c == ',') break;
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if(c == '\\') {
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bbAppend(buf,c);
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c=*p++;
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if(!c) break;
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}
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bbAppend(buf,(char)c);
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}
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p--; /* leave terminator for parent */
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return p;
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}
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static char*
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wordstring(char* p, Bytebuffer* buf, int quote)
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{
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int c;
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bbAppend(buf,quote);
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while((c=*p++)) {
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if(c == '\\') {
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bbAppend(buf,c);
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c = *p++;
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if(c == '\0') return --p;
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} else if(c == quote) {
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bbAppend(buf,c);
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return p;
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}
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bbAppend(buf,c);
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}
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return p;
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}
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static const char zeros[] =
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"\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0";
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void
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alignbuffer(NCConstant* prim, Bytebuffer* buf)
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{
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int alignment,pad,offset;
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ASSERT(prim->nctype != NC_COMPOUND);
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if(prim->nctype == NC_ECONST)
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alignment = ncaux_class_alignment(prim->value.enumv->typ.typecode);
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else if(usingclassic && prim->nctype == NC_STRING)
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alignment = ncaux_class_alignment(NC_CHAR);
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else if(prim->nctype == NC_CHAR)
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alignment = ncaux_class_alignment(NC_CHAR);
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else
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alignment = ncaux_class_alignment(prim->nctype);
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offset = bbLength(buf);
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pad = getpadding(offset,alignment);
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if(pad > 0) {
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bbAppendn(buf,(void*)zeros,pad);
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}
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}
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/*
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Following routines are in support of language-oriented output
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*/
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void
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codedump(Bytebuffer* buf)
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{
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bbCatbuf(codebuffer,buf);
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bbClear(buf);
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}
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void
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codepartial(const char* txt)
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{
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bbCat(codebuffer,txt);
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}
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void
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codeline(const char* line)
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{
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codepartial(line);
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codepartial("\n");
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}
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void
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codelined(int n, const char* txt)
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{
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bbindent(codebuffer,n);
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bbCat(codebuffer,txt);
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codepartial("\n");
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}
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void
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codeflush(void)
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{
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if(bbLength(codebuffer) > 0) {
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bbNull(codebuffer);
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fputs(bbContents(codebuffer),stdout);
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fflush(stdout);
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bbClear(codebuffer);
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}
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}
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void
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bbindent(Bytebuffer* buf, const int n)
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{
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bbCat(buf,indented(n));
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}
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/* Provide an restrict snprintf that writes to an expandable buffer */
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/* Simulates a simple snprintf because apparently
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the IRIX one is broken wrt return value.
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Supports only %u %d %f %s and %% specifiers
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with optional leading hh or ll.
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*/
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static void
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vbbprintf(Bytebuffer* buf, const char* fmt, va_list argv)
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{
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char tmp[128];
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const char* p;
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int c;
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int hcount;
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int lcount;
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char* text;
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for(p=fmt;(c=*p++);) {
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hcount = 0; lcount = 0;
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switch (c) {
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case '%':
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retry: switch ((c=*p++)) {
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case '\0': bbAppend(buf,'%'); p--; break;
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case '%': bbAppend(buf,c); break;
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case 'h':
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hcount++;
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while((c=*p) && (c == 'h')) {hcount++; p++;}
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if(hcount > 2) hcount = 2;
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goto retry;
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case 'l':
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lcount++;
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while((c=*p) && (c == 'l')) {
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lcount++;
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p++;
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}
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if(lcount > 2) lcount = 2;
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goto retry;
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case 'u':
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if(hcount == 2) {
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snprintf(tmp,sizeof(tmp),"%hhu",
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(unsigned char)va_arg(argv,unsigned int));
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} else if(hcount == 1) {
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snprintf(tmp,sizeof(tmp),"%hu",
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(unsigned short)va_arg(argv,unsigned int));
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} else if(lcount == 2) {
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snprintf(tmp,sizeof(tmp),"%llu",
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(unsigned long long)va_arg(argv,unsigned long long));
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} else if(lcount == 1) {
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snprintf(tmp,sizeof(tmp),"%lu",
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(unsigned long)va_arg(argv,unsigned long));
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} else {
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snprintf(tmp,sizeof(tmp),"%u",
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(unsigned int)va_arg(argv,unsigned int));
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}
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bbCat(buf,tmp);
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break;
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case 'd':
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if(hcount == 2) {
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snprintf(tmp,sizeof(tmp),"%hhd",
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(signed char)va_arg(argv,signed int));
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} else if(hcount == 1) {
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snprintf(tmp,sizeof(tmp),"%hd",
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(signed short)va_arg(argv,signed int));
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} else if(lcount == 2) {
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snprintf(tmp,sizeof(tmp),"%lld",
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(signed long long)va_arg(argv,signed long long));
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} else if(lcount == 1) {
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snprintf(tmp,sizeof(tmp),"%ld",
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(signed long)va_arg(argv,signed long));
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} else {
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snprintf(tmp,sizeof(tmp),"%d",
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(signed int)va_arg(argv,signed int));
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}
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bbCat(buf,tmp);
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break;
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case 'f':
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if(lcount > 0) {
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snprintf(tmp,sizeof(tmp),"((double)%.16g)",
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(double)va_arg(argv,double));
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} else {
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snprintf(tmp,sizeof(tmp),"((float)%.8g)",
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(double)va_arg(argv,double));
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}
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bbCat(buf,tmp);
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break;
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case 's':
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text = va_arg(argv,char*);
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bbCat(buf,text);
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break;
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case 'c':
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c = va_arg(argv,int);
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bbAppend(buf,(char)c);
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break;
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default:
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PANIC1("vbbprintf: unknown specifier: %c",(char)c);
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}
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break;
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default:
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bbAppend(buf,c);
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}
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}
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}
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void
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bbprintf(Bytebuffer* buf, const char *fmt, ...)
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{
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va_list argv;
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va_start(argv,fmt);
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vbbprintf(buf,fmt,argv);
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va_end(argv);
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}
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void
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bbprintf0(Bytebuffer* buf, const char *fmt, ...)
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{
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va_list argv;
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va_start(argv,fmt);
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bbClear(buf);
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vbbprintf(buf,fmt,argv);
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va_end(argv);
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}
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void
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codeprintf(const char *fmt, ...)
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{
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va_list argv;
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va_start(argv,fmt);
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vbbprintf(codebuffer,fmt,argv);
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va_end(argv);
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}
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NCConstant*
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emptycompoundconst(int lineno)
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{
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NCConstant* c = nullconst();
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c->lineno = lineno;
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c->nctype = NC_COMPOUND;
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setconstlist(c,builddatalist(0));
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c->filled = 0;
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return c;
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}
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/* Make an empty string constant*/
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NCConstant*
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emptystringconst(int lineno)
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{
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NCConstant* c = nullconst();
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ASSERT(c != NULL);
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c->lineno = lineno;
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c->nctype = NC_STRING;
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c->value.stringv.len = 0;
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c->value.stringv.stringv = NULL;
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c->filled = 0;
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return c;
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}
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#define INDENTMAX 256
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static char* dent = NULL;
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char*
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indented(int n)
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{
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char* indentation;
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if(dent == NULL) {
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dent = (char*)ecalloc(INDENTMAX+1);
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memset((void*)dent,' ',INDENTMAX);
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dent[INDENTMAX] = '\0';
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}
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if(n*4 >= INDENTMAX) n = INDENTMAX/4;
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indentation = dent+(INDENTMAX - 4*n);
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return indentation;
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}
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void
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dlsetalloc(Datalist* dl, size_t need)
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{
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NCConstant** newdata = NULL;
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if(dl->readonly) abort();
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if(dl->alloc < need) {
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newdata = (NCConstant**)ecalloc(need*sizeof(NCConstant*));
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if(dl->length > 0)
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memcpy(newdata,dl->data,sizeof(NCConstant*)*dl->length);
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dl->alloc = need;
|
|
nullfree(dl->data);
|
|
dl->data = newdata;
|
|
}
|
|
}
|
|
|
|
void
|
|
dlextend(Datalist* dl)
|
|
{
|
|
size_t newalloc;
|
|
if(dl->readonly) abort();
|
|
newalloc = (dl->alloc > 0?2*dl->alloc:2);
|
|
dlsetalloc(dl,newalloc);
|
|
}
|
|
|
|
|
|
void
|
|
capture(Datalist* dl)
|
|
{
|
|
if(alldatalists == NULL) alldatalists = listnew();
|
|
listpush(alldatalists,dl);
|
|
}
|
|
|
|
Datalist*
|
|
builddatalist(int initial)
|
|
{
|
|
Datalist* ci;
|
|
if(initial <= 0) initial = DATALISTINIT;
|
|
initial++; /* for header*/
|
|
ci = (Datalist*)ecalloc(sizeof(Datalist));
|
|
if(ci == NULL) semerror(0,"out of memory\n");
|
|
ci->data = (NCConstant**)ecalloc(sizeof(NCConstant*)*initial);
|
|
ci->alloc = initial;
|
|
ci->length = 0;
|
|
return ci;
|
|
}
|
|
|
|
void
|
|
dlappend(Datalist* dl, NCConstant* constant)
|
|
{
|
|
if(dl->readonly) abort();
|
|
if(dl->length >= dl->alloc)
|
|
dlextend(dl);
|
|
dl->data[dl->length++] = (constant);
|
|
}
|
|
|
|
void
|
|
dlset(Datalist* dl, size_t pos, NCConstant* constant)
|
|
{
|
|
ASSERT(pos < dl->length);
|
|
dl->data[pos] = (constant);
|
|
}
|
|
|
|
NCConstant*
|
|
dlremove(Datalist* dl, size_t pos)
|
|
{
|
|
int i;
|
|
NCConstant* con = NULL;
|
|
ASSERT(dl->length > 0 && pos < dl->length);
|
|
con = dl->data[pos];
|
|
for(i=pos+1;i<dl->length;i++)
|
|
dl->data[i-1] = dl->data[i];
|
|
dl->length--;
|
|
return con;
|
|
}
|
|
|
|
void
|
|
dlinsert(Datalist* dl, size_t pos, Datalist* insertion)
|
|
{
|
|
int i;
|
|
int len1 = datalistlen(dl);
|
|
int len2 = datalistlen(insertion);
|
|
int delta = len1 - pos;
|
|
dlsetalloc(dl,len2+len1+1);
|
|
|
|
|
|
/* move contents of dl up to make room for insertion */
|
|
if(delta > 0)
|
|
memmove(&dl->data[pos+len2],&dl->data[pos],delta*sizeof(NCConstant*));
|
|
dl->length += len2;
|
|
for(i=0;i<len2;i++) {
|
|
NCConstant* con = insertion->data[i];
|
|
con = cloneconstant(con);
|
|
dl->data[pos+i] = con;
|
|
}
|
|
}
|
|
|
|
/* Convert a datalist to a compound constant */
|
|
NCConstant*
|
|
builddatasublist(Datalist* dl)
|
|
{
|
|
|
|
NCConstant* d = nullconst();
|
|
d->nctype = NC_COMPOUND;
|
|
d->lineno = (dl->length > 0?dl->data[0]->lineno:0);
|
|
setconstlist(d,dl);
|
|
d->filled = 0;
|
|
return d;
|
|
|
|
}
|
|
|
|
/* Convert a subsequence of a datalist to its own datalist */
|
|
Datalist*
|
|
builddatasubset(Datalist* dl, size_t start, size_t count)
|
|
{
|
|
Datalist* subset;
|
|
|
|
if(dl == NULL || start >= datalistlen(dl)) return NULL;
|
|
if((start + count) > datalistlen(dl))
|
|
count = (datalistlen(dl) - start);
|
|
subset = (Datalist*)ecalloc(sizeof(Datalist));
|
|
subset->readonly = 1;
|
|
subset->length = count;
|
|
subset->alloc = count;
|
|
subset->data = &dl->data[start];
|
|
return subset;
|
|
}
|
|
|
|
/* Deep copy */
|
|
Datalist*
|
|
clonedatalist(Datalist* dl)
|
|
{
|
|
int i;
|
|
size_t len;
|
|
Datalist* newdl;
|
|
|
|
if(dl == NULL) return NULL;
|
|
len = datalistlen(dl);
|
|
newdl = builddatalist(len);
|
|
/* initialize */
|
|
for(i=0;i<len;i++) {
|
|
NCConstant* con = datalistith(dl,i);
|
|
con = cloneconstant(con);
|
|
dlappend(newdl,con);
|
|
}
|
|
return newdl;
|
|
}
|
|
|
|
|
|
/* recursive helpers */
|
|
|
|
void
|
|
reclaimconstant(NCConstant* con)
|
|
{
|
|
if(con == NULL) return;
|
|
switch (con->nctype) {
|
|
case NC_STRING:
|
|
if(con->value.stringv.stringv != NULL)
|
|
efree(con->value.stringv.stringv);
|
|
break;
|
|
case NC_OPAQUE:
|
|
if(con->value.opaquev.stringv != NULL)
|
|
efree(con->value.opaquev.stringv);
|
|
break;
|
|
case NC_COMPOUND:
|
|
#ifdef VERIFY
|
|
{int pos;
|
|
if((pos=verify(alldatalists,con->value.compoundv)) >= 0) {
|
|
dumpdatalist(listget(alldatalists,pos),"XXX");
|
|
abort();
|
|
}
|
|
}
|
|
#endif
|
|
reclaimdatalist(con->value.compoundv);
|
|
con->value.compoundv = NULL;
|
|
break;
|
|
default: break;
|
|
}
|
|
efree(con);
|
|
|
|
}
|
|
|
|
void
|
|
reclaimdatalist(Datalist* list)
|
|
{
|
|
int i;
|
|
if(list == NULL) return;
|
|
if(!list->readonly) {
|
|
if(list->data != NULL) {
|
|
for(i=0;i<list->length;i++) {
|
|
NCConstant* con = list->data[i];
|
|
if(con != NULL) reclaimconstant(con);
|
|
}
|
|
}
|
|
}
|
|
freedatalist(list);
|
|
}
|
|
|
|
/* Like reclaimdatalist, but do not try to reclaim contained constants */
|
|
void
|
|
freedatalist(Datalist* list)
|
|
{
|
|
if(list == NULL) return;
|
|
if(!list->readonly) {
|
|
efree(list->data);
|
|
list->data = NULL;
|
|
}
|
|
efree(list);
|
|
}
|
|
|
|
void
|
|
reclaimalldatalists(void)
|
|
{
|
|
int i;
|
|
for(i=0;i<listlength(alldatalists);i++) {
|
|
Datalist* di = listget(alldatalists,i);
|
|
if(di != NULL)
|
|
reclaimdatalist(di);
|
|
}
|
|
efree(alldatalists);
|
|
alldatalists = NULL;
|
|
}
|
|
|
|
static void
|
|
flattenR(Datalist* result, Datalist* data, int rank, int depth)
|
|
{
|
|
int i;
|
|
NCConstant* con;
|
|
|
|
if(rank == depth) return;
|
|
if(datalistlen(data) == 0) return;
|
|
for(i=0;i<datalistlen(data);i++) {
|
|
con = datalistith(data,i);
|
|
if(depth < rank - 1) {
|
|
/* Is this is a char list, then we might have short depth */
|
|
if(islistconst(con))
|
|
flattenR(result,compoundfor(con),rank,depth+1);
|
|
else
|
|
dlappend(result,con);
|
|
} else { /* depth == rank -1, last dimension */
|
|
dlappend(result,con);
|
|
}
|
|
}
|
|
}
|
|
|
|
/* Produce a new list that is the concat of all the leaf constants */
|
|
Datalist*
|
|
flatten(Datalist* list,int rank)
|
|
{
|
|
Datalist* result = builddatalist(0);
|
|
flattenR(result,list,rank,0);
|
|
return result;
|
|
}
|