netcdf-c/libdap2
Dennis Heimbigner fb40a72b45 Improve performance of the nc_reclaim_data and nc_copy_data functions.
re: Issue https://github.com/Unidata/netcdf-c/issues/2685
re: PR https://github.com/Unidata/netcdf-c/pull/2179

As noted in PR https://github.com/Unidata/netcdf-c/pull/2179,
the old code did not allow for reclaiming instances of types,
nor for properly copying them. That PR provided new functions
capable of reclaiming/copying instances of arbitrary types.

However, as noted by Issue https://github.com/Unidata/netcdf-c/issues/2685, using these
most general functions resulted in a significant performance
degradation, even for common cases.

This PR attempts to mitigate the cost of using the general
reclaim/copy functions in two ways.

First, the previous functions operating at the top level by
using ncid and typeid arguments. These functions were augmented
with equivalent versions that used the netcdf-c library internal
data structures to allow direct access to needed information.
These new functions are used internally to the library.

The second mitigation involves optimizing the internal functions
by providing early tests for common cases. This avoids
unnecessary recursive function calls.

The overall result is a significant improvement in speed by a
factor of roughly twenty -- your mileage may vary. These
optimized functions are still not as fast as the original (more
limited) functions, but they are getting close. Additional optimizations are
possible. But the cost is a significant "uglification" of the
code that I deemed a step too far, at least for now.

## Misc. Changes
1. Added a test case to check the proper reclamation/copy of complex types.
2. Found and fixed some places where nc_reclaim/copy should have been used.
3. Replaced, in the netcdf-c library, (almost all) occurrences of nc_reclaim_copy with calls to NC_reclaim/copy. This plus the optimizations is the primary speed-up mechanism.
4. In DAP4, the metadata is held in a substrate in-memory file; this required some changes so that the reclaim/copy code accessed that substrate dispatcher rather than the DAP4 dispatcher.
5. Re-factored and isolated the code that computes if a type is (transitively) variable-sized or not.
6. Clean up the reclamation code in ncgen; adding the use of nc_reclaim exposed some memory problems.
2023-05-20 17:11:25 -06:00
..
obsolete Thread safety: step 1: cleanup 2019-03-30 14:06:20 -06:00
cache.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
cdf.c Re-enable DAP2 authorization tests 2021-05-29 21:30:33 -06:00
CMakeLists.txt Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
common.c Thread safety: step 1: cleanup 2019-03-30 14:06:20 -06:00
constraints.c parse projection functions 2020-06-15 15:20:24 -04:00
constraints.h Updated COPYRIGHT stanza in libdap2 2018-12-06 14:21:03 -07:00
cvt 2011-04-17 18:56:10 +00:00
dapattr.c Re-enable DAP2 authorization tests 2021-05-29 21:30:33 -06:00
dapcvt.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
dapdebug.c Thread safety: step 1: cleanup 2019-03-30 14:06:20 -06:00
dapdebug.h Fix URL encoding in DAP2 url processing 2020-09-08 12:41:12 -06:00
dapdump.c Support MSYS2/Mingw platform 2021-12-23 22:18:56 -07:00
dapdump.h Updated COPYRIGHT stanza in libdap2 2018-12-06 14:21:03 -07:00
dapincludes.h Unify definition of NC_DISPATCH_VERSION 2021-01-31 21:40:08 -07:00
dapnc.h Updated COPYRIGHT stanza in libdap2 2018-12-06 14:21:03 -07:00
dapodom.c Spelling fixes 2019-09-18 08:03:01 -06:00
dapodom.h Updated COPYRIGHT stanza in libdap2 2018-12-06 14:21:03 -07:00
daputil.c Fix duplicate BOOL definitions 2021-02-02 22:48:22 -07:00
daputil.h Yet another fix for DAP2 double URL encoding. 2020-11-05 11:04:56 -07:00
dce.y Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
dceconstraints.c Explicitly disallow variable length type compression 2022-02-19 16:47:31 -07:00
dceconstraints.h Spelling fixes 2019-09-18 08:03:01 -06:00
dcelex.c Thread safety: step 1: cleanup 2019-03-30 14:06:20 -06:00
dceparse.c Updated COPYRIGHT stanza in libdap2 2018-12-06 14:21:03 -07:00
dceparselex.h windows: detect Windows using the correct define name 2019-11-07 07:55:47 -05:00
dcetab.c Fix various problem around VLEN's 2022-01-08 18:30:00 -07:00
dcetab.h Fix various problem around VLEN's 2022-01-08 18:30:00 -07:00
env ckp 2017-03-11 15:20:20 -07:00
getvara.c Fix JSON quoted string processing in libnczarr 2021-05-06 16:39:44 -06:00
getvara.h Updated COPYRIGHT stanza in libdap2 2018-12-06 14:21:03 -07:00
main.c ocdebug 2020-05-14 14:44:48 -06:00
Makefile.am Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
nccommon.h Fix duplicate BOOL definitions 2021-02-02 22:48:22 -07:00
ncd2dispatch.c Improve performance of the nc_reclaim_data and nc_copy_data functions. 2023-05-20 17:11:25 -06:00
ncd2dispatch.h final removal 2019-08-15 07:05:10 -06:00
ncdap.c Updated COPYRIGHT stanza in libdap2 2018-12-06 14:21:03 -07:00
ncdapa.c Updated COPYRIGHT stanza in libdap2 2018-12-06 14:21:03 -07:00
ncdaperr.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
test1.sh move from oc1.0 to oc2.0; create new dir oc2 2012-07-31 20:34:13 +00:00
todo completely rewritten constraint system 2011-11-14 04:20:19 +00:00
translation.html 2011-04-17 18:56:10 +00:00