netcdf-c/nczarr_test/run_nczarr_fill.sh
Dennis Heimbigner 49737888ca Improve S3 Documentation and Support
## Improvements to S3 Documentation
* Create a new document *quickstart_paths.md* that give a summary of the legal path formats used by netcdf-c. This includes both file paths and URL paths.
* Modify *nczarr.md* to remove most of the S3 related text.
* Move the S3 text from *nczarr.md* to a new document *cloud.md*.
* Add some S3-related text to the *byterange.md* document.

Hopefully, this will make it easier for users to find the information they want.

## Rebuild NCZarr Testing
In order to avoid problems with running make check in parallel, two changes were made:
1. The *nczarr_test* test system was rebuilt. Now, for each test.
any generated files are kept in a test-specific directory, isolated
from all other test executions.
2. Similarly, since the S3 test bucket is shared, any generated S3 objects
are isolated using a test-specific key path.

## Other S3 Related Changes
* Add code to ensure that files created on S3 are reclaimed at end of testing.
* Used the bash "trap" command to ensure S3 cleanup even if the test fails.
* Cleanup the S3 related configure.ac flag set since S3 is used in several places. So now one should use the option *--enable-s3* instead of *--enable-nczarr-s3*, although the latter is still kept as a deprecated alias for the former.
* Get some of the github actions yml to work with S3; required fixing various test scripts adding a secret to access the Unidata S3 bucket.
* Cleanup S3 portion of libnetcdf.settings.in and netcdf_meta.h.in and test_common.in.
* Merge partial S3 support into dhttp.c.
* Create an experimental s3 access library especially for use with Windows. It is enabled by using the options *--enable-s3-internal* (automake) or *-DENABLE_S3_INTERNAL=ON* (CMake). Also add a unit-test for it.
* Move some definitions from ncrc.h to ncs3sdk.h

## Other Changes
* Provide a default implementation of strlcpy and move this and similar defaults into *dmissing.c*.
2023-04-25 17:15:06 -06:00

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#!/bin/sh
if test "x$srcdir" = x ; then srcdir=`pwd`; fi
. ../test_common.sh
. "$srcdir/test_nczarr.sh"
s3isolate "testdir_nczarr_fill"
THISDIR=`pwd`
cd $ISOPATH
set -e
echo "*** Test: Github issues #2063, #2062, #2059"
testcase2059() {
zext=$1
echo "*** Test: Github issue #2059"
fileargs tmp_groups_regular "mode=zarr,$zext"
deletemap $zext $file
${NCCOPY} ${srcdir}/ref_groups.h5 "$fileurl"
rm -f tmp_nczfill.cdl
${ZMD} -h "$fileurl"
${NCDUMP} -s -n tmp_groups_regular "$fileurl" > tmp_nczfill.cdl
sclean tmp_nczfill.cdl tmp_groups_regular_$zext.cdl
diff -wb ${srcdir}/ref_groups_regular.cdl tmp_groups_regular_$zext.cdl
}
testcase2062() {
zext=$1
echo "*** Test: Github issue #2062"
rm -fr ref_byte.zarr
unzip ref_byte.zarr.zip >> tmp_ignore.txt
rm -fr tmp_nczfill.cdl
${ZMD} -h "file://ref_byte.zarr#mode=zarr,$zext"
${NCDUMP} -s "file://ref_byte.zarr#mode=zarr,$zext" > tmp_nczfill.cdl
sclean tmp_nczfill.cdl tmp_byte_$zext.cdl
diff -wb ${srcdir}/ref_byte.cdl tmp_byte_$zext.cdl
rm -fr ref_byte.zarr
}
testcase2063() {
zext=$1
echo "*** Test: Github issue #2063"
rm -fr ref_byte_fill_value_null.zarr
unzip ref_byte_fill_value_null.zarr.zip >> tmp_ignore.txt
rm -fr tmp_nczfill.cdl
${ZMD} -h "file://ref_byte_fill_value_null.zarr#mode=zarr,$zext"
${NCDUMP} -s "file://ref_byte_fill_value_null.zarr#mode=zarr,$zext" > tmp_nczfill.cdl
sclean tmp_nczfill.cdl tmp_byte_fill_value_null_$zext.cdl
diff -wb ${srcdir}/ref_byte_fill_value_null.cdl tmp_byte_fill_value_null_$zext.cdl
rm -fr ref_byte_fill_value_null.zarr
}
if ! test -f ${ISOPATH}/ref_byte.zarr.zip ; then
cp -f ${srcdir}/ref_byte.zarr.zip ${ISOPATH}/ref_byte.zarr.zip
cp -f ${srcdir}/ref_byte_fill_value_null.zarr.zip ${ISOPATH}/ref_byte_fill_value_null.zarr.zip
fi
testcase2062 file
testcase2063 file
if test "x$FEATURE_HDF5" = xyes ; then
testcase2059 file
if test "x$FEATURE_NCZARR_ZIP" = xyes ; then
testcase2059 zip
fi
if test "x$FEATURE_S3TESTS" = xyes ; then
testcase2059 s3
fi
fi
if test "x$FEATURE_S3TESTS" = xyes ; then s3sdkdelete "/${S3ISOPATH}" ; fi # Cleanup