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netcdf-c/nczarr_test
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Dennis Heimbigner 8cab468169 Suppress filters on variables with non-fixed-size types. 
re: Discussion https://github.com/Unidata/netcdf-c/discussions/2554
re: PR https://github.com/Unidata/netcdf-c/pull/2231
re: Issue https://github.com/Unidata/netcdf-c/issues/2189

After some discussion, the issue of applying filters on variables
whose type is not fixed size, was resolved as follows:
1. A call to nc_def_var_filter will ignore such filters, but will issue a log warning.
2. Loading (from an existing file) a variable whose type is not fixed-size and which has filters, will cause the variable to be suppressed.

This PR enforces those rules.

### Misc. Other changes
* Add a test case to test the vlen change.
* Make some minor clean-ups in various cmake and automake files.
* Remove unused test
2023-06-21 14:46:22 -06:00
..
refs
bm_chunks3.c Add support for setting HDF5 alignment property when creating a file 2022-01-29 15:27:52 -07:00
bm_timer.h Add missing files so --enable-benchmarks works again. 2021-08-07 21:19:40 -06:00
bm_utils.c Add missing files so --enable-benchmarks works again. 2021-08-07 21:19:40 -06:00
bm_utils.h Add support for setting HDF5 alignment property when creating a file 2022-01-29 15:27:52 -07:00
CMakeLists.txt Suppress filters on variables with non-fixed-size types. 2023-06-21 14:46:22 -06:00
Makefile.am Suppress filters on variables with non-fixed-size types. 2023-06-21 14:46:22 -06:00
ncdumpchunks.c Enhance/Fix filter support 2022-03-14 12:39:37 -06:00
ref_any.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_avail1.cdl
ref_avail1.dmp
ref_avail1.txt
ref_blosc_zmap.txt Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_byte_fill_value_null.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_byte_fill_value_null.zarr.zip Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_byte.cdl Explicitly disallow variable length type compression 2022-02-19 16:47:31 -07:00
ref_byte.zarr.zip Add test cases 2021-08-10 14:15:24 -06:00
ref_bzip2.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_fillonly.cdl
ref_filtered.cdl Add complete bitgroom support to NCZarr 2022-01-24 15:22:24 -07:00
ref_groups_regular.cdl Explicitly disallow variable length type compression 2022-02-19 16:47:31 -07:00
ref_groups.h5 Add test cases 2021-08-10 14:15:24 -06:00
ref_jsonconvention.cdl Add support for Zarr string type to NCZarr 2022-08-27 20:21:13 -06:00
ref_jsonconvention.zmap Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
ref_misc1.cdl
ref_misc1.dmp
ref_misc2.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_multi.cdl Improve filter installation process to avoid use of an extra shell script 2022-05-14 16:05:48 -06:00
ref_nczarr2zarr.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_ndims.cdl
ref_ndims.dmp
ref_newformatpure.cdl Fix some addtional errors in NCZarr 2022-09-09 14:25:24 -06:00
ref_notzarr.tar.gz Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
ref_nulls_nczarr.baseline Fix some addtional errors in NCZarr 2022-09-09 14:25:24 -06:00
ref_nulls_zarr.baseline Fix some addtional errors in NCZarr 2022-09-09 14:25:24 -06:00
ref_nulls.cdl Fix some addtional errors in NCZarr 2022-09-09 14:25:24 -06:00
ref_oldformat.cdl Move to Version 2 NCZarr Extended Meta-Data 2021-07-17 16:55:30 -06:00
ref_oldformat.zip Fix some addtional errors in NCZarr 2022-09-09 14:25:24 -06:00
ref_perdimspecs.cdl
ref_power_901_constants_orig.zip Improve filter installation process to avoid use of an extra shell script 2022-05-14 16:05:48 -06:00
ref_power_901_constants.cdl Fix JSON quoted string processing in libnczarr 2021-05-06 16:39:44 -06:00
ref_purezarr_base.cdl Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_purezarr.cdl Add complete bitgroom support to NCZarr 2022-01-24 15:22:24 -07:00
ref_quotes_orig.zip Improve filter installation process to avoid use of an extra shell script 2022-05-14 16:05:48 -06:00
ref_quotes.cdl Add support for Zarr string type to NCZarr 2022-08-27 20:21:13 -06:00
ref_rem.cdl
ref_rem.dmp
ref_scalar.cdl Fix missing files 2022-09-03 14:57:48 -06:00
ref_skip.cdl
ref_skip.txt
ref_skipw.cdl
ref_string_nczarr.baseline Fix missing files 2022-09-03 14:57:48 -06:00
ref_string_zarr.baseline Fix some addtional errors in NCZarr 2022-09-09 14:25:24 -06:00
ref_string.cdl Fix some problems with PR https://github.com/Unidata/netcdf-c/pull/2492 2022-09-03 14:21:48 -06:00
ref_t_meta_dim1.cdl
ref_t_meta_var1.cdl
ref_ut_json_build.txt
ref_ut_json_parse.txt
ref_ut_map_create.cdl
ref_ut_map_readdata_nz4.txt
ref_ut_map_readmeta2.txt Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_ut_map_readmeta_nz4.txt
ref_ut_map_readmeta_nzf.txt
ref_ut_map_readmeta.txt
ref_ut_map_search_nz4.txt
ref_ut_map_search_nzf.txt
ref_ut_map_search.txt Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_ut_map_writedata.cdl Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_ut_map_writemeta2.cdl Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_ut_map_writemeta.cdl
ref_ut_mapapi_create.cdl
ref_ut_mapapi_data.cdl
ref_ut_mapapi_meta.cdl
ref_ut_mapapi_search_nz4.txt
ref_ut_mapapi_search_nzf.txt
ref_ut_mapapi_search_s3.txt
ref_ut_mapapi_search.txt
ref_ut_proj.txt
ref_ut_testmap_create.cdl
ref_whole.cdl
ref_whole.txt
ref_xarray.cdl Add complete bitgroom support to NCZarr 2022-01-24 15:22:24 -07:00
ref_zarr_test_data.cdl.gz Add support for Zarr string type to NCZarr 2022-08-27 20:21:13 -06:00
run_chunkcases.sh ## Addendum [5/9/23] 2023-05-09 21:13:49 -06:00
run_external.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_fillonlyz.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_filter.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_interop.sh ## Addendum [5/9/23] 2023-05-09 21:13:49 -06:00
run_it_chunks1.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_jsonconvention.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_misc.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_nccopyz.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_ncgen4.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_nczarr_fill.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_nczfilter.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_newformat.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_notzarr.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_nulls.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_perf_chunks1.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_purezarr.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_quantize.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_s3_cleanup.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_scalar.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_strings.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_ut_chunk.sh
run_ut_map.sh
run_ut_mapapi.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
run_ut_misc.sh
s3util.c Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
test_nczarr_utils.h More tweaks. 2022-01-24 15:21:29 -07:00
test_nczarr.sh ## Addendum [5/9/23] 2023-05-09 21:13:49 -06:00
testfilter_misc.c Fix a few memory leaks and erroneous logic in nczarr_test/testfilter_misc 2022-01-09 14:41:35 -05:00
testfilter_multi.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
testfilter_order.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
testfilter_repeat.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
testfilter.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
tst_chunkcases.c
tst_fillonlyz.c
tst_nczfilter.c Enhance/Fix filter support 2022-03-14 12:39:37 -06:00
tst_notzarr.c Check at nc_open if file appears to be in NCZarr/Zarr format. 2023-03-13 13:24:14 -06:00
tst_utils.c Merge branch 'master' into eliminate_need_for_hdf5-1.6-API 2021-05-28 07:11:13 -06:00
tst_utils.h
tst_zchunks2.c
tst_zchunks3.c Explicitly disallow variable length type compression 2022-02-19 16:47:31 -07:00
tst_zchunks.c Remove stray character. 2022-01-24 15:30:01 -07:00
ut_chunking.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_includes.h Fix bad chunkpath calculation 2021-07-18 16:20:22 -06:00
ut_json.c Explicitly disallow variable length type compression 2022-02-19 16:47:31 -07:00
ut_map.c Support MSYS2/Mingw platform 2021-12-23 22:18:56 -07:00
ut_mapapi.c Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
ut_projections.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_projtest.h
ut_test.c Check at nc_open if file appears to be in NCZarr/Zarr format. 2023-03-13 13:24:14 -06:00
ut_test.h Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_util.c Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
ut_util.h
z4dump.c
zhex.c Improve UTF8 Support On Windows 2022-02-08 20:53:30 -07:00
zisjson.c Allow the read/write of JSON-valued Zarr attributes. 2022-04-06 18:22:59 -06:00
zmapio.c Improve performance of the nc_reclaim_data and nc_copy_data functions. 2023-05-20 17:11:25 -06:00
zs3parse.c Improve UTF8 Support On Windows 2022-02-08 20:53:30 -07:00