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Dennis Heimbigner f0f0f39950 Cleanup various Zarr-related build issues 
# Description
Remove various obsolete build options. Also do some code movement.

## Specific Changes

* The remotetest server is sometimes unstable, so provide a mechanism
  to force disabling calls to remotetest.unidata.ucar.edu.
  This is enabled by adding a repository variable named
  REMOTETESTDOWN with the value "yes".
* Fix CMakeLists.txt to use the uname command as an alternate
  to using the hostname command (which does not work under cygwin).
* Remove the JNA stuff as obsolete
* Remove the ENABLE_CLIENTSIDE_FILTERS options since it has been
  disabled for a while.
* Fix bad option flag in some github action .yml files: change --disable-xml2 to --disable-libxml2
* Collect globalstate definitions into nc4internal.h
* Remove ENABLE_NCZARR_FILTERS_TESTING option as obsolete and replace
  with ENABLE_NCZARR_FILTERS
* Move some dispatcher independent functions from libsrc4/nc4internal.c to libdispatch/ddispatch.c
* As a long term goal, and because it is now the case that --enable-nczarr
    => USE_NETCDF4, make the external options --enable-netcdf-4 and
    --enable-netcdf4 obsolete in favor of --enable-hdf5
    We will do the following for one more release cycle.
        1. Make --enable-netcdf-4 be an alias for --enable-netcdf4.
        2. Make --enable-netcdf4 an alias for --enable-hdf5.
        3. Internally, convert most uses of USE_NETCDF_4 ad USE_NETCDF4 to USE_HDF5
    After the next release, --enable-netcdf-4 and --enable-netcdf4 will
    be removed.
2024-05-15 18:46:25 -06:00
..
cdl Adding a missing file to make dist. 2022-02-01 11:46:01 -07:00
expected Adding a missing reference file. 2022-02-01 11:48:27 -07:00
acpget.c Improve UTF8 Support On Windows 2022-02-08 20:53:30 -07:00
bom.c
cdl.h
chunkspec.c Auto fixed clang-tidy readability-redundant-control-flow warnings 2024-03-01 20:46:58 -05:00
chunkspec.h Fix return type on a couple of internal utility functions 2024-01-15 15:46:13 +00:00
CMakeLists.txt Merge pull request #2917 from MehdiChinoune/ci-mingw 2024-05-14 17:26:43 -07:00
depend
dimmap.c
dimmap.h
dumplib.c Merge branch 'main' into clang-tidy-fixes 2024-04-02 15:30:47 -06:00
dumplib.h Return int from internal sbuf_len function 2023-11-27 15:10:30 +00:00
env
indent.c
indent.h Fixed Clang -Wstrict-prototypes warnings 2022-03-01 23:21:24 -05:00
inttags4.cdl
inttags.cdl
L512.bin
list.c Silence various conversion warnings in ncdump 2024-01-15 15:46:13 +00:00
list.h Extend nccopy -F option syntax. 2019-02-08 18:48:17 -07:00
Makefile.am Replace ENABLE_DAP with NETCDF_ENABLE_DAP 2024-03-18 15:51:14 -05:00
nc4print.c Codify cross-platform file paths 2021-03-04 13:41:31 -07:00
nc4printer.c Merge pull request #2840 from ZedThree/silence-ncdump-warnings 2024-02-09 16:49:01 -07:00
nccomps.h
nccopy.1 More fixes to the nccopy filter x chunking algorithm 2021-01-31 15:10:39 -07:00
nccopy.c Merge branch 'main' into clang-tidy-fixes 2024-04-02 15:30:47 -06:00
ncdump.1 Enhance/Fix filter support 2022-03-14 12:39:37 -06:00
ncdump.c Refactor macro _FillValue to NC_FillValue in support of https://github.com/Unidata/netcdf-c/issues/2858 2024-04-24 11:38:07 -06:00
ncdump.h Cleanup DAP4 testing 2022-11-13 13:15:11 -07:00
ncfilteravail.c Replace ENABLE_NCZARR with NETCDF_ENABLE_NCZARR 2024-03-18 15:52:19 -05:00
nchdf5version.c Silence various conversion warnings in ncdump 2024-01-15 15:46:13 +00:00
nciter.c Silence various conversion warnings in ncdump 2024-01-15 15:46:13 +00:00
nciter.h
ncpathcvt.c chore: unset executable flag 2023-08-23 13:31:42 +09:00
nctime0.c Auto fixed clang-tidy readability-redundant-control-flow warnings 2024-03-01 20:46:58 -05:00
nctime0.h
nctrunc.c Improve UTF8 Support On Windows 2022-02-08 20:53:30 -07:00
ncvalidator.c Auto fixed clang-tidy bugprone-suspicious-string-compare warnings 2024-03-01 20:46:58 -05:00
ocprint.c Change format of backwards-loops 2024-03-25 14:25:38 +00:00
printfqn.c Two fixes for the price of one! 2022-04-28 15:51:20 -06:00
ref1.ncml Docs migration 2021-11-11 10:47:49 -07:00
ref_ctest1_nc4.cdl
ref_ctest1_nc4c.cdl
ref_ctest64.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
ref_ctest_small_3.c Add test cases 2019-11-03 12:03:13 -07:00
ref_ctest_small_4.c Add test cases 2019-11-03 12:03:13 -07:00
ref_ctest_special_atts_4.c 1. Fix an additional flaw in fill_value handling where non-atomic default values were not properly being handled. 2022-01-10 22:26:19 -07:00
ref_ctest.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
ref_inttags4.cdl
ref_inttags.cdl
ref_keyword1.cdl Allow use of type keywords as identifier in formats that do not support that type. 2020-06-05 17:03:29 -06:00
ref_keyword2.cdl Allow use of type keywords as identifier in formats that do not support that type. 2020-06-05 17:03:29 -06:00
ref_keyword3.cdl Fix the handling of certain alias types on CDL files. 2021-04-13 16:56:43 -06:00
ref_keyword4.cdl Fix the handling of certain alias types on CDL files. 2021-04-13 16:56:43 -06:00
ref_nc_test_netcdf4_4_0.nc
ref_nc_test_netcdf4.cdl
ref_nccopy3_subset.nc
ref_nccopy_w.cdl Fix nccopy to use NC_PERSIST so that -w actually persists the output. 2019-03-15 12:05:27 -06:00
ref_no_ncproperty.nc Simplify libhdf5/nc5info.c to move to lazy parsing 2019-03-09 20:35:57 -07:00
ref_null_byte_padding_test.nc
ref_pathcvt.txt Support MSYS2/Mingw platform 2021-12-23 22:18:56 -07:00
ref_provenance_v1.nc
ref_rcapi.txt Make public a limited API for programmatic access to internal .rc tables 2022-06-17 14:35:12 -06:00
ref_rcmerge1.txt Fix a number of OS specific bugs 2021-11-03 12:49:54 -06:00
ref_rcmerge2.txt Fix a number of OS specific bugs 2021-11-03 12:49:54 -06:00
ref_rcmerge3.txt Fix a number of OS specific bugs 2021-11-03 12:49:54 -06:00
ref_roman_szip_simple.cdl added some ncdump tests for szip when it is present 2020-07-02 13:59:37 -06:00
ref_roman_szip_unlim.cdl added some ncdump tests for szip when it is present 2020-07-02 13:59:37 -06:00
ref_test_360_day_1900.cdl
ref_test_360_day_1900.nc
ref_test_365_day_1900.cdl
ref_test_365_day_1900.nc
ref_test_366_day_1900.cdl
ref_test_366_day_1900.nc
ref_test_corrupt_magic.nc
ref_times_nc4.cdl Added an ncdump -t calendars test using variable length string 2023-01-08 15:58:20 -07:00
ref_times.cdl Test ncdump time unit name case-insensitivity 2020-05-14 06:42:12 -06:00
ref_tst_charfill.cdl
ref_tst_comp2.cdl
ref_tst_comp.cdl
ref_tst_compounds2.cdl
ref_tst_compounds2.nc
ref_tst_compounds3.cdl
ref_tst_compounds3.nc
ref_tst_compounds4.cdl
ref_tst_compounds4.nc
ref_tst_enum_data.cdl
ref_tst_enum_undef.cdl Provide a default enum const when fill value does not match any enum const. 2022-07-17 14:32:31 -06:00
ref_tst_fillbug.cdl
ref_tst_format_att_64.cdl
ref_tst_format_att.cdl
ref_tst_group_data_v23.cdl
ref_tst_group_data.cdl
ref_tst_grp_spec0.cdl
ref_tst_grp_spec.cdl
ref_tst_irish_rover.nc
ref_tst_mud4_chars.cdl
ref_tst_mud4-bc.cdl
ref_tst_mud4.cdl
ref_tst_nans.cdl
ref_tst_nc4_utf8_4.cdl
ref_tst_ncf213.cdl Enhance/Fix filter support 2022-03-14 12:39:37 -06:00
ref_tst_nofilters.cdl More fixes to the nccopy filter x chunking algorithm 2021-01-31 15:10:39 -07:00
ref_tst_noncoord.cdl
ref_tst_opaque_data.cdl
ref_tst_perdimspecs.cdl Fix nccopy -c dim/x to actually use the dim/x value. 2020-09-01 13:44:24 -06:00
ref_tst_radix.cdl Fix ncgen handling of octal constants (with leading 0). 2019-02-25 20:57:23 -07:00
ref_tst_small.cdl
ref_tst_solar_1.cdl
ref_tst_solar_2.cdl
ref_tst_special_atts3.cdl
ref_tst_special_atts.cdl Enhance/Fix filter support 2022-03-14 12:39:37 -06:00
ref_tst_string_data.cdl
ref_tst_unicode.cdl
ref_tst_utf8_4.cdl
ref_tst_utf8.cdl Fix various problem around VLEN's 2022-01-08 18:30:00 -07:00
ref_tst_vlen_data2.cdl
ref_tst_vlen_data.cdl
rewrite-scalar.c
run_back_comp_tests.sh Fix race condition in ncdump (and other) tests. 2022-11-08 20:12:38 -07:00
run_cygutf8.sh Improve UTF8 Support On Windows 2022-02-08 20:53:30 -07:00
run_ncgen_nc4_tests.sh Fix various problem around VLEN's 2022-01-08 18:30:00 -07:00
run_ncgen_tests.sh Replace ENABLE_CDF5 with NETCDF_ENABLE_CDF5 2024-03-18 15:51:04 -05:00
run_tests.sh clean up 2019-03-12 09:54:16 -06:00
run_utf8_nc4_tests.sh
run_utf8_tests.sh
scope_ancestor_only.cdl Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
scope_ancestor_subgroup.cdl Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
scope_group_only.cdl Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
scope_preorder.cdl Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
small2.cdl
small.cdl
test0.cdl
test_corrupt_magic.cdl
test_keywords.sh Support MSYS2/Mingw platform 2021-12-23 22:18:56 -07:00
test_ncdump.sh Mitigate S3 test interference + Unlimited Dimensions in NCZarr 2023-09-26 16:56:48 -06:00
test_radix.sh Fix ncgen handling of octal constants (with leading 0). 2019-02-25 20:57:23 -07:00
test_rcmerge.sh Provide a single option to disable all network access and testing. 2023-06-10 14:08:04 -06:00
test_scope.sh Improve filter installation process to avoid use of an extra shell script 2022-05-14 16:05:48 -06:00
test_unicode_directory.sh Codify cross-platform file paths 2021-03-04 13:41:31 -07:00
test_unicode_path.sh Improve UTF8 Support On Windows 2022-02-08 20:53:30 -07:00
testpathcvt.sh Update to latest main 2023-04-04 18:37:20 -06:00
tst_64bit.sh Replace ENABLE_CDF5 with NETCDF_ENABLE_CDF5 2024-03-18 15:51:04 -05:00
tst_bom.sh Cleanup various Zarr-related build issues 2024-05-15 18:46:25 -06:00
tst_brecs.cdl
tst_bug321.cdl
tst_calendars_nc4.cdl Added an ncdump -t calendars test using variable length string 2023-01-08 15:58:20 -07:00
tst_calendars_nc4.sh Added an ncdump -t calendars test using variable length string 2023-01-08 15:58:20 -07:00
tst_calendars.cdl Test ncdump time unit name case-insensitivity 2020-05-14 06:42:12 -06:00
tst_calendars.sh
tst_charfill.cdl
tst_charfill.sh
tst_chunking.c Fix a couple of conversion warnings in shared nczarr/ncdump test 2024-01-15 13:57:22 +00:00
tst_comp2.c Silence various conversion warnings in ncdump 2024-01-15 15:46:13 +00:00
tst_comp.c Silence various conversion warnings in ncdump 2024-01-15 15:46:13 +00:00
tst_compress.c Add a comment 2021-08-16 10:06:45 -06:00
tst_create_files.c Silence conversion warnings from malloc arguments 2023-11-24 18:20:52 +00:00
tst_ctests.sh Add test cases 2019-11-03 12:03:13 -07:00
tst_cygutf8.c Improve UTF8 Support On Windows 2022-02-08 20:53:30 -07:00
tst_dimsizes.c Replace ENABLE_CDF5 with NETCDF_ENABLE_CDF5 2024-03-18 15:51:04 -05:00
tst_dimsizes.sh Add complete bitgroom support to NCZarr 2022-01-24 15:22:24 -07:00
tst_enum_data.c
tst_enum_undef.c Provide a default enum const when fill value does not match any enum const. 2022-07-17 14:32:31 -06:00
tst_fileinfo.c
tst_fileinfo.sh Fix undefined references when using Visual Studio 2020-05-18 19:36:28 -06:00
tst_fillbug.c Silence conversion warnings from malloc arguments 2023-11-24 18:20:52 +00:00
tst_fillbug.sh
tst_formatx3.sh Replace ENABLE_CDF5 with NETCDF_ENABLE_CDF5 2024-03-18 15:51:04 -05:00
tst_formatx4.sh
tst_group_data.c
tst_grp_spec.sh
tst_h_rdc0.c Remove need for HDF5-1.6 API being defined 2021-04-28 13:59:24 -06:00
tst_h_scalar.c
tst_h_scalar.sh
tst_hdf5_offset.sh Fix undefined references when using Visual Studio 2020-05-18 19:36:28 -06:00
tst_inmemory_nc3.sh
tst_inmemory_nc4.sh
tst_inttags4.sh
tst_inttags.sh
tst_iter.sh
tst_lengths.sh Replace ENABLE_CDF5 with NETCDF_ENABLE_CDF5 2024-03-18 15:51:04 -05:00
tst_mslp.cdl
tst_mud.sh Mitigate S3 test interference + Unlimited Dimensions in NCZarr 2023-09-26 16:56:48 -06:00
tst_nans.c Refactor macro _FillValue to NC_FillValue in support of https://github.com/Unidata/netcdf-c/issues/2858 2024-04-24 11:38:07 -06:00
tst_nccopy3_subset.sh
tst_nccopy3.sh Replace ENABLE_CDF5 with NETCDF_ENABLE_CDF5 2024-03-18 15:51:04 -05:00
tst_nccopy4.sh Mitigate S3 test interference + Unlimited Dimensions in NCZarr 2023-09-26 16:56:48 -06:00
tst_nccopy5.sh Mitigate S3 test interference + Unlimited Dimensions in NCZarr 2023-09-26 16:56:48 -06:00
tst_nccopy_w3.sh Fix nccopy to use NC_PERSIST so that -w actually persists the output. 2019-03-15 12:05:27 -06:00
tst_nccopy_w4.sh Fix nccopy to use NC_PERSIST so that -w actually persists the output. 2019-03-15 12:05:27 -06:00
tst_ncgen4_classic.sh
tst_ncgen4_cycle.sh Fix handling of enum constants nested in compound types. 2021-09-12 18:03:57 -06:00
tst_ncgen4_diff.sh Improve S3 Documentation and Support 2023-04-25 17:15:06 -06:00
tst_ncgen4.sh
tst_ncgen_shared.sh Fix various problem around VLEN's 2022-01-08 18:30:00 -07:00
tst_ncml.cdl
tst_netcdf4_4.sh Enhance/Fix filter support 2022-03-14 12:39:37 -06:00
tst_netcdf4.sh Mitigate S3 test interference + Unlimited Dimensions in NCZarr 2023-09-26 16:56:48 -06:00
tst_null_byte_padding.sh
tst_opaque_data.c Silence various conversion warnings in ncdump 2024-01-15 15:46:13 +00:00
tst_output.sh typo 2022-05-19 22:43:08 -06:00
tst_radix.cdl Fix ncgen handling of octal constants (with leading 0). 2019-02-25 20:57:23 -07:00
tst_rcapi.c chore: unset executable flag 2023-08-23 13:31:42 +09:00
tst_rcmerge.c Make public a limited API for programmatic access to internal .rc tables 2022-06-17 14:35:12 -06:00
tst_special_atts.c Make utilities support NC_COMPACT 2020-02-29 12:06:21 -07:00
tst_string_data.c
tst_unicode.c Explicitly disallow variable length type compression 2022-02-19 16:47:31 -07:00
tst_utf8.c Auto fixed clang-tidy bugprone-suspicious-string-compare warnings 2024-03-01 20:46:58 -05:00
tst_vlen_data.c Silence various conversion warnings in ncdump 2024-01-15 15:46:13 +00:00
tst_vlen_demo.c
utils.c Silence various conversion warnings in ncdump 2024-01-15 15:46:13 +00:00
utils.h Fix return type on a couple of internal utility functions 2024-01-15 15:46:13 +00:00
vardata.c Modify ncdump to print char-valued variables as utf8. 2024-05-07 10:36:14 -06:00
vardata.h