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netcdf-c/nczarr_test
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Dennis Heimbigner 9f848c9e53 Fix race condition in ncdump (and other) tests. 
re: Issue https://github.com/Unidata/netcdf-c/issues/2551

Ryan May identified the use of a common scratch file (tmp.cdl)
across multiple test shell scripts in ncdump directory
and the nczarr_test directory.
This sometimes causes errors because of race conditions
between those scripts.

I renamed those common files to avoid the race condition.  I
also did some further checking and found some additional,
similar conflicts and fixed those. Also did some minor cleanup
of unused files.

Tests fixed:
ncdump: run_back_comp_tests.sh tst_bom.sh tst_nccopy4.sh tst_nccopy5.sh
nczarr_test: git df master -- run_nccopyz.sh run_nczarr_fill.sh run_scalar.sh
2022-11-08 20:12:38 -07:00
..
refs
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
bm_chunks3.c
Add support for setting HDF5 alignment property when creating a file
2022-01-29 15:27:52 -07:00
bm_timer.h
Add missing files so --enable-benchmarks works again.
2021-08-07 21:19:40 -06:00
bm_utils.c
Add missing files so --enable-benchmarks works again.
2021-08-07 21:19:40 -06:00
bm_utils.h
Add support for setting HDF5 alignment property when creating a file
2022-01-29 15:27:52 -07:00
CMakeLists.txt
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
Makefile.am
TST: Mark nczarr s3 cleanup test XFAIL on Cygwin instead of skipping.
2022-10-12 13:36:52 -04:00
ncdumpchunks.c
Enhance/Fix filter support
2022-03-14 12:39:37 -06:00
ref_any.cdl
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
ref_avail1.cdl
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_avail1.dmp
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_avail1.txt
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_blosc_zmap.txt
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
ref_byte_fill_value_null.cdl
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
ref_byte_fill_value_null.zarr.zip
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
ref_byte.cdl
Explicitly disallow variable length type compression
2022-02-19 16:47:31 -07:00
ref_byte.zarr.zip
Add test cases
2021-08-10 14:15:24 -06:00
ref_bzip2.cdl
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
ref_fillonly.cdl
Fix error where not converting fill data
2020-09-12 14:49:59 -06:00
ref_filtered.cdl
Add complete bitgroom support to NCZarr
2022-01-24 15:22:24 -07:00
ref_groups_regular.cdl
Explicitly disallow variable length type compression
2022-02-19 16:47:31 -07:00
ref_groups.h5
Add test cases
2021-08-10 14:15:24 -06:00
ref_jsonconvention.cdl
Add support for Zarr string type to NCZarr
2022-08-27 20:21:13 -06:00
ref_jsonconvention.zmap
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
ref_misc1.cdl
Fix some additional edges cases for mapping slices to chunks
2020-12-19 21:17:46 -07:00
ref_misc1.dmp
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_misc2.cdl
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
ref_multi.cdl
Improve filter installation process to avoid use of an extra shell script
2022-05-14 16:05:48 -06:00
ref_nczarr2zarr.cdl
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
ref_ndims.cdl
Fix some additional edges cases for mapping slices to chunks
2020-12-19 21:17:46 -07:00
ref_ndims.dmp
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_newformatpure.cdl
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
ref_nulls_nczarr.baseline
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
ref_nulls_zarr.baseline
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
ref_nulls.cdl
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
ref_oldformat.cdl
Move to Version 2 NCZarr Extended Meta-Data
2021-07-17 16:55:30 -06:00
ref_oldformat.zip
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
ref_perdimspecs.cdl
Provide a Number of fixes/improvements to NCZarr
2020-11-19 17:01:04 -07:00
ref_power_901_constants_orig.zip
Improve filter installation process to avoid use of an extra shell script
2022-05-14 16:05:48 -06:00
ref_power_901_constants.cdl
Fix JSON quoted string processing in libnczarr
2021-05-06 16:39:44 -06:00
ref_purezarr_base.cdl
Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute
2021-02-24 13:46:11 -07:00
ref_purezarr.cdl
Add complete bitgroom support to NCZarr
2022-01-24 15:22:24 -07:00
ref_quotes_orig.zip
Improve filter installation process to avoid use of an extra shell script
2022-05-14 16:05:48 -06:00
ref_quotes.cdl
Add support for Zarr string type to NCZarr
2022-08-27 20:21:13 -06:00
ref_rem.cdl
Fix some additional edges cases for mapping slices to chunks
2020-12-19 21:17:46 -07:00
ref_rem.dmp
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_scalar.cdl
Fix missing files
2022-09-03 14:57:48 -06:00
ref_skip.cdl
Additional Fixes to NCZarr
2020-12-16 20:48:02 -07:00
ref_skip.txt
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_skipw.cdl
Fix some additional edges cases for mapping slices to chunks
2020-12-19 21:17:46 -07:00
ref_string_nczarr.baseline
Fix missing files
2022-09-03 14:57:48 -06:00
ref_string_zarr.baseline
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
ref_string.cdl
Fix some problems with PR https://github.com/Unidata/netcdf-c/pull/2492
2022-09-03 14:21:48 -06:00
ref_t_meta_dim1.cdl
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
ref_t_meta_var1.cdl
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
ref_ut_json_build.txt
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
ref_ut_json_parse.txt
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
ref_ut_map_create.cdl
Add zip file support
2021-01-28 20:11:01 -07:00
ref_ut_map_readdata_nz4.txt
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
ref_ut_map_readmeta2.txt
Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute
2021-02-24 13:46:11 -07:00
ref_ut_map_readmeta_nz4.txt
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
ref_ut_map_readmeta_nzf.txt
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
ref_ut_map_readmeta.txt
Add zip file support
2021-01-28 20:11:01 -07:00
ref_ut_map_search_nz4.txt
Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries""
2020-08-17 19:15:47 -06:00
ref_ut_map_search_nzf.txt
Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries""
2020-08-17 19:15:47 -06:00
ref_ut_map_search.txt
Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute
2021-02-24 13:46:11 -07:00
ref_ut_map_writedata.cdl
Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute
2021-02-24 13:46:11 -07:00
ref_ut_map_writemeta2.cdl
Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute
2021-02-24 13:46:11 -07:00
ref_ut_map_writemeta.cdl
Add zip file support
2021-01-28 20:11:01 -07:00
ref_ut_mapapi_create.cdl
Add zip file support
2021-01-28 20:11:01 -07:00
ref_ut_mapapi_data.cdl
Add zip file support
2021-01-28 20:11:01 -07:00
ref_ut_mapapi_meta.cdl
Add zip file support
2021-01-28 20:11:01 -07:00
ref_ut_mapapi_search_nz4.txt
Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries""
2020-08-17 19:15:47 -06:00
ref_ut_mapapi_search_nzf.txt
Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries""
2020-08-17 19:15:47 -06:00
ref_ut_mapapi_search_s3.txt
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
ref_ut_mapapi_search.txt
Add zip file support
2021-01-28 20:11:01 -07:00
ref_ut_proj.txt
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_ut_testmap_create.cdl
Add zip file support
2021-01-28 20:11:01 -07:00
ref_whole.cdl
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_whole.txt
More NCZarr optimizations
2021-01-06 13:35:59 -07:00
ref_xarray.cdl
Add complete bitgroom support to NCZarr
2022-01-24 15:22:24 -07:00
ref_zarr_test_data.cdl.gz
Add support for Zarr string type to NCZarr
2022-08-27 20:21:13 -06:00
run_chunkcases.sh
Upgrade the nczarr code to match Zarr V2
2021-04-24 19:48:15 -06:00
run_fillonlyz.sh
Add zip file support
2021-01-28 20:11:01 -07:00
run_filter.sh
merged
2022-05-24 19:59:36 -06:00
run_interop.sh
Improve filter installation process to avoid use of an extra shell script
2022-05-14 16:05:48 -06:00
run_it_chunks1.sh
Add zip file support
2021-01-28 20:11:01 -07:00
run_jsonconvention.sh
Add support for Zarr string type to NCZarr
2022-08-27 20:21:13 -06:00
run_misc.sh
Add test cases
2021-08-10 14:15:24 -06:00
run_nccopyz.sh
Fix race condition in ncdump (and other) tests.
2022-11-08 20:12:38 -07:00
run_ncgen4.sh
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
run_nczarr_fill.sh
Fix race condition in ncdump (and other) tests.
2022-11-08 20:12:38 -07:00
run_nczfilter.sh
Enhance/Fix filter support
2022-03-14 12:39:37 -06:00
run_newformat.sh
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
run_nulls.sh
Fix some addtional errors in NCZarr
2022-09-09 14:25:24 -06:00
run_perf_chunks1.sh
Add zip file support
2021-01-28 20:11:01 -07:00
run_purezarr.sh
Turn on the xarray convention for NCZarr format
2022-03-23 19:28:06 -06:00
run_quantize.sh
Fix some problems with PR https://github.com/Unidata/netcdf-c/pull/2492
2022-09-03 14:21:48 -06:00
run_s3_cleanup.sh
Add zip file support
2021-01-28 20:11:01 -07:00
run_scalar.sh
Fix race condition in ncdump (and other) tests.
2022-11-08 20:12:38 -07:00
run_strings.sh
update file permission
2022-09-03 14:21:36 -06:00
run_ut_chunk.sh
Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries""
2020-08-17 19:15:47 -06:00
run_ut_map.sh
Add zip file support
2021-01-28 20:11:01 -07:00
run_ut_mapapi.sh
Fix additional S3 support issues
2021-10-29 20:06:37 -06:00
run_ut_misc.sh
Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries""
2020-08-17 19:15:47 -06:00
s3util.c
Explicitly disallow variable length type compression
2022-02-19 16:47:31 -07:00
test_nczarr_utils.h
More tweaks.
2022-01-24 15:21:29 -07:00
test_nczarr.sh
Support installation of filters into user-specified location
2022-04-29 14:31:55 -06:00
testfilter_misc.c
Fix a few memory leaks and erroneous logic in nczarr_test/testfilter_misc
2022-01-09 14:41:35 -05:00
testfilter_multi.c
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
testfilter_order.c
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
testfilter_repeat.c
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
testfilter.c
Add filter support to NCZarr
2021-09-02 17:04:26 -06:00
tst_chunkcases.c
Add zip file support
2021-01-28 20:11:01 -07:00
tst_fillonlyz.c
Add zip file support
2021-01-28 20:11:01 -07:00
tst_nczfilter.c
Enhance/Fix filter support
2022-03-14 12:39:37 -06:00
tst_utils.c
Merge branch 'master' into eliminate_need_for_hdf5-1.6-API
2021-05-28 07:11:13 -06:00
tst_utils.h
Add zip file support
2021-01-28 20:11:01 -07:00
tst_zchunks2.c
Additional Fixes to NCZarr
2020-12-16 20:48:02 -07:00
tst_zchunks3.c
Explicitly disallow variable length type compression
2022-02-19 16:47:31 -07:00
tst_zchunks.c
Remove stray character.
2022-01-24 15:30:01 -07:00
ut_chunking.c
Fix additional S3 support issues
2021-10-29 20:06:37 -06:00
ut_includes.h
Fix bad chunkpath calculation
2021-07-18 16:20:22 -06:00
ut_json.c
Explicitly disallow variable length type compression
2022-02-19 16:47:31 -07:00
ut_map.c
Support MSYS2/Mingw platform
2021-12-23 22:18:56 -07:00
ut_mapapi.c
Fix additional S3 support issues
2021-10-29 20:06:37 -06:00
ut_projections.c
Fix additional S3 support issues
2021-10-29 20:06:37 -06:00
ut_projtest.h
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
ut_test.c
Fix additional S3 support issues
2021-10-29 20:06:37 -06:00
ut_test.h
Fix additional S3 support issues
2021-10-29 20:06:37 -06:00
ut_util.c
Add zip file support
2021-01-28 20:11:01 -07:00
ut_util.h
Fix some additional edges cases for mapping slices to chunks
2020-12-19 21:17:46 -07:00
z4dump.c
This PR adds EXPERIMENTAL support for accessing data in the
2020-06-28 18:02:47 -06:00
zhex.c
Improve UTF8 Support On Windows
2022-02-08 20:53:30 -07:00
zisjson.c
Allow the read/write of JSON-valued Zarr attributes.
2022-04-06 18:22:59 -06:00
zmapio.c
Add support for Zarr string type to NCZarr
2022-08-27 20:21:13 -06:00
zs3parse.c
Improve UTF8 Support On Windows
2022-02-08 20:53:30 -07:00