mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-12-09 08:11:38 +08:00
4db4393e69
strlcat provides better protection against buffer overflows. Code is taken from the FreeBSD project source code. Specifically: https://github.com/freebsd/freebsd/blob/master/lib/libc/string/strlcat.c License appears to be acceptable, but needs to be checked by e.g. Debian. Step 1: 1. Add to netcdf-c/include/ncconfigure.h to use our version if not already available as determined by HAVE_STRLCAT in config.h. 2. Add the strlcat code to libdispatch/dstring.c 3. Turns out that strlcat was already defined in several places. So remove it from: ncgen3/genlib.c ncdump/dumplib.c 3. Define strlcat extern definition in ncconfigure.h. 4. Modify following directories to use strlcat: libdap2 libdap4 ncdap_test dap4_test Will do others in subsequent steps.
2018 lines
50 KiB
C
2018 lines
50 KiB
C
/*********************************************************************
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* Copyright 1993, UCAR/Unidata
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* See netcdf/COPYRIGHT file for copying and redistribution conditions.
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* $Header: /upc/share/CVS/netcdf-3/ncgen3/genlib.c,v 1.54 2009/11/14 22:33:31 dmh Exp $
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*********************************************************************/
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#include "config.h"
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#include <stdio.h>
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#include <stdlib.h>
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#include <assert.h>
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#include <string.h>
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#include <ctype.h> /* for isprint() */
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#ifndef NO_STDARG
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#include <stdarg.h>
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#else
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/* try varargs instead */
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#include <varargs.h>
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#endif /* !NO_STDARG */
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#include <netcdf.h>
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#include "generic.h"
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#include "ncgen.h"
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#include "genlib.h"
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extern char *netcdf_name; /* output netCDF filename, if on command line. */
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extern int netcdf_flag;
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extern int c_flag;
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extern int fortran_flag;
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extern int cmode_modifier;
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extern int nofill_flag;
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int lineno = 1;
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int derror_count = 0;
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/* create netCDF from in-memory structure */
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static void
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gen_netcdf(
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char *filename) /* name for output netcdf file */
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{
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int idim, ivar, iatt;
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int dimid;
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int varid;
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int stat;
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stat = nc_create(filename, cmode_modifier, &ncid);
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check_err(stat);
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/* define dimensions from info in dims array */
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for (idim = 0; idim < ndims; idim++) {
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stat = nc_def_dim(ncid, dims[idim].name, dims[idim].size, &dimid);
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check_err(stat);
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}
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/* define variables from info in vars array */
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for (ivar = 0; ivar < nvars; ivar++) {
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stat = nc_def_var(ncid,
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vars[ivar].name,
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vars[ivar].type,
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vars[ivar].ndims,
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vars[ivar].dims,
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&varid);
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check_err(stat);
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}
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/* define attributes from info in atts array */
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for (iatt = 0; iatt < natts; iatt++) {
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varid = (atts[iatt].var == -1) ? NC_GLOBAL : atts[iatt].var;
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switch(atts[iatt].type) {
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case NC_BYTE:
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stat = nc_put_att_schar(ncid, varid, atts[iatt].name,
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atts[iatt].type, atts[iatt].len,
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(signed char *) atts[iatt].val);
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break;
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case NC_CHAR:
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stat = nc_put_att_text(ncid, varid, atts[iatt].name,
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atts[iatt].len,
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(char *) atts[iatt].val);
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break;
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case NC_SHORT:
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stat = nc_put_att_short(ncid, varid, atts[iatt].name,
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atts[iatt].type, atts[iatt].len,
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(short *) atts[iatt].val);
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break;
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case NC_INT:
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stat = nc_put_att_int(ncid, varid, atts[iatt].name,
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atts[iatt].type, atts[iatt].len,
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(int *) atts[iatt].val);
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break;
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case NC_FLOAT:
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stat = nc_put_att_float(ncid, varid, atts[iatt].name,
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atts[iatt].type, atts[iatt].len,
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(float *) atts[iatt].val);
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break;
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case NC_DOUBLE:
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stat = nc_put_att_double(ncid, varid, atts[iatt].name,
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atts[iatt].type, atts[iatt].len,
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(double *) atts[iatt].val);
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break;
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default:
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stat = NC_EBADTYPE;
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}
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check_err(stat);
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}
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if (nofill_flag) {
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stat = nc_set_fill(ncid, NC_NOFILL, 0); /* don't initialize with fill values */
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check_err(stat);
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}
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stat = nc_enddef(ncid);
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check_err(stat);
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}
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/*
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* Given a netcdf type, a pointer to a vector of values of that type,
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* and the index of the vector element desired, returns a pointer to a
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* malloced string representing the value in C.
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*/
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static char *
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cstring(
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nc_type type, /* netCDF type code */
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void *valp, /* pointer to vector of values */
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int num) /* element of vector desired */
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{
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static char *cp, *sp, ch;
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signed char *bytep;
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short *shortp;
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int *intp;
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float *floatp;
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double *doublep;
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switch (type) {
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case NC_CHAR:
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sp = cp = (char *) emalloc (7);
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*cp++ = '\'';
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ch = *((char *)valp + num);
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switch (ch) {
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case '\b': *cp++ = '\\'; *cp++ = 'b'; break;
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case '\f': *cp++ = '\\'; *cp++ = 'f'; break;
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case '\n': *cp++ = '\\'; *cp++ = 'n'; break;
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case '\r': *cp++ = '\\'; *cp++ = 'r'; break;
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case '\t': *cp++ = '\\'; *cp++ = 't'; break;
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case '\v': *cp++ = '\\'; *cp++ = 'v'; break;
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case '\\': *cp++ = '\\'; *cp++ = '\\'; break;
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case '\'': *cp++ = '\\'; *cp++ = '\''; break;
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default:
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if (!isprint((unsigned char)ch)) {
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static char octs[] = "01234567";
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int rem = ((unsigned char)ch)%64;
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*cp++ = '\\';
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*cp++ = octs[((unsigned char)ch)/64]; /* to get, e.g. '\177' */
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*cp++ = octs[rem/8];
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*cp++ = octs[rem%8];
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} else {
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*cp++ = ch;
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}
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break;
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}
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*cp++ = '\'';
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*cp = '\0';
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return sp;
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case NC_BYTE:
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cp = (char *) emalloc (7);
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bytep = (signed char *)valp;
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/* Need to convert '\377' to -1, for example, on all platforms */
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(void) sprintf(cp,"%d", (signed char) *(bytep+num));
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return cp;
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case NC_SHORT:
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cp = (char *) emalloc (10);
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shortp = (short *)valp;
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(void) sprintf(cp,"%d",* (shortp + num));
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return cp;
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case NC_INT:
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cp = (char *) emalloc (20);
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intp = (int *)valp;
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(void) sprintf(cp,"%d",* (intp + num));
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return cp;
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case NC_FLOAT:
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cp = (char *) emalloc (20);
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floatp = (float *)valp;
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(void) sprintf(cp,"%.8g",* (floatp + num));
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return cp;
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case NC_DOUBLE:
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cp = (char *) emalloc (20);
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doublep = (double *)valp;
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(void) sprintf(cp,"%.16g",* (doublep + num));
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return cp;
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default:
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derror("cstring: bad type code");
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return 0;
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}
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}
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/*
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* Generate C code for creating netCDF from in-memory structure.
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*/
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static void
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gen_c(
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const char *filename)
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{
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int idim, ivar, iatt, jatt, maxdims;
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int vector_atts;
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char *val_string;
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char stmnt[C_MAX_STMNT];
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/* wrap in main program */
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cline("#include <stdio.h>");
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cline("#include <stdlib.h>");
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cline("#include <netcdf.h>");
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cline("");
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cline("void");
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cline("check_err(const int stat, const int line, const char *file) {");
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cline(" if (stat != NC_NOERR) {");
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cline(" (void) fprintf(stderr, \"line %d of %s: %s\\n\", line, file, nc_strerror(stat));");
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cline(" exit(1);");
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cline(" }");
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cline("}");
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cline("");
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cline("int");
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sprintf(stmnt, "main() {\t\t\t/* create %s */", filename);
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cline(stmnt);
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/* create necessary declarations */
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cline("");
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cline(" int stat;\t\t\t/* return status */");
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cline(" int ncid;\t\t\t/* netCDF id */");
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if (ndims > 0) {
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cline("");
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cline(" /* dimension ids */");
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for (idim = 0; idim < ndims; idim++) {
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sprintf(stmnt, " int %s_dim;", dims[idim].lname);
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cline(stmnt);
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}
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cline("");
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cline(" /* dimension lengths */");
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for (idim = 0; idim < ndims; idim++) {
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if (dims[idim].size == NC_UNLIMITED) {
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sprintf(stmnt, " size_t %s_len = NC_UNLIMITED;",
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dims[idim].lname);
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} else {
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sprintf(stmnt, " size_t %s_len = %lu;",
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dims[idim].lname,
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(unsigned long) dims[idim].size);
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}
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cline(stmnt);
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}
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}
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maxdims = 0; /* most dimensions of any variable */
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for (ivar = 0; ivar < nvars; ivar++)
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if (vars[ivar].ndims > maxdims)
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maxdims = vars[ivar].ndims;
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if (nvars > 0) {
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cline("");
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cline(" /* variable ids */");
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for (ivar = 0; ivar < nvars; ivar++) {
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sprintf(stmnt, " int %s_id;", vars[ivar].lname);
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cline(stmnt);
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}
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cline("");
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cline(" /* rank (number of dimensions) for each variable */");
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for (ivar = 0; ivar < nvars; ivar++) {
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sprintf(stmnt, "# define RANK_%s %d", vars[ivar].lname,
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vars[ivar].ndims);
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cline(stmnt);
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}
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if (maxdims > 0) { /* we have dimensioned variables */
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cline("");
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cline(" /* variable shapes */");
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for (ivar = 0; ivar < nvars; ivar++) {
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if (vars[ivar].ndims > 0) {
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sprintf(stmnt, " int %s_dims[RANK_%s];",
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vars[ivar].lname, vars[ivar].lname);
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cline(stmnt);
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}
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}
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}
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}
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/* determine if we need any attribute vectors */
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vector_atts = 0;
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for (iatt = 0; iatt < natts; iatt++) {
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if (atts[iatt].type != NC_CHAR) {
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vector_atts = 1;
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break;
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}
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}
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if (vector_atts) {
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cline("");
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cline(" /* attribute vectors */");
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for (iatt = 0; iatt < natts; iatt++) {
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if (atts[iatt].type != NC_CHAR) {
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sprintf(stmnt,
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" %s %s_%s[%lu];",
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ncatype(atts[iatt].type),
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atts[iatt].var == -1 ? "cdf" : vars[atts[iatt].var].lname,
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atts[iatt].lname,
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(unsigned long) atts[iatt].len);
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cline(stmnt);
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}
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}
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}
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/* create netCDF file, uses NC_CLOBBER mode */
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cline("");
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cline(" /* enter define mode */");
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if (!cmode_modifier) {
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sprintf(stmnt,
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" stat = nc_create(\"%s\", NC_CLOBBER, &ncid);",
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filename);
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} else if (cmode_modifier & NC_64BIT_OFFSET) {
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sprintf(stmnt,
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" stat = nc_create(\"%s\", NC_CLOBBER|NC_64BIT_OFFSET, &ncid);",
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filename);
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#ifdef USE_NETCDF4
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} else if (cmode_modifier & NC_CLASSIC_MODEL) {
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sprintf(stmnt,
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" stat = nc_create(\"%s\", NC_CLOBBER|NC_NETCDF4|NC_CLASSIC_MODEL, &ncid);",
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filename);
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} else if (cmode_modifier & NC_NETCDF4) {
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sprintf(stmnt,
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" stat = nc_create(\"%s\", NC_CLOBBER|NC_NETCDF4, &ncid);",
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filename);
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#endif
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} else {
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derror("unknown cmode modifier");
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}
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cline(stmnt);
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cline(" check_err(stat,__LINE__,__FILE__);");
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/* define dimensions from info in dims array */
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if (ndims > 0) {
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cline("");
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cline(" /* define dimensions */");
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}
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for (idim = 0; idim < ndims; idim++) {
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sprintf(stmnt,
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" stat = nc_def_dim(ncid, \"%s\", %s_len, &%s_dim);",
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dims[idim].name, dims[idim].lname, dims[idim].lname);
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cline(stmnt);
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cline(" check_err(stat,__LINE__,__FILE__);");
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}
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/* define variables from info in vars array */
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if (nvars > 0) {
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cline("");
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cline(" /* define variables */");
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for (ivar = 0; ivar < nvars; ivar++) {
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cline("");
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for (idim = 0; idim < vars[ivar].ndims; idim++) {
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sprintf(stmnt,
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" %s_dims[%d] = %s_dim;",
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vars[ivar].lname,
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idim,
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dims[vars[ivar].dims[idim]].lname);
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cline(stmnt);
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}
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if (vars[ivar].ndims > 0) { /* a dimensioned variable */
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sprintf(stmnt,
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" stat = nc_def_var(ncid, \"%s\", %s, RANK_%s, %s_dims, &%s_id);",
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vars[ivar].name,
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nctype(vars[ivar].type),
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vars[ivar].lname,
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vars[ivar].lname,
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vars[ivar].lname);
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} else { /* a scalar */
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sprintf(stmnt,
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" stat = nc_def_var(ncid, \"%s\", %s, RANK_%s, 0, &%s_id);",
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vars[ivar].name,
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nctype(vars[ivar].type),
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vars[ivar].lname,
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vars[ivar].lname);
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}
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cline(stmnt);
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cline(" check_err(stat,__LINE__,__FILE__);");
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}
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}
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/* define attributes from info in atts array */
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if (natts > 0) {
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cline("");
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cline(" /* assign attributes */");
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for (iatt = 0; iatt < natts; iatt++) {
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if (atts[iatt].type == NC_CHAR) { /* string */
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val_string = cstrstr((char *) atts[iatt].val, atts[iatt].len);
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sprintf(stmnt,
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" stat = nc_put_att_text(ncid, %s%s, \"%s\", %lu, %s);",
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atts[iatt].var == -1 ? "NC_GLOBAL" : vars[atts[iatt].var].lname,
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atts[iatt].var == -1 ? "" : "_id",
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atts[iatt].name,
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(unsigned long) atts[iatt].len,
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val_string);
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cline(stmnt);
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free (val_string);
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}
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else { /* vector attribute */
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for (jatt = 0; jatt < atts[iatt].len ; jatt++) {
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val_string = cstring(atts[iatt].type,atts[iatt].val,jatt);
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sprintf(stmnt, " %s_%s[%d] = %s;",
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atts[iatt].var == -1 ? "cdf" : vars[atts[iatt].var].lname,
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atts[iatt].lname,
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jatt,
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val_string);
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cline(stmnt);
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free (val_string);
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}
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sprintf(stmnt,
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" stat = nc_put_att_%s(ncid, %s%s, \"%s\", %s, %lu, %s_%s);",
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ncatype(atts[iatt].type),
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atts[iatt].var == -1 ? "NC_GLOBAL" : vars[atts[iatt].var].lname,
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atts[iatt].var == -1 ? "" : "_id",
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atts[iatt].name,
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nctype(atts[iatt].type),
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(unsigned long) atts[iatt].len,
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atts[iatt].var == -1 ? "cdf" : vars[atts[iatt].var].lname,
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atts[iatt].lname);
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cline(stmnt);
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}
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cline(" check_err(stat,__LINE__,__FILE__);");
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}
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}
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if (nofill_flag) {
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cline(" /* don't initialize variables with fill values */");
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cline(" stat = nc_set_fill(ncid, NC_NOFILL, 0);");
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cline(" check_err(stat,__LINE__,__FILE__);");
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}
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cline("");
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cline(" /* leave define mode */");
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cline(" stat = nc_enddef (ncid);");
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cline(" check_err(stat,__LINE__,__FILE__);");
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}
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/* return Fortran type name for netCDF type, given type code */
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static const char *
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ncftype(
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nc_type type) /* netCDF type code */
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{
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switch (type) {
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case NC_BYTE:
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return "integer";
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case NC_CHAR:
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return "character";
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case NC_SHORT:
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return "integer";
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case NC_INT:
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#ifdef MSDOS
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return "integer*4";
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#else
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return "integer";
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#endif
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case NC_FLOAT:
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return "real";
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#if defined(_CRAY) && !defined(__crayx1)
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case NC_DOUBLE:
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return "real"; /* we don't support CRAY 128-bit doubles */
|
|
#else
|
|
case NC_DOUBLE:
|
|
return "double precision";
|
|
#endif
|
|
default:
|
|
derror("ncftype: bad type code");
|
|
return 0;
|
|
|
|
}
|
|
}
|
|
|
|
|
|
/* return Fortran type suffix for netCDF type, given type code */
|
|
const char *
|
|
nfstype(
|
|
nc_type type) /* netCDF type code */
|
|
{
|
|
switch (type) {
|
|
case NC_BYTE:
|
|
return "int1";
|
|
case NC_CHAR:
|
|
return "text";
|
|
case NC_SHORT:
|
|
return "int2";
|
|
case NC_INT:
|
|
return "int";
|
|
case NC_FLOAT:
|
|
return "real";
|
|
case NC_DOUBLE:
|
|
return "double";
|
|
default:
|
|
derror("nfstype: bad type code");
|
|
return 0;
|
|
|
|
}
|
|
}
|
|
|
|
|
|
/* Return Fortran function suffix for netCDF type, given type code.
|
|
* This should correspond to the Fortran type name in ncftype().
|
|
*/
|
|
const char *
|
|
nfftype(
|
|
nc_type type) /* netCDF type code */
|
|
{
|
|
switch (type) {
|
|
case NC_BYTE:
|
|
return "int";
|
|
case NC_CHAR:
|
|
return "text";
|
|
case NC_SHORT:
|
|
return "int";
|
|
case NC_INT:
|
|
return "int";
|
|
case NC_FLOAT:
|
|
return "real";
|
|
#if defined(_CRAY) && !defined(__crayx1)
|
|
case NC_DOUBLE:
|
|
return "real"; /* we don't support CRAY 128-bit doubles */
|
|
#else
|
|
case NC_DOUBLE:
|
|
return "double";
|
|
#endif
|
|
default:
|
|
derror("nfstype: bad type code");
|
|
return 0;
|
|
|
|
}
|
|
}
|
|
|
|
|
|
/* return FORTRAN name for netCDF type, given type code */
|
|
static const char *
|
|
ftypename(
|
|
nc_type type) /* netCDF type code */
|
|
{
|
|
switch (type) {
|
|
case NC_BYTE:
|
|
return "NF_INT1";
|
|
case NC_CHAR:
|
|
return "NF_CHAR";
|
|
case NC_SHORT:
|
|
return "NF_INT2";
|
|
case NC_INT:
|
|
return "NF_INT";
|
|
case NC_FLOAT:
|
|
return "NF_REAL";
|
|
case NC_DOUBLE:
|
|
return "NF_DOUBLE";
|
|
default:
|
|
derror("ftypename: bad type code");
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
|
|
/*
|
|
* Generate FORTRAN code for creating netCDF from in-memory structure.
|
|
*/
|
|
static void
|
|
gen_fortran(
|
|
const char *filename)
|
|
{
|
|
int idim, ivar, iatt, jatt, itype, maxdims;
|
|
int vector_atts;
|
|
char *val_string;
|
|
char stmnt[FORT_MAX_STMNT];
|
|
char s2[NC_MAX_NAME + 10];
|
|
char *sp;
|
|
/* Need how many netCDF types there are, because we create an array
|
|
* for each type of attribute. */
|
|
int ntypes = 6; /* number of netCDF types, NC_BYTE, ... */
|
|
nc_type types[6]; /* at least ntypes */
|
|
size_t max_atts[NC_DOUBLE + 1];
|
|
|
|
types[0] = NC_BYTE;
|
|
types[1] = NC_CHAR;
|
|
types[2] = NC_SHORT;
|
|
types[3] = NC_INT;
|
|
types[4] = NC_FLOAT;
|
|
types[5] = NC_DOUBLE;
|
|
|
|
fline("program fgennc");
|
|
|
|
fline("include 'netcdf.inc'");
|
|
|
|
/* create necessary declarations */
|
|
fline("* error status return");
|
|
fline("integer iret");
|
|
fline("* netCDF id");
|
|
fline("integer ncid");
|
|
if (nofill_flag) {
|
|
fline("* to save old fill mode before changing it temporarily");
|
|
fline("integer oldmode");
|
|
}
|
|
|
|
if (ndims > 0) {
|
|
fline("* dimension ids");
|
|
for (idim = 0; idim < ndims; idim++) {
|
|
sprintf(stmnt, "integer %s_dim", dims[idim].lname);
|
|
fline(stmnt);
|
|
}
|
|
|
|
fline("* dimension lengths");
|
|
for (idim = 0; idim < ndims; idim++) {
|
|
sprintf(stmnt, "integer %s_len", dims[idim].lname);
|
|
fline(stmnt);
|
|
}
|
|
for (idim = 0; idim < ndims; idim++) {
|
|
if (dims[idim].size == NC_UNLIMITED) {
|
|
sprintf(stmnt, "parameter (%s_len = NF_UNLIMITED)",
|
|
dims[idim].lname);
|
|
} else {
|
|
sprintf(stmnt, "parameter (%s_len = %lu)",
|
|
dims[idim].lname,
|
|
(unsigned long) dims[idim].size);
|
|
}
|
|
fline(stmnt);
|
|
}
|
|
|
|
}
|
|
|
|
maxdims = 0; /* most dimensions of any variable */
|
|
for (ivar = 0; ivar < nvars; ivar++)
|
|
if (vars[ivar].ndims > maxdims)
|
|
maxdims = vars[ivar].ndims;
|
|
|
|
if (nvars > 0) {
|
|
fline("* variable ids");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
sprintf(stmnt, "integer %s_id", vars[ivar].lname);
|
|
fline(stmnt);
|
|
}
|
|
|
|
fline("* rank (number of dimensions) for each variable");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
sprintf(stmnt, "integer %s_rank", vars[ivar].lname);
|
|
fline(stmnt);
|
|
}
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
sprintf(stmnt, "parameter (%s_rank = %d)", vars[ivar].lname,
|
|
vars[ivar].ndims);
|
|
fline(stmnt);
|
|
}
|
|
|
|
fline("* variable shapes");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
if (vars[ivar].ndims > 0) {
|
|
sprintf(stmnt, "integer %s_dims(%s_rank)",
|
|
vars[ivar].lname, vars[ivar].lname);
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
}
|
|
|
|
/* declarations for variables to be initialized */
|
|
if (nvars > 0) { /* we have variables */
|
|
fline("* data variables");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
/* Generate declarations here for non-record data variables only.
|
|
Record variables are declared in separate subroutine later,
|
|
when we know how big they are. */
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
continue;
|
|
}
|
|
/* Make declarations for non-text variables only;
|
|
for text variables, just include string in nf_put_var call */
|
|
if (v->type == NC_CHAR) {
|
|
continue;
|
|
}
|
|
if (v->ndims == 0) { /* scalar */
|
|
sprintf(stmnt, "%s %s", ncftype(v->type),
|
|
v->lname);
|
|
} else {
|
|
sprintf(stmnt, "%s %s(", ncftype(v->type),
|
|
v->lname);
|
|
/* reverse dimensions for FORTRAN */
|
|
for (idim = v->ndims-1; idim >= 0; idim--) {
|
|
sprintf(s2, "%s_len, ",
|
|
dims[v->dims[idim]].lname);
|
|
strcat(stmnt, s2);
|
|
}
|
|
sp = strrchr(stmnt, ',');
|
|
if(sp != NULL) {
|
|
*sp = '\0';
|
|
}
|
|
strcat(stmnt, ")");
|
|
}
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
|
|
/* determine what attribute vectors needed */
|
|
for (itype = 0; itype < ntypes; itype++)
|
|
max_atts[(int)types[itype]] = 0;
|
|
|
|
vector_atts = 0;
|
|
for (iatt = 0; iatt < natts; iatt++) {
|
|
if (atts[iatt].len > max_atts[(int) atts[iatt].type]) {
|
|
max_atts[(int)atts[iatt].type] = atts[iatt].len;
|
|
vector_atts = 1;
|
|
}
|
|
}
|
|
if (vector_atts) {
|
|
fline("* attribute vectors");
|
|
for (itype = 0; itype < ntypes; itype++) {
|
|
if (types[itype] != NC_CHAR && max_atts[(int)types[itype]] > 0) {
|
|
sprintf(stmnt, "%s %sval(%lu)", ncftype(types[itype]),
|
|
nfstype(types[itype]),
|
|
(unsigned long) max_atts[(int)types[itype]]);
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
}
|
|
|
|
/* create netCDF file, uses NC_CLOBBER mode */
|
|
fline("* enter define mode");
|
|
if (!cmode_modifier) {
|
|
sprintf(stmnt, "iret = nf_create(\'%s\', NF_CLOBBER, ncid)", filename);
|
|
} else if (cmode_modifier & NC_64BIT_OFFSET) {
|
|
sprintf(stmnt, "iret = nf_create(\'%s\', OR(NF_CLOBBER,NF_64BIT_OFFSET), ncid)", filename);
|
|
#ifdef USE_NETCDF4
|
|
} else if (cmode_modifier & NC_CLASSIC_MODEL) {
|
|
sprintf(stmnt, "iret = nf_create(\'%s\', OR(NF_CLOBBER,NC_NETCDF4,NC_CLASSIC_MODEL), ncid)", filename);
|
|
} else if (cmode_modifier & NC_NETCDF4) {
|
|
sprintf(stmnt, "iret = nf_create(\'%s\', OR(NF_CLOBBER,NF_NETCDF4), ncid)", filename);
|
|
#endif
|
|
} else {
|
|
derror("unknown cmode modifier");
|
|
}
|
|
fline(stmnt);
|
|
fline("call check_err(iret)");
|
|
|
|
/* define dimensions from info in dims array */
|
|
if (ndims > 0)
|
|
fline("* define dimensions");
|
|
for (idim = 0; idim < ndims; idim++) {
|
|
if (dims[idim].size == NC_UNLIMITED)
|
|
sprintf(stmnt, "iret = nf_def_dim(ncid, \'%s\', NF_UNLIMITED, %s_dim)",
|
|
dims[idim].name, dims[idim].lname);
|
|
else
|
|
sprintf(stmnt, "iret = nf_def_dim(ncid, \'%s\', %lu, %s_dim)",
|
|
dims[idim].name, (unsigned long) dims[idim].size,
|
|
dims[idim].lname);
|
|
fline(stmnt);
|
|
fline("call check_err(iret)");
|
|
}
|
|
|
|
/* define variables from info in vars array */
|
|
if (nvars > 0) {
|
|
fline("* define variables");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
for (idim = 0; idim < vars[ivar].ndims; idim++) {
|
|
sprintf(stmnt, "%s_dims(%d) = %s_dim",
|
|
vars[ivar].lname,
|
|
vars[ivar].ndims - idim, /* reverse dimensions */
|
|
dims[vars[ivar].dims[idim]].lname);
|
|
fline(stmnt);
|
|
}
|
|
if (vars[ivar].ndims > 0) { /* a dimensioned variable */
|
|
sprintf(stmnt,
|
|
"iret = nf_def_var(ncid, \'%s\', %s, %s_rank, %s_dims, %s_id)",
|
|
vars[ivar].name,
|
|
ftypename(vars[ivar].type),
|
|
vars[ivar].lname,
|
|
vars[ivar].lname,
|
|
vars[ivar].lname);
|
|
} else { /* a scalar */
|
|
sprintf(stmnt,
|
|
"iret = nf_def_var(ncid, \'%s\', %s, %s_rank, 0, %s_id)",
|
|
vars[ivar].name,
|
|
ftypename(vars[ivar].type),
|
|
vars[ivar].lname,
|
|
vars[ivar].lname);
|
|
}
|
|
fline(stmnt);
|
|
fline("call check_err(iret)");
|
|
}
|
|
}
|
|
|
|
/* define attributes from info in atts array */
|
|
if (natts > 0) {
|
|
fline("* assign attributes");
|
|
for (iatt = 0; iatt < natts; iatt++) {
|
|
if (atts[iatt].type == NC_CHAR) { /* string */
|
|
val_string = fstrstr((char *) atts[iatt].val, atts[iatt].len);
|
|
sprintf(stmnt,
|
|
"iret = nf_put_att_text(ncid, %s%s, \'%s\', %lu, %s)",
|
|
atts[iatt].var == -1 ? "NF_GLOBAL" : vars[atts[iatt].var].lname,
|
|
atts[iatt].var == -1 ? "" : "_id",
|
|
atts[iatt].name,
|
|
(unsigned long) atts[iatt].len,
|
|
val_string);
|
|
fline(stmnt);
|
|
fline("call check_err(iret)");
|
|
free(val_string);
|
|
} else {
|
|
for (jatt = 0; jatt < atts[iatt].len ; jatt++) {
|
|
val_string = fstring(atts[iatt].type,atts[iatt].val,jatt);
|
|
sprintf(stmnt, "%sval(%d) = %s",
|
|
nfstype(atts[iatt].type),
|
|
jatt+1,
|
|
val_string);
|
|
fline(stmnt);
|
|
free (val_string);
|
|
}
|
|
|
|
sprintf(stmnt,
|
|
"iret = nf_put_att_%s(ncid, %s%s, \'%s\', %s, %lu, %sval)",
|
|
nfftype(atts[iatt].type),
|
|
atts[iatt].var == -1 ? "NCGLOBAL" : vars[atts[iatt].var].lname,
|
|
atts[iatt].var == -1 ? "" : "_id",
|
|
atts[iatt].name,
|
|
ftypename(atts[iatt].type),
|
|
(unsigned long) atts[iatt].len,
|
|
nfstype(atts[iatt].type));
|
|
fline(stmnt);
|
|
fline("call check_err(iret)");
|
|
}
|
|
}
|
|
}
|
|
|
|
if (nofill_flag) {
|
|
fline("* don't initialize variables with fill values");
|
|
fline("iret = nf_set_fill(ncid, NF_NOFILL, oldmode)");
|
|
fline("call check_err(iret)");
|
|
}
|
|
|
|
fline("* leave define mode");
|
|
fline("iret = nf_enddef(ncid)");
|
|
fline("call check_err(iret)");
|
|
}
|
|
|
|
|
|
/*
|
|
* Output a C statement.
|
|
*/
|
|
void
|
|
cline(
|
|
const char *stmnt)
|
|
{
|
|
FILE *cout = stdout;
|
|
|
|
fputs(stmnt, cout);
|
|
fputs("\n", cout);
|
|
}
|
|
|
|
/*
|
|
* From a long line FORTRAN statement, generates the necessary FORTRAN
|
|
* lines with continuation characters in column 6. If stmnt starts with "*",
|
|
* it is treated as a one-line comment. Statement labels are *not* handled,
|
|
* but since we don't generate any labels, we don't care.
|
|
*/
|
|
void
|
|
fline(
|
|
const char *stmnt)
|
|
{
|
|
FILE *fout = stdout;
|
|
int len = (int) strlen(stmnt);
|
|
int line = 0;
|
|
static char cont[] = { /* continuation characters */
|
|
' ', '1', '2', '3', '4', '5', '6', '7', '8', '9',
|
|
'+', '1', '2', '3', '4', '5', '6', '7', '8', '9',
|
|
'+', '1', '2', '3', '4', '5', '6', '7', '8', '9'};
|
|
|
|
if(stmnt[0] == '*') {
|
|
fputs(stmnt, fout);
|
|
fputs("\n", fout);
|
|
return;
|
|
}
|
|
|
|
while (len > 0) {
|
|
if (line >= FORT_MAX_LINES)
|
|
derror("FORTRAN statement too long: %s",stmnt);
|
|
(void) fprintf(fout, " %c", cont[line++]);
|
|
(void) fprintf(fout, "%.66s\n", stmnt);
|
|
len -= 66;
|
|
if (len > 0)
|
|
stmnt += 66;
|
|
}
|
|
}
|
|
|
|
|
|
/* return C name for netCDF type, given type code */
|
|
const char *
|
|
nctype(
|
|
nc_type type) /* netCDF type code */
|
|
{
|
|
switch (type) {
|
|
case NC_BYTE:
|
|
return "NC_BYTE";
|
|
case NC_CHAR:
|
|
return "NC_CHAR";
|
|
case NC_SHORT:
|
|
return "NC_SHORT";
|
|
case NC_INT:
|
|
return "NC_INT";
|
|
case NC_FLOAT:
|
|
return "NC_FLOAT";
|
|
case NC_DOUBLE:
|
|
return "NC_DOUBLE";
|
|
default:
|
|
derror("nctype: bad type code");
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
|
|
/*
|
|
* Return C type name for netCDF type, given type code.
|
|
*/
|
|
const char *
|
|
ncctype(
|
|
nc_type type) /* netCDF type code */
|
|
{
|
|
switch (type) {
|
|
case NC_BYTE:
|
|
return "signed char";
|
|
case NC_CHAR:
|
|
return "char";
|
|
case NC_SHORT:
|
|
return "short";
|
|
case NC_INT:
|
|
return "int";
|
|
case NC_FLOAT:
|
|
return "float";
|
|
case NC_DOUBLE:
|
|
return "double";
|
|
default:
|
|
derror("ncctype: bad type code");
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
|
|
|
|
/*
|
|
* Return C type name for netCDF type suffix, given type code.
|
|
*/
|
|
const char *
|
|
ncstype(
|
|
nc_type type) /* netCDF type code */
|
|
{
|
|
switch (type) {
|
|
case NC_BYTE:
|
|
return "schar";
|
|
case NC_CHAR:
|
|
return "text";
|
|
case NC_SHORT:
|
|
return "short";
|
|
case NC_INT:
|
|
return "int";
|
|
case NC_FLOAT:
|
|
return "float";
|
|
case NC_DOUBLE:
|
|
return "double";
|
|
default:
|
|
derror("ncstype: bad type code");
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
|
|
/*
|
|
* Return C type name for netCDF attribute container type, given type code.
|
|
*/
|
|
const char *
|
|
ncatype(
|
|
nc_type type) /* netCDF type code */
|
|
{
|
|
switch (type) {
|
|
case NC_BYTE:
|
|
return "int"; /* avoids choosing between uchar and schar */
|
|
case NC_CHAR:
|
|
return "text";
|
|
case NC_SHORT:
|
|
return "short";
|
|
case NC_INT:
|
|
return "int";
|
|
case NC_FLOAT:
|
|
return "float";
|
|
case NC_DOUBLE:
|
|
return "double";
|
|
default:
|
|
derror("ncatype: bad type code");
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
|
|
/* return internal size for values of specified netCDF type */
|
|
size_t
|
|
nctypesize(
|
|
nc_type type) /* netCDF type code */
|
|
{
|
|
switch (type) {
|
|
case NC_BYTE:
|
|
return sizeof(char);
|
|
case NC_CHAR:
|
|
return sizeof(char);
|
|
case NC_SHORT:
|
|
return sizeof(short);
|
|
case NC_INT:
|
|
return sizeof(int);
|
|
case NC_FLOAT:
|
|
return sizeof(float);
|
|
case NC_DOUBLE:
|
|
return sizeof(double);
|
|
default:
|
|
derror("nctypesize: bad type code");
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
|
|
/*
|
|
* Given a netcdf numeric type, a pointer to a vector of values of that
|
|
* type, and the index of the vector element desired, returns a pointer
|
|
* to a malloced string representing the value in FORTRAN. Since this
|
|
* may be used in a DATA statement, it must not include non-constant
|
|
* expressions, such as "char(26)".
|
|
*/
|
|
char *
|
|
fstring(
|
|
nc_type type, /* netCDF type code */
|
|
void *valp, /* pointer to vector of values */
|
|
int num) /* element of vector desired */
|
|
{
|
|
static char *cp;
|
|
signed char *schp;
|
|
short *shortp;
|
|
int *intp;
|
|
float *floatp;
|
|
double *doublep;
|
|
|
|
switch (type) {
|
|
case NC_BYTE:
|
|
cp = (char *) emalloc (10);
|
|
schp = (signed char *)valp;
|
|
sprintf(cp,"%d", schp[num]);
|
|
return cp;
|
|
|
|
case NC_SHORT:
|
|
cp = (char *) emalloc (10);
|
|
shortp = (short *)valp;
|
|
(void) sprintf(cp,"%d",* (shortp + num));
|
|
return cp;
|
|
|
|
case NC_INT:
|
|
cp = (char *) emalloc (20);
|
|
intp = (int *)valp;
|
|
(void) sprintf(cp,"%d",* (intp + num));
|
|
return cp;
|
|
|
|
case NC_FLOAT:
|
|
cp = (char *) emalloc (20);
|
|
floatp = (float *)valp;
|
|
(void) sprintf(cp,"%.8g",* (floatp + num));
|
|
return cp;
|
|
|
|
case NC_DOUBLE:
|
|
cp = (char *) emalloc (25);
|
|
doublep = (double *)valp;
|
|
(void) sprintf(cp,"%.16g",* (doublep + num));
|
|
expe2d(cp); /* change 'e' to 'd' in exponent */
|
|
return cp;
|
|
|
|
default:
|
|
derror("fstring: bad type code");
|
|
return 0;
|
|
}
|
|
}
|
|
|
|
|
|
/*
|
|
* Given a pointer to a counted string, returns a pointer to a malloced string
|
|
* representing the string as a C constant.
|
|
*/
|
|
char *
|
|
cstrstr(
|
|
const char *valp, /* pointer to vector of characters*/
|
|
size_t len) /* number of characters in valp */
|
|
{
|
|
static char *sp;
|
|
char *cp;
|
|
char *istr, *istr0; /* for null-terminated copy */
|
|
int ii;
|
|
|
|
if(4*len+3 != (unsigned)(4*len+3)) {
|
|
derror("too much character data!");
|
|
exit(9);
|
|
}
|
|
sp = cp = (char *) emalloc(4*len+3);
|
|
|
|
if(len == 1 && *valp == 0) { /* empty string */
|
|
strcpy(sp,"\"\"");
|
|
return sp;
|
|
}
|
|
|
|
istr0 = istr = (char *) emalloc(len + 1);
|
|
for(ii = 0; ii < len; ii++) {
|
|
istr[ii] = valp[ii];
|
|
}
|
|
istr[len] = '\0';
|
|
|
|
*cp++ = '"';
|
|
for(ii = 0; ii < len; ii++) {
|
|
switch (*istr) {
|
|
case '\0': *cp++ = '\\'; *cp++ = '0'; *cp++ = '0'; *cp++ = '0'; break;
|
|
case '\b': *cp++ = '\\'; *cp++ = 'b'; break;
|
|
case '\f': *cp++ = '\\'; *cp++ = 'f'; break;
|
|
case '\n': *cp++ = '\\'; *cp++ = 'n'; break;
|
|
case '\r': *cp++ = '\\'; *cp++ = 'r'; break;
|
|
case '\t': *cp++ = '\\'; *cp++ = 't'; break;
|
|
case '\v': *cp++ = '\\'; *cp++ = 'v'; break;
|
|
case '\\': *cp++ = '\\'; *cp++ = '\\'; break;
|
|
case '\"': *cp++ = '\\'; *cp++ = '\"'; break;
|
|
default:
|
|
if (!isprint((unsigned char)*istr)) {
|
|
static char octs[] = "01234567";
|
|
int rem = ((unsigned char)*istr)%64;
|
|
*cp++ = '\\';
|
|
*cp++ = octs[((unsigned char)*istr)/64]; /* to get, e.g. '\177' */
|
|
*cp++ = octs[rem/8];
|
|
*cp++ = octs[rem%8];
|
|
} else {
|
|
*cp++ = *istr;
|
|
}
|
|
break;
|
|
}
|
|
istr++;
|
|
}
|
|
*cp++ = '"';
|
|
*cp = '\0';
|
|
free(istr0);
|
|
return sp;
|
|
}
|
|
|
|
|
|
/* Given a pointer to a counted string (not necessarily
|
|
* null-terminated), returns a pointer to a malloced string representing
|
|
* the string as a FORTRAN string expression. For example, the string
|
|
* "don't" would yield the FORTRAN string "'don''t'", and the string
|
|
* "ab\ncd" would yield "'ab'//char(10)//'cd'". The common
|
|
* interpretation of "\"-escaped characters is non-standard, so the
|
|
* generated Fortran may require adjustment in compilers that don't
|
|
* recognize "\" as anything special in a character context. */
|
|
char *
|
|
fstrstr(
|
|
const char *str, /* pointer to vector of characters */
|
|
size_t ilen) /* number of characters in istr */
|
|
{
|
|
static char *ostr;
|
|
char *cp, tstr[12];
|
|
int was_print = 0; /* true if last character was printable */
|
|
char *istr, *istr0; /* for null-terminated copy */
|
|
int ii;
|
|
|
|
if(12*ilen != (size_t)(12*ilen)) {
|
|
derror("too much character data!");
|
|
exit(9);
|
|
}
|
|
istr0 = istr = (char *) emalloc(ilen + 1);
|
|
for(ii = 0; ii < ilen; ii++) {
|
|
istr[ii] = str[ii];
|
|
}
|
|
istr[ilen] = '\0';
|
|
|
|
if (*istr == '\0') { /* empty string input, not legal in FORTRAN */
|
|
ostr = (char*) emalloc(strlen("char(0)") + 1);
|
|
strcpy(ostr, "char(0)");
|
|
free(istr0);
|
|
return ostr;
|
|
}
|
|
ostr = cp = (char *) emalloc(12*ilen);
|
|
*ostr = '\0';
|
|
if (isprint((unsigned char)*istr)) { /* handle first character in input */
|
|
*cp++ = '\'';
|
|
switch (*istr) {
|
|
case '\'':
|
|
*cp++ = '\'';
|
|
*cp++ = '\'';
|
|
break;
|
|
case '\\':
|
|
*cp++ = '\\';
|
|
*cp++ = '\\';
|
|
break;
|
|
default:
|
|
*cp++ = *istr;
|
|
break;
|
|
}
|
|
*cp = '\0';
|
|
was_print = 1;
|
|
} else {
|
|
sprintf(tstr, "char(%d)", (unsigned char)*istr);
|
|
strcat(cp, tstr);
|
|
cp += strlen(tstr);
|
|
was_print = 0;
|
|
}
|
|
istr++;
|
|
|
|
for(ii = 1; ii < ilen; ii++) { /* handle subsequent characters in input */
|
|
if (isprint((unsigned char)*istr)) {
|
|
if (! was_print) {
|
|
strcat(cp, "//'");
|
|
cp += 3;
|
|
}
|
|
switch (*istr) {
|
|
case '\'':
|
|
*cp++ = '\'';
|
|
*cp++ = '\'';
|
|
break;
|
|
case '\\':
|
|
*cp++ = '\\';
|
|
*cp++ = '\\';
|
|
break;
|
|
default:
|
|
*cp++ = *istr;
|
|
break;
|
|
}
|
|
*cp = '\0';
|
|
was_print = 1;
|
|
} else {
|
|
if (was_print) {
|
|
*cp++ = '\'';
|
|
*cp = '\0';
|
|
}
|
|
sprintf(tstr, "//char(%d)", (unsigned char)*istr);
|
|
strcat(cp, tstr);
|
|
cp += strlen(tstr);
|
|
was_print = 0;
|
|
}
|
|
istr++;
|
|
}
|
|
if (was_print)
|
|
*cp++ = '\'';
|
|
*cp = '\0';
|
|
free(istr0);
|
|
return ostr;
|
|
}
|
|
|
|
|
|
static void
|
|
cl_netcdf(void)
|
|
{
|
|
int stat = nc_close(ncid);
|
|
check_err(stat);
|
|
}
|
|
|
|
|
|
static void
|
|
cl_c(void)
|
|
{
|
|
cline(" stat = nc_close(ncid);");
|
|
cline(" check_err(stat,__LINE__,__FILE__);");
|
|
#ifndef vms
|
|
cline(" return 0;");
|
|
#else
|
|
cline(" return 1;");
|
|
#endif
|
|
cline("}");
|
|
}
|
|
|
|
/* Returns true if dimension used in at least one record variable,
|
|
otherwise false. This is an inefficient algorithm, but we don't call
|
|
it very often ... */
|
|
static int
|
|
used_in_rec_var(
|
|
int idim /* id of dimension */
|
|
) {
|
|
int ivar;
|
|
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
if (vars[ivar].ndims > 0 && vars[ivar].dims[0] == rec_dim) {
|
|
int jdim;
|
|
for (jdim = 0; jdim < vars[ivar].ndims; jdim++) {
|
|
if (vars[ivar].dims[jdim] == idim)
|
|
return 1;
|
|
}
|
|
}
|
|
}
|
|
return 0;
|
|
}
|
|
|
|
|
|
/* Return name for Fortran fill constant of specified type */
|
|
static const char *
|
|
f_fill_name(
|
|
nc_type type
|
|
)
|
|
{
|
|
switch(type) {
|
|
case NC_BYTE:
|
|
return "NF_FILL_BYTE";
|
|
case NC_CHAR:
|
|
return "NF_FILL_CHAR";
|
|
case NC_SHORT:
|
|
return "NF_FILL_SHORT";
|
|
case NC_INT:
|
|
return "NF_FILL_INT";
|
|
case NC_FLOAT:
|
|
return "NF_FILL_FLOAT";
|
|
case NC_DOUBLE:
|
|
return "NF_FILL_DOUBLE";
|
|
default: break;
|
|
}
|
|
derror("f_fill_name: bad type code");
|
|
return 0;
|
|
}
|
|
|
|
|
|
/* Generate Fortran for cleaning up and closing file */
|
|
static void
|
|
cl_fortran(void)
|
|
{
|
|
int ivar;
|
|
int idim;
|
|
char stmnt[FORT_MAX_STMNT];
|
|
char s2[FORT_MAX_STMNT];
|
|
char*sp;
|
|
int have_rec_var = 0;
|
|
|
|
/* do we have any record variables? */
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
have_rec_var = 1;
|
|
break;
|
|
}
|
|
}
|
|
|
|
if (have_rec_var) {
|
|
fline(" ");
|
|
fline("* Write record variables");
|
|
sprintf(stmnt, "call writerecs(ncid,");
|
|
/* generate parameter list for subroutine to write record vars */
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
/* if a record variable, include id in parameter list */
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
sprintf(s2, "%s_id,", v->lname);
|
|
strcat(stmnt, s2);
|
|
}
|
|
}
|
|
sp = strrchr(stmnt, ',');
|
|
if(sp != NULL) {
|
|
*sp = '\0';
|
|
}
|
|
strcat(stmnt, ")");
|
|
fline(stmnt);
|
|
}
|
|
|
|
fline(" ");
|
|
fline("iret = nf_close(ncid)");
|
|
fline("call check_err(iret)");
|
|
fline("end");
|
|
|
|
fline(" ");
|
|
|
|
if (have_rec_var) {
|
|
sprintf(stmnt, "subroutine writerecs(ncid,");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
sprintf(s2, "%s_id,", v->lname);
|
|
strcat(stmnt, s2);
|
|
}
|
|
}
|
|
sp = strrchr(stmnt, ',');
|
|
if(sp != NULL) {
|
|
*sp = '\0';
|
|
}
|
|
strcat(stmnt, ")");
|
|
fline(stmnt);
|
|
fline(" ");
|
|
fline("* netCDF id");
|
|
fline("integer ncid");
|
|
|
|
fline("* variable ids");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
sprintf(stmnt, "integer %s_id", v->lname);
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
|
|
fline(" ");
|
|
fline("include 'netcdf.inc'");
|
|
|
|
/* create necessary declarations */
|
|
fline("* error status return");
|
|
fline("integer iret");
|
|
|
|
/* generate integer/parameter declarations for all dimensions
|
|
used in record variables, except record dimension. */
|
|
fline(" ");
|
|
fline("* netCDF dimension sizes for dimensions used with record variables");
|
|
for (idim = 0; idim < ndims; idim++) {
|
|
/* if used in a record variable and not record dimension */
|
|
if (used_in_rec_var(idim) && dims[idim].size != NC_UNLIMITED) {
|
|
sprintf(stmnt, "integer %s_len", dims[idim].lname);
|
|
fline(stmnt);
|
|
sprintf(stmnt, "parameter (%s_len = %lu)",
|
|
dims[idim].lname, (unsigned long) dims[idim].size);
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
|
|
fline(" ");
|
|
fline("* rank (number of dimensions) for each variable");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
sprintf(stmnt, "integer %s_rank", v->lname);
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
sprintf(stmnt, "parameter (%s_rank = %d)", v->lname,
|
|
v->ndims);
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
|
|
fline("* starts and counts for array sections of record variables");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
sprintf(stmnt,
|
|
"integer %s_start(%s_rank), %s_count(%s_rank)",
|
|
v->lname, v->lname, v->lname, v->lname);
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
|
|
fline(" ");
|
|
fline("* data variables");
|
|
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
char *sp;
|
|
|
|
fline(" ");
|
|
sprintf(stmnt, "integer %s_nr", v->lname);
|
|
fline(stmnt);
|
|
if (v->nrecs > 0) {
|
|
sprintf(stmnt, "parameter (%s_nr = %lu)",
|
|
v->lname, (unsigned long) v->nrecs);
|
|
} else {
|
|
sprintf(stmnt, "parameter (%s_nr = 1)",
|
|
v->lname);
|
|
}
|
|
fline(stmnt);
|
|
if (v->type != NC_CHAR) {
|
|
sprintf(stmnt, "%s %s(", ncftype(v->type),
|
|
v->lname);
|
|
/* reverse dimensions for FORTRAN */
|
|
for (idim = v->ndims-1; idim >= 0; idim--) {
|
|
if(v->dims[idim] == rec_dim) {
|
|
sprintf(s2, "%s_nr, ", v->lname);
|
|
} else {
|
|
sprintf(s2, "%s_len, ",
|
|
dims[v->dims[idim]].lname);
|
|
}
|
|
strcat(stmnt, s2);
|
|
}
|
|
sp = strrchr(stmnt, ',');
|
|
if(sp != NULL) {
|
|
*sp = '\0';
|
|
}
|
|
strcat(stmnt, ")");
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
}
|
|
|
|
fline(" ");
|
|
|
|
/* Emit DATA statements after declarations, because f2c on Linux can't
|
|
handle interspersing them */
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim && v->type != NC_CHAR) {
|
|
if (v->has_data) {
|
|
fline(v->data_stmnt);
|
|
} else { /* generate data statement for FILL record */
|
|
size_t rec_len = 1;
|
|
for (idim = 1; idim < v->ndims; idim++) {
|
|
rec_len *= dims[v->dims[idim]].size;
|
|
}
|
|
sprintf(stmnt,"data %s /%lu * %s/", v->lname,
|
|
(unsigned long) rec_len,
|
|
f_fill_name(v->type));
|
|
fline(stmnt);
|
|
}
|
|
}
|
|
}
|
|
fline(" ");
|
|
for (ivar = 0; ivar < nvars; ivar++) {
|
|
struct vars *v = &vars[ivar];
|
|
/* if a record variable, declare starts and counts */
|
|
if (v->ndims > 0 && v->dims[0] == rec_dim) {
|
|
if (!v->has_data)
|
|
continue;
|
|
sprintf(stmnt, "* store %s", v->name);
|
|
fline(stmnt);
|
|
|
|
for (idim = 0; idim < v->ndims; idim++) {
|
|
sprintf(stmnt, "%s_start(%d) = 1", v->lname, idim+1);
|
|
fline(stmnt);
|
|
}
|
|
for (idim = v->ndims-1; idim > 0; idim--) {
|
|
sprintf(stmnt, "%s_count(%d) = %s_len", v->lname,
|
|
v->ndims - idim, dims[v->dims[idim]].lname);
|
|
fline(stmnt);
|
|
}
|
|
sprintf(stmnt, "%s_count(%d) = %s_nr", v->lname,
|
|
v->ndims, v->lname);
|
|
fline(stmnt);
|
|
|
|
if (v->type != NC_CHAR) {
|
|
sprintf(stmnt,
|
|
"iret = nf_put_vara_%s(ncid, %s_id, %s_start, %s_count, %s)",
|
|
nfftype(v->type), v->lname, v->lname, v->lname, v->lname);
|
|
} else {
|
|
sprintf(stmnt,
|
|
"iret = nf_put_vara_%s(ncid, %s_id, %s_start, %s_count, %s)",
|
|
nfftype(v->type), v->lname, v->lname, v->lname,
|
|
v->data_stmnt);
|
|
}
|
|
|
|
fline(stmnt);
|
|
fline("call check_err(iret)");
|
|
}
|
|
}
|
|
|
|
fline(" ");
|
|
|
|
fline("end");
|
|
|
|
fline(" ");
|
|
}
|
|
|
|
fline("subroutine check_err(iret)");
|
|
fline("integer iret");
|
|
fline("include 'netcdf.inc'");
|
|
fline("if (iret .ne. NF_NOERR) then");
|
|
fline("print *, nf_strerror(iret)");
|
|
fline("stop");
|
|
fline("endif");
|
|
fline("end");
|
|
}
|
|
|
|
|
|
/* invoke netcdf calls (or generate C or Fortran code) to create netcdf
|
|
* from in-memory structure. */
|
|
void
|
|
define_netcdf(
|
|
const char *netcdfname)
|
|
{
|
|
char *filename; /* output file name */
|
|
|
|
if (netcdf_name) { /* name given on command line */
|
|
filename = netcdf_name;
|
|
} else { /* construct name from CDL name */
|
|
filename = (char *) emalloc(strlen(netcdfname) + 5);
|
|
(void) strcpy(filename,netcdfname);
|
|
if (netcdf_flag == -1)
|
|
(void) strcat(filename,".cdf"); /* old, deprecated extension */
|
|
else
|
|
(void) strcat(filename,".nc"); /* new, favored extension */
|
|
}
|
|
if (netcdf_flag)
|
|
gen_netcdf(filename); /* create netcdf */
|
|
if (c_flag) /* create C code to create netcdf */
|
|
gen_c(filename);
|
|
if (fortran_flag) /* create Fortran code to create netcdf */
|
|
gen_fortran(filename);
|
|
free(filename);
|
|
}
|
|
|
|
|
|
void
|
|
close_netcdf(void)
|
|
{
|
|
if (netcdf_flag)
|
|
cl_netcdf(); /* close netcdf */
|
|
if (c_flag) /* create C code to close netcdf */
|
|
cl_c();
|
|
if (fortran_flag) /* create Fortran code to close netcdf */
|
|
cl_fortran();
|
|
}
|
|
|
|
|
|
void
|
|
check_err(int stat) {
|
|
if (stat != NC_NOERR) {
|
|
fprintf(stderr, "ncgen: %s\n", nc_strerror(stat));
|
|
derror_count++;
|
|
}
|
|
}
|
|
|
|
/*
|
|
* For logging error conditions.
|
|
*/
|
|
#ifndef NO_STDARG
|
|
void
|
|
derror(const char *fmt, ...)
|
|
#else
|
|
/*VARARGS1*/
|
|
void
|
|
derror(fmt, va_alist)
|
|
const char *fmt ; /* error-message printf-style format */
|
|
va_dcl /* variable number of error args, if any */
|
|
#endif /* !NO_STDARG */
|
|
{
|
|
va_list args ;
|
|
|
|
|
|
if (lineno == 1)
|
|
(void) fprintf(stderr,"%s: %s: ", progname, cdlname);
|
|
else
|
|
(void) fprintf(stderr,"%s: %s line %d: ", progname, cdlname, lineno);
|
|
|
|
#ifndef NO_STDARG
|
|
va_start(args ,fmt) ;
|
|
#else
|
|
va_start(args) ;
|
|
#endif /* !NO_STDARG */
|
|
|
|
(void) vfprintf(stderr,fmt,args) ;
|
|
va_end(args) ;
|
|
|
|
(void) fputc('\n',stderr) ;
|
|
(void) fflush(stderr); /* to ensure log files are current */
|
|
derror_count++;
|
|
}
|
|
|
|
|
|
void *
|
|
emalloc ( /* check return from malloc */
|
|
size_t size)
|
|
{
|
|
void *p;
|
|
|
|
p = (void *) malloc (size);
|
|
if (p == 0) {
|
|
derror ("out of memory\n");
|
|
exit(3);
|
|
}
|
|
return p;
|
|
}
|
|
|
|
void *
|
|
ecalloc ( /* check return from calloc */
|
|
size_t size)
|
|
{
|
|
void *p;
|
|
|
|
p = (void *) calloc (size, 1);
|
|
if (p == 0) {
|
|
derror ("out of memory\n");
|
|
exit(3);
|
|
}
|
|
return p;
|
|
}
|
|
|
|
void *
|
|
erealloc ( /* check return from realloc */
|
|
void *ptr,
|
|
size_t size) /* if 0, this is really a free */
|
|
{
|
|
void *p;
|
|
|
|
p = (void *) realloc (ptr, size);
|
|
|
|
if (p == 0 && size != 0) {
|
|
derror ("out of memory");
|
|
exit(3);
|
|
}
|
|
return p;
|
|
}
|
|
|
|
|
|
/*
|
|
* For generated Fortran, change 'e' to 'd' in exponent of double precision
|
|
* constants.
|
|
*/
|
|
void
|
|
expe2d(
|
|
char *cp) /* string containing double constant */
|
|
{
|
|
char *expchar = strrchr(cp,'e');
|
|
if (expchar) {
|
|
*expchar = 'd';
|
|
}
|
|
}
|
|
|
|
|
|
|
|
/* Returns non-zero if n is a power of 2, 0 otherwise */
|
|
static
|
|
int
|
|
pow2(
|
|
int n)
|
|
{
|
|
int m = n;
|
|
int p = 1;
|
|
|
|
while (m > 0) {
|
|
m /= 2;
|
|
p *= 2;
|
|
}
|
|
return p == 2*n;
|
|
}
|
|
|
|
|
|
/*
|
|
* Grow an integer array as necessary.
|
|
*
|
|
* Assumption: nar never incremented by more than 1 from last call.
|
|
*
|
|
* Makes sure an array is within a factor of 2 of the size needed.
|
|
*
|
|
* Make sure *arpp points to enough space to hold nar integers. If not big
|
|
* enough, malloc more space, copy over existing stuff, free old. When
|
|
* called for first time, *arpp assumed to be uninitialized.
|
|
*/
|
|
void
|
|
grow_iarray(
|
|
int nar, /* array must be at least this big */
|
|
int **arpp) /* address of start of int array */
|
|
{
|
|
if (nar == 0) {
|
|
*arpp = (int *) emalloc(1 * sizeof(int));
|
|
return;
|
|
}
|
|
if (! pow2(nar)) /* return unless nar is a power of two */
|
|
return;
|
|
*arpp = (int *) erealloc(*arpp, 2 * nar * sizeof(int));
|
|
}
|
|
|
|
|
|
/*
|
|
* Grow an array of variables as necessary.
|
|
*
|
|
* Assumption: nar never incremented by more than 1 from last call.
|
|
*
|
|
* Makes sure array is within a factor of 2 of the size needed.
|
|
*
|
|
* Make sure *arpp points to enough space to hold nar variables. If not big
|
|
* enough, malloc more space, copy over existing stuff, free old. When
|
|
* called for first time, *arpp assumed to be uninitialized.
|
|
*/
|
|
void
|
|
grow_varray(
|
|
int nar, /* array must be at least this big */
|
|
struct vars **arpp) /* address of start of var array */
|
|
{
|
|
if (nar == 0) {
|
|
*arpp = (struct vars *) emalloc(1 * sizeof(struct vars));
|
|
return;
|
|
}
|
|
if (! pow2(nar)) /* return unless nar is a power of two */
|
|
return;
|
|
*arpp = (struct vars *) erealloc(*arpp, 2 * nar * sizeof(struct vars));
|
|
}
|
|
|
|
|
|
/*
|
|
* Grow an array of dimensions as necessary.
|
|
*
|
|
* Assumption: nar never incremented by more than 1 from last call.
|
|
*
|
|
* Makes sure array is within a factor of 2 of the size needed.
|
|
*
|
|
* Make sure *arpp points to enough space to hold nar dimensions. If not big
|
|
* enough, malloc more space, copy over existing stuff, free old. When
|
|
* called for first time, *arpp assumed to be uninitialized.
|
|
*/
|
|
void
|
|
grow_darray(
|
|
int nar, /* array must be at least this big */
|
|
struct dims **arpp) /* address of start of var array */
|
|
{
|
|
if (nar == 0) {
|
|
*arpp = (struct dims *) emalloc(1 * sizeof(struct dims));
|
|
return;
|
|
}
|
|
if (! pow2(nar)) /* return unless nar is a power of two */
|
|
return;
|
|
*arpp = (struct dims *) erealloc(*arpp, 2 * nar * sizeof(struct dims));
|
|
}
|
|
|
|
|
|
/*
|
|
* Grow an array of attributes as necessary.
|
|
*
|
|
* Assumption: nar never incremented by more than 1 from last call.
|
|
*
|
|
* Makes sure array is within a factor of 2 of the size needed.
|
|
*
|
|
* Make sure *arpp points to enough space to hold nar attributes. If not big
|
|
* enough, malloc more space, copy over existing stuff, free old. When
|
|
* called for first time, *arpp assumed to be uninitialized.
|
|
*/
|
|
void
|
|
grow_aarray(
|
|
int nar, /* array must be at least this big */
|
|
struct atts **arpp) /* address of start of var array */
|
|
{
|
|
if (nar == 0) {
|
|
*arpp = (struct atts *) emalloc(1 * sizeof(struct atts));
|
|
return;
|
|
}
|
|
if (! pow2(nar)) /* return unless nar is a power of two */
|
|
return;
|
|
*arpp = (struct atts *) erealloc(*arpp, 2 * nar * sizeof(struct atts));
|
|
}
|
|
|
|
|
|
/*
|
|
* Replace special chars in name so it can be used in C and Fortran
|
|
* variable names without causing syntax errors. Here we just replace
|
|
* each "-" in a name with "_MINUS_", each "." with "_PERIOD_", etc.
|
|
* For bytes with high bit set, from UTF-8 encoding of Unicode, just
|
|
* replace with "_xHH", where each H is the appropriate hex digit. If
|
|
* a name begins with a number N, such as "4LFTX", replace with
|
|
* "DIGIT_N_", such as "DIGIT_4_LFTX".
|
|
*
|
|
* Returned name is malloc'ed, so caller is responsible for freeing it.
|
|
*/
|
|
extern char*
|
|
decodify (
|
|
const char *name)
|
|
{
|
|
int count; /* number chars in newname */
|
|
char *newname;
|
|
const char *cp;
|
|
char *sp;
|
|
static int init = 0;
|
|
static char* repls[256]; /* replacement string for each char */
|
|
static int lens[256]; /* lengths of replacement strings */
|
|
static struct {
|
|
char c;
|
|
char *s;
|
|
} ctable[] = {
|
|
{' ', "_SPACE_"},
|
|
{'!', "_EXCLAMATION_"},
|
|
{'"', "_QUOTATION_"},
|
|
{'#', "_HASH_"},
|
|
{'$', "_DOLLAR_"},
|
|
{'%', "_PERCENT_"},
|
|
{'&', "_AMPERSAND_"},
|
|
{'\'', "_APOSTROPHE_"},
|
|
{'(', "_LEFTPAREN_"},
|
|
{')', "_RIGHTPAREN_"},
|
|
{'*', "_ASTERISK_"},
|
|
{'+', "_PLUS_"},
|
|
{',', "_COMMA_"},
|
|
{'-', "_MINUS_"},
|
|
{'.', "_PERIOD_"},
|
|
{':', "_COLON_"},
|
|
{';', "_SEMICOLON_"},
|
|
{'<', "_LESSTHAN_"},
|
|
{'=', "_EQUALS_"},
|
|
{'>', "_GREATERTHAN_"},
|
|
{'?', "_QUESTION_"},
|
|
{'@', "_ATSIGN_"},
|
|
{'[', "_LEFTBRACKET_"},
|
|
{'\\', "_BACKSLASH_"},
|
|
{']', "_RIGHTBRACKET_"},
|
|
{'^', "_CIRCUMFLEX_"},
|
|
{'`', "_BACKQUOTE_"},
|
|
{'{', "_LEFTCURLY_"},
|
|
{'|', "_VERTICALBAR_"},
|
|
{'}', "_RIGHTCURLY_"},
|
|
{'~', "_TILDE_"},
|
|
{'/', "_SLASH_"} /* should not occur in names */
|
|
/* {'_', "_UNDERSCORE_"} */
|
|
};
|
|
static int idtlen;
|
|
static int hexlen;
|
|
int nctable = (sizeof(ctable))/(sizeof(ctable[0]));
|
|
int newlen;
|
|
|
|
idtlen = strlen("DIGIT_n_"); /* initial digit template */
|
|
hexlen = 1+strlen("_XHH"); /* template for hex of non-ASCII bytes */
|
|
if(init == 0) {
|
|
int i;
|
|
char *rp;
|
|
|
|
for(i = 0; i < 128; i++) {
|
|
rp = emalloc(2);
|
|
rp[0] = i;
|
|
rp[1] = '\0';
|
|
repls[i] = rp;
|
|
}
|
|
for(i=0; i < nctable; i++) {
|
|
size_t j = ctable[i].c;
|
|
free(repls[j]);
|
|
repls[j] = ctable[i].s;
|
|
}
|
|
for(i = 128; i < 256; i++) {
|
|
rp = emalloc(hexlen);
|
|
snprintf(rp, hexlen, "_X%2.2X", i);
|
|
rp[hexlen - 1] = '\0';
|
|
repls[i] = rp;
|
|
}
|
|
for(i = 0; i < 256; i++) {
|
|
lens[i] = strlen(repls[i]);
|
|
}
|
|
init = 1; /* only do this initialization once */
|
|
}
|
|
|
|
count = 0;
|
|
cp = name;
|
|
while(*cp != '\0') { /* get number of extra bytes for newname */
|
|
size_t j;
|
|
if(*cp < 0) { /* handle signed or unsigned chars */
|
|
j = *cp + 256;
|
|
} else {
|
|
j = *cp;
|
|
}
|
|
count += lens[j] - 1;
|
|
cp++;
|
|
}
|
|
|
|
cp = name;
|
|
if('0' <= *cp && *cp <= '9') { /* names that begin with a digit */
|
|
count += idtlen - 1;
|
|
}
|
|
newlen = strlen(name) + count + 1; /* bytes left to be filled */
|
|
newname = (char *) emalloc(newlen);
|
|
sp = newname;
|
|
if('0' <= *cp && *cp <= '9') { /* handle initial digit, if any */
|
|
snprintf(sp, newlen, "DIGIT_%c_", *cp);
|
|
sp += idtlen;
|
|
newlen -= idtlen;
|
|
cp++;
|
|
}
|
|
*sp = '\0';
|
|
while(*cp != '\0') { /* copy name to newname, replacing special chars */
|
|
size_t j, len;
|
|
/* cp is current position in name, sp is current position in newname */
|
|
if(*cp < 0) { /* j is table index for character *cp */
|
|
j = *cp + 256;
|
|
} else {
|
|
j = *cp;
|
|
}
|
|
len = strlcat(sp, repls[j], newlen);
|
|
assert(len < newlen);
|
|
sp += lens[j];
|
|
newlen -= lens[j];
|
|
cp++;
|
|
}
|
|
return newname;
|
|
}
|
|
|
|
|
|
/*
|
|
* Replace escaped chars in CDL representation of name such as
|
|
* 'abc\:def\ gh\\i' with unescaped version, such as 'abc:def gh\i'.
|
|
*/
|
|
void
|
|
deescapify (char *name)
|
|
{
|
|
const char *cp = name;
|
|
char *sp;
|
|
size_t len = strlen(name);
|
|
char *newname;
|
|
|
|
if(strchr(name, '\\') == NULL)
|
|
return;
|
|
|
|
newname = (char *) emalloc(len + 1);
|
|
cp = name;
|
|
sp = newname;
|
|
while(*cp != '\0') { /* delete '\' chars, except change '\\' to '\' */
|
|
switch (*cp) {
|
|
case '\\':
|
|
if(*(cp+1) == '\\') {
|
|
*sp++ = '\\';
|
|
cp++;
|
|
}
|
|
break;
|
|
default:
|
|
*sp++ = *cp;
|
|
break;
|
|
}
|
|
cp++;
|
|
}
|
|
*sp = '\0';
|
|
/* assert(strlen(newname) <= strlen(name)); */
|
|
strncpy(name, newname, len);
|
|
free(newname);
|
|
return;
|
|
}
|