mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-12-27 08:49:16 +08:00
6934aa2e8b
re: https://github.com/Unidata/netcdf-c/issues/1373 (partial) * Mark some global constants be const to indicate to make them easier to track. * Hide direct access to the ncrc_globalstate behind a function call. * Convert dispatch tables to constants (except the user defined ones) This has some consequences in terms of function arguments needing to be marked as const also. * Remove some no longer needed global fields * Aggregate all the globals in nclog.c * Uniformly replace nc_sizevector{0,1} with NC_coord_{zero,one} * Uniformly replace nc_ptrdffvector1 with NC_stride_one * Remove some obsolete code
899 lines
29 KiB
C
899 lines
29 KiB
C
#include "ncdap4.h"
|
|
#include "dapodom.h"
|
|
#include "dapalign.h"
|
|
#ifdef DEBUG
|
|
#include "dapdump.h"
|
|
#endif
|
|
#include "ncd3dispatch.h"
|
|
|
|
static NCerror getcontent4(NCDAPCOMMON*, Getvara*, CDFnode* rootnode, void* data);
|
|
static NCerror getcontent4r(NCDAPCOMMON*, Getvara*, CDFnode* tnode, OCdata, NCbytes*);
|
|
static NCerror getcontent4prim(NCDAPCOMMON* dapcomm, Getvara*, CDFnode* tnode, DCEsegment*,
|
|
OCdata currentcontent, NCbytes* memory);
|
|
static int findfield(CDFnode* node, CDFnode* subnode);
|
|
static int contiguousdims(Dapodometer* odom);
|
|
static NCerror ncdap4convert(nc_type srctype, nc_type dsttype, char* memory, char* value, size_t);
|
|
static void makewholesegment4(DCEsegment* seg, NClist* dimset);
|
|
|
|
|
|
|
|
|
|
/*
|
|
See the comment preceding nc3d_getvarx
|
|
to understand how constraints are handled.
|
|
*/
|
|
int
|
|
NCD4_get_vara(int ncid, int varid,
|
|
const size_t* startp,
|
|
const size_t* countp,
|
|
const ptrdiff_t* stridep,
|
|
void* data,
|
|
nc_type externaltype0)
|
|
{
|
|
unsigned int i;
|
|
NCerror ncstat = NC_NOERR;
|
|
OCerror ocstat = OC_NOERR;
|
|
NC* drno;
|
|
NCDAPCOMMON* dapcomm;
|
|
CDFnode* cdfvar; /* cdf node mapping to var*/
|
|
NClist* varnodes;
|
|
Getvara* varainfo = NULL;
|
|
CDFnode* xtarget = NULL;
|
|
CDFnode* target = NULL;
|
|
DCEprojection* varaprojection = NULL;
|
|
NCcachenode* cachenode = NULL;
|
|
nc_type externaltype = externaltype0;
|
|
size_t localcount[NC_MAX_VAR_DIMS];
|
|
NClist* ncdimsall;
|
|
size_t ncrank;
|
|
NClist* vars = NULL;
|
|
DCEconstraint* fetchconstraint = NULL;
|
|
DCEprojection* fetchprojection = NULL;
|
|
DCEprojection* walkprojection = NULL;
|
|
int state;
|
|
#define FETCHWHOLE 1 /* fetch whole data set */
|
|
#define FETCHPART 2 /* fetch constrained variable */
|
|
#define CACHED 4 /* whole variable is already in the cache */
|
|
|
|
LOG((2, "nc_get_vara: ncid 0x%x varid %d", ncid, varid));
|
|
|
|
ncstat = NC_check_id(ncid, (NC**)&drno);
|
|
if(ncstat != NC_NOERR) goto fail;
|
|
dapcomm = (NCDAPCOMMON*)drno->dispatchdata;
|
|
|
|
/* Find cdfnode corresponding to the var.*/
|
|
varnodes = dapcomm->cdf.varnodes;
|
|
cdfvar = NULL;
|
|
for(i=0;i<nclistlength(varnodes);i++) {
|
|
CDFnode* node = (CDFnode*)nclistget(varnodes,i);
|
|
if(node->ncid == varid) {
|
|
cdfvar = node;
|
|
break;
|
|
}
|
|
}
|
|
ASSERT((cdfvar != NULL));
|
|
|
|
/* Get the dimension info */
|
|
ncdimsall = cdfvar->array.dimset0;
|
|
ncrank = nclistlength(ncdimsall);
|
|
|
|
#ifdef DEBUG
|
|
{
|
|
int i;
|
|
fprintf(stderr,"getvarx: %s",cdfvar->ncfullname);
|
|
for(i=0;i<ncrank;i++)
|
|
fprintf(stderr,"[%ld:%ld:%ld]",
|
|
(long)startp[i],
|
|
(long)countp[i],
|
|
(long)stridep[i]
|
|
);
|
|
fprintf(stderr,"\n");
|
|
}
|
|
#endif
|
|
|
|
/* Fill in missing arguments */
|
|
if(startp == NULL)
|
|
startp = NC_coord_zero;
|
|
|
|
if(countp == NULL) {
|
|
/* Accumulate the dimension sizes */
|
|
for(i=0;i<ncrank;i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(ncdimsall,i);
|
|
localcount[i] = dim->dim.declsize;
|
|
}
|
|
countp = localcount;
|
|
}
|
|
|
|
if(stridep == NULL)
|
|
stridep = NC_stride_one;
|
|
|
|
/* Validate the dimension sizes */
|
|
for(i=0;i<ncrank;i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(ncdimsall,i);
|
|
if(startp[i] > dim->dim.declsize
|
|
|| startp[i]+countp[i] > dim->dim.declsize) {
|
|
ncstat = NC_EINVALCOORDS;
|
|
goto fail;
|
|
}
|
|
}
|
|
|
|
#ifdef DEBUG
|
|
{ NClist* dims = cdfvar->array.dimset0;
|
|
fprintf(stderr,"getvarx: %s/%d",cdfvar->ncfullname,(int)nclistlength(dims));
|
|
if(nclistlength(dims) > 0) {int i;
|
|
for(i=0;i<nclistlength(dims);i++)
|
|
fprintf(stderr,"[%lu:%lu:%lu]",(unsigned long)startp[i],(unsigned long)countp[i],(unsigned long)stridep[i]);
|
|
fprintf(stderr," -> ");
|
|
for(i=0;i<nclistlength(dims);i++)
|
|
if(stridep[i]==1)
|
|
fprintf(stderr,"[%lu:%lu]",(unsigned long)startp[i],(unsigned long)((startp[i]+countp[i])-1));
|
|
else
|
|
fprintf(stderr,"[%lu:%lu:%lu]",
|
|
(unsigned long)startp[i],
|
|
(unsigned long)stridep[i],
|
|
(unsigned long)(((startp[i]+countp[i])*stridep[i])-1));
|
|
}
|
|
fprintf(stderr,"\n");
|
|
}
|
|
#endif
|
|
|
|
/* Default to using the var type */
|
|
if(externaltype == NC_NAT) externaltype = cdfvar->externaltype;
|
|
|
|
/* Validate any implied type conversion*/
|
|
if(cdfvar->nctype == NC_Primitive
|
|
&& cdfvar->etype != externaltype && externaltype == NC_CHAR) {
|
|
/* The only disallowed conversion is to/from char and non-byte
|
|
numeric types*/
|
|
switch (cdfvar->etype) {
|
|
case NC_STRING: case NC_URL:
|
|
case NC_CHAR: case NC_BYTE: case NC_UBYTE:
|
|
break;
|
|
default:
|
|
THROWCHK(NC_ECHAR);
|
|
goto fail;
|
|
}
|
|
}
|
|
|
|
ncstat = makegetvar34(dapcomm,cdfvar,data,externaltype,&varainfo);
|
|
if(ncstat) {THROWCHK(NC_ENOMEM); goto fail;}
|
|
|
|
|
|
state = 0;
|
|
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE)) {
|
|
state = FETCHWHOLE;
|
|
cachenode = dapcomm->cdf.cache->prefetch;
|
|
ASSERT((cachenode != NULL));
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"Unconstrained: reusing prefetch\n");
|
|
#endif
|
|
#ifdef IGNORE
|
|
} else if(iscached(dapcomm,cdfvar,&cachenode)) {
|
|
#else
|
|
} else if(iscached(dapcomm,cdfvar,&cachenode)) {
|
|
#endif
|
|
/* If it is cached, then it is a whole variable but may still
|
|
need to apply constraints */
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"Reusing cache\n");
|
|
#endif
|
|
ASSERT(cachenode->wholevariable); /* by construction */
|
|
state = CACHED;
|
|
} else {/* load using constraints */
|
|
state = FETCHPART;
|
|
}
|
|
|
|
ASSERT(state != 0);
|
|
|
|
|
|
ncstat = buildvaraprojection3(varainfo,
|
|
startp,countp,nc_ptrdiffvector1,
|
|
&varaprojection);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
|
|
/* In all cases, we need to construct the single projection
|
|
as the merge of the url projections and the vara projection.
|
|
*/
|
|
|
|
/* Convert the start/stop/stride info into a projection */
|
|
ncstat = buildvaraprojection3(varainfo,
|
|
startp,countp,stridep,
|
|
&varaprojection);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
|
|
fetchprojection = NULL;
|
|
walkprojection = NULL;
|
|
if(state == FETCHPART) {
|
|
/* Create a merge of the url projections and the vara projection */
|
|
ncstat = daprestrictprojection(dapcomm->oc.dapconstraint->projections,
|
|
varaprojection,&fetchprojection);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
/* Clone the projection for use with the walk */
|
|
walkprojection = (DCEprojection*)dceclone((DCEnode*)fetchprojection);
|
|
/* We might still end up with a whole variable */
|
|
if(dceiswholeprojection(fetchprojection))
|
|
state = FETCHWHOLE;
|
|
/* Build the complete constraint to use in the fetch */
|
|
fetchconstraint = (DCEconstraint*)dcecreate(CES_CONSTRAINT);
|
|
/* merged constraint just uses the url constraint selection */
|
|
fetchconstraint->selections = dceclonelist(dapcomm->oc.dapconstraint->selections);
|
|
fetchconstraint->projections = nclistnew();
|
|
nclistpush(fetchconstraint->projections,(ncelem)fetchprojection);
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"getvarx: fetchconstraint: %s\n",dumpconstraint(fetchconstraint));
|
|
#endif
|
|
/* buildcachenode3 will create a new cachenode and
|
|
will also fetch the corresponding datadds */
|
|
vars = nclistnew();
|
|
nclistpush(vars,(ncelem)varainfo->target);
|
|
ncstat = buildcachenode34(dapcomm,fetchconstraint,vars,&cachenode,0);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
} else if(state == FETCHWHOLE) {
|
|
/* buildcachenode3 will create a new cachenode and
|
|
will also fetch the corresponding datadds */
|
|
vars = nclistnew();
|
|
nclistpush(vars,(ncelem)varainfo->target);
|
|
/* Build the complete constraint to use in the fetch */
|
|
fetchconstraint = (DCEconstraint*)dcecreate(CES_CONSTRAINT);
|
|
/* merged constraint just uses the url constraint selection */
|
|
fetchconstraint->selections = dceclonelist(dapcomm->oc.dapconstraint->selections);
|
|
/* Use no projections */
|
|
fetchconstraint->projections = nclistnew();
|
|
ncstat = buildcachenode34(dapcomm,fetchconstraint,vars,&cachenode,0);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
}
|
|
|
|
ASSERT(cachenode != NULL);
|
|
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"cache.datadds=%s\n",dumptree(cachenode->datadds));
|
|
#endif
|
|
|
|
/* attach DATADDS to DDS */
|
|
unattach34(dapcomm->cdf.ddsroot);
|
|
ncstat = attachsubset34(cachenode->datadds,dapcomm->cdf.ddsroot);
|
|
if(ncstat) goto fail;
|
|
|
|
/* Now, walk to the relevant instance */
|
|
switch (state) {
|
|
case FETCHWHOLE: case CACHED:
|
|
/* Create a merge of the url projections and the vara projection */
|
|
ncstat = daprestrictprojection(dapcomm->oc.dapconstraint->projections,
|
|
varaprojection,&walkprojection);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
break;
|
|
case FETCHPART:
|
|
/* Derive the proper walk projection from the
|
|
fetchprojection (actually the clone created above) */
|
|
ncstat = dapshiftprojection(walkprojection);/*arg will be modified */
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
break;
|
|
default: PANIC("illegal getvarx state");
|
|
}
|
|
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"getvarx: walkprojection: %s\n",dumpprojection(walkprojection));
|
|
#endif
|
|
|
|
/* Fix up varainfo to use the cache */
|
|
varainfo->cache = cachenode;
|
|
varainfo->varaprojection = walkprojection;
|
|
walkprojection = NULL;
|
|
|
|
/* Get the var correlate from the datadds */
|
|
target = varainfo->target;
|
|
/* xtarget is in the datadds space */
|
|
xtarget = target->attachment;
|
|
if(xtarget == NULL)
|
|
{THROWCHK(ncstat=NC_ENODATA); goto fail;}
|
|
|
|
/* Switch to datadds tree space*/
|
|
varainfo->target = xtarget;
|
|
ncstat = getcontent4(dapcomm,varainfo,cachenode->datadds,data);
|
|
if(ncstat != OC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
goto ok;
|
|
|
|
fail:
|
|
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
|
|
ok:
|
|
nclistfree(vars);
|
|
dcefree((DCEnode*)fetchconstraint);
|
|
dcefree((DCEnode*)varaprojection);
|
|
freegetvara(varainfo);
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
static NCerror
|
|
getcontent4(NCDAPCOMMON* dapcomm, Getvara* xgetvar, CDFnode* xroot, void* data)
|
|
{
|
|
NCerror ncstat = NC_NOERR;
|
|
OCerror ocstat = OC_NOERR;
|
|
NCbytes* memory;
|
|
size_t alloc;
|
|
int fieldindex;
|
|
CDFnode* tnode = xgetvar->target;
|
|
OCconnection conn = dapcomm->oc.conn;
|
|
OCdata rootcontent = OCNULL;
|
|
OCdata fieldcontent = OCNULL;
|
|
OCdata dimcontent = OCNULL;
|
|
OCdata seqcontent = OCNULL;
|
|
OCdata gridcontent = OCNULL;
|
|
Dapodometer* odom = NULL;
|
|
OCobject ocroot = OCNULL;
|
|
int caching = FLAGSET(dapcomm->controls,NCF_CACHE);
|
|
int unconstrainable = FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE);
|
|
nc_type externaltype = xgetvar->dsttype;
|
|
|
|
/* is var from a toplevel grid? */
|
|
int virtual = tnode->virtual;
|
|
/* is var a toplevel Sequence? */
|
|
int seqvar = daptopseq(tnode);
|
|
|
|
if(seqvar) {
|
|
alloc = sizeof(nc_vlen_t);
|
|
} if(tnode->nctype == NC_Primitive) {
|
|
/* compute the # elements */
|
|
size_t nelems = dimproduct3(tnode->array.dimset0);
|
|
/* Pull the field size from the externaltype. */
|
|
alloc = (nctypesizeof(externaltype)*nelems);
|
|
} else {
|
|
ASSERT((tnode->attachment != NULL));
|
|
/* Pull the field size from the node type size. */
|
|
alloc = (size_t)(tnode->attachment->typesize.field.size);
|
|
}
|
|
#ifdef READCHECK
|
|
fprintf(stderr,"getcontent4: |%s| = %lu\n",tnode->name,alloc);
|
|
#endif
|
|
memory = ncbytesnew();
|
|
ncbytessetcontents(memory,data,alloc);
|
|
|
|
/* Get the root content*/
|
|
ocroot = xroot->tree->ocroot;
|
|
rootcontent = oc_data_new(conn);
|
|
ocstat = oc_data_root(conn,ocroot,rootcontent);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
|
|
/* Move to the field for this var;
|
|
handle grid vars separately */
|
|
if(virtual) {
|
|
int gridindex;
|
|
/* Get index of the grid node wrt to the root node */
|
|
gridindex = findfield(xroot,tnode->container);
|
|
if(gridindex < 0) {ncstat = NC_ENOTVAR; goto fail;}
|
|
gridcontent = oc_data_new(conn);
|
|
ocstat = oc_data_ith(conn,rootcontent,gridindex,gridcontent);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
/* Now move to the relevant grid field */
|
|
fieldindex = findfield(tnode->container,tnode);
|
|
if(fieldindex < 0) {ncstat = NC_ENOTVAR; goto fail;}
|
|
fieldcontent = oc_data_new(conn);
|
|
ocstat = oc_data_ith(conn,gridcontent,fieldindex,fieldcontent);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
} else if(seqvar) { /* Move to the seq data */
|
|
int seqindex = findfield(xroot,tnode);
|
|
if(seqindex < 0) {ncstat = NC_ENOTVAR; goto fail;}
|
|
seqcontent = oc_data_new(conn);
|
|
ocstat = oc_data_ith(conn,rootcontent,seqindex,seqcontent);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
} else {
|
|
fieldindex = findfield(xroot,tnode);
|
|
if(fieldindex < 0) {ncstat = NC_ENOTVAR; goto fail;}
|
|
if(tnode->virtual) {
|
|
int structindex;
|
|
/* Get index of the struct node wrt to the root node */
|
|
structindex = findfield(xroot,tnode->container);
|
|
if(structindex < 0) {ncstat = NC_ENOTVAR; goto fail;}
|
|
/* Get index of the structure field wrt to the virtual struct */
|
|
fieldindex = findfield(tnode->container,tnode);
|
|
if(fieldindex < 0) {ncstat = NC_ENOTVAR; goto fail;}
|
|
/* Actual field is structindex + fieldindex */
|
|
fieldindex += structindex;
|
|
fieldcontent = oc_data_new(conn);
|
|
ocstat = oc_data_ith(conn,fieldcontent,fieldindex,fieldcontent);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
} else {
|
|
fieldcontent = oc_data_new(conn);
|
|
ocstat = oc_data_ith(conn,rootcontent,fieldindex,fieldcontent);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
}
|
|
}
|
|
|
|
if(seqvar) {
|
|
ASSERT((seqcontent != OCNULL));
|
|
ncstat=getcontent4r(dapcomm,xgetvar,tnode,seqcontent,memory);
|
|
} else if(tnode->nctype == NC_Primitive) {
|
|
/* Stride the dimensions and get the instances */
|
|
DCEsegment* segment = NULL;
|
|
ASSERT((nclistlength(xgetvar->varaprojection->var->segments)==1));
|
|
segment = (DCEsegment*)nclistget(xgetvar->varaprojection->var->segments,0);
|
|
ASSERT((fieldcontent != OCNULL));
|
|
ncstat = getcontent4prim(dapcomm,xgetvar,tnode,segment,fieldcontent,memory);
|
|
} else if(nclistlength(tnode->array.dimset0) > 0) {
|
|
/* Stride the dimensions and get the instances */
|
|
DCEsegment* segment = NULL;
|
|
ASSERT((nclistlength(xgetvar->varaprojection->var->segments)==1));
|
|
segment = (DCEsegment*)nclistget(xgetvar->varaprojection->var->segments,0);
|
|
if(caching || unconstrainable) {
|
|
odom = newdapodometer(segment->slices,0,segment->rank);
|
|
} else { /*Since vara was projected out, build a simple odometer*/
|
|
odom = newsimpledapodometer(segment,segment->rank);
|
|
}
|
|
while(dapodometermore(odom)) {
|
|
/* Compute which instance to move to*/
|
|
unsigned int dimoffset = dapodometercount(odom);
|
|
dimcontent = oc_data_new(conn);
|
|
ocstat = oc_data_ith(conn,fieldcontent,dimoffset,dimcontent);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
ncstat = getcontent4r(dapcomm,xgetvar,tnode,dimcontent,memory);
|
|
dapodometerincr(odom);
|
|
}
|
|
freedapodometer(odom);
|
|
} else {
|
|
ncstat=getcontent4r(dapcomm,xgetvar,tnode,fieldcontent,memory);
|
|
}
|
|
|
|
/*ok:*/
|
|
fail:
|
|
oc_data_free(conn,gridcontent);
|
|
oc_data_free(conn,seqcontent);
|
|
oc_data_free(conn,dimcontent);
|
|
oc_data_free(conn,fieldcontent);
|
|
oc_data_free(conn,rootcontent);
|
|
ncbytesfree(memory);/* leaves contents untouched */
|
|
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
/* Recursive walker part of getcontent */
|
|
static NCerror
|
|
getcontent4r(NCDAPCOMMON* dapcomm,
|
|
Getvara* xgetvar,
|
|
CDFnode* tnode, /* type definition */
|
|
OCdata currentcontent,
|
|
NCbytes* memory)
|
|
{
|
|
unsigned int i;
|
|
OCerror ocstat = OC_NOERR;
|
|
NCerror ncstat = NC_NOERR;
|
|
OCmode mode;
|
|
OCconnection conn = dapcomm->oc.conn;
|
|
OCdata reccontent = OCNULL;
|
|
OCdata fieldcontent = OCNULL;
|
|
OCdata dimcontent = OCNULL;
|
|
Dapodometer* odom = NULL;
|
|
NCbytes* vlenmemory = NULL;
|
|
nc_vlen_t vlenref = {0,NULL};
|
|
int caching = FLAGSET(dapcomm->controls,NCF_CACHE);
|
|
int unconstrainable = FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE);
|
|
|
|
oc_data_mode(conn,currentcontent,&mode);
|
|
#ifdef READCHECK
|
|
{
|
|
int rank = nclistlength(tnode->array.dimset0);
|
|
fprintf(stderr,"getcontent4r: rank=%lu mode=%d nctype=%s\n",
|
|
(unsigned long)rank,mode,nctypetostring(tnode->nctype));
|
|
}
|
|
#endif
|
|
|
|
if(tnode->nctype == NC_Primitive) {
|
|
DCEsegment seg; /* temporary */
|
|
seg.name = tnode->ocname;
|
|
seg.cdfnode = tnode;
|
|
makewholesegment4(&seg,tnode->array.dimset0);
|
|
ncstat = getcontent4prim(dapcomm,xgetvar,tnode,&seg,currentcontent,memory);
|
|
goto done;
|
|
}
|
|
|
|
if(tnode->virtual) {
|
|
fprintf(stderr,"VIRTUAL ENCOUNTER\n");
|
|
abort();
|
|
}
|
|
|
|
switch (mode) {
|
|
case OCARRAYMODE: {
|
|
unsigned int rank = nclistlength(tnode->array.dimset0);
|
|
DCEsegment seg; /* temporary */
|
|
ASSERT((tnode->nctype == NC_Structure));
|
|
seg.name = tnode->ocname;
|
|
seg.cdfnode = tnode;
|
|
makewholesegment4(&seg,tnode->array.dimset0);
|
|
|
|
/* The goal here is to walk the indices (if any)
|
|
and extract each instance */
|
|
ASSERT((rank > 0));
|
|
if(caching || unconstrainable) {
|
|
odom = newdapodometer(seg.slices,0,rank);
|
|
} else { /*Since vara was projected out, build a simple odometer*/
|
|
odom = newsimpledapodometer(&seg,rank);
|
|
}
|
|
dimcontent = oc_data_new(conn);
|
|
while(dapodometermore(odom)) {
|
|
/* Compute which instance to move to*/
|
|
unsigned int dimoffset = dapodometercount(odom);
|
|
ocstat = oc_data_ith(conn,currentcontent,dimoffset,dimcontent);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
ncstat = getcontent4r(dapcomm,xgetvar,tnode,dimcontent,memory);
|
|
}
|
|
} break;
|
|
|
|
case OCFIELDMODE: /* Walk each field in turn */
|
|
/* Align the buffer to struct boundary*/
|
|
alignbuffer3(memory,tnode->typesize.instance.alignment);
|
|
fieldcontent = oc_data_new(conn);
|
|
for(i=0;i<nclistlength(tnode->subnodes);i++) {
|
|
CDFnode* subnode = (CDFnode*)nclistget(tnode->subnodes,i);
|
|
ocstat = oc_data_ith(conn,currentcontent,i,fieldcontent);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
ncstat = getcontent4r(dapcomm,xgetvar,subnode,fieldcontent,memory);
|
|
}
|
|
break;
|
|
|
|
case OCSEQUENCEMODE:
|
|
/* Collect the set of records as a separate memory structure */
|
|
vlenmemory = ncbytesnew();
|
|
ncbytessetalloc(vlenmemory,4096);
|
|
#ifdef READCHECK
|
|
fprintf(stderr,"getcontent4r: record: vlenmemory=%lx\n",
|
|
(unsigned long)ncbytescontents(vlenmemory));
|
|
#endif
|
|
reccontent = oc_data_new(conn);
|
|
for(i=0;;i++) {
|
|
ocstat = oc_data_ith(conn,currentcontent,i,reccontent);
|
|
if(ocstat == OC_EINVALCOORDS) {ocstat=OC_NOERR; break;} /* no more records */
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
ncstat = getcontent4r(dapcomm,xgetvar,tnode,reccontent,vlenmemory);
|
|
}
|
|
vlenref.len = i;
|
|
vlenref.p = ncbytesextract(vlenmemory);
|
|
|
|
#ifdef READCHECK
|
|
fprintf(stderr,"getcontent4r: record: vlen.p=%lx\n",
|
|
(unsigned long)vlenref.p);
|
|
#endif
|
|
/* Now put an nc_vlen_t into our buffer */
|
|
alignbuffer3(memory,tnode->typesize.field.alignment);
|
|
ncbytesappendn(memory,(char*)&vlenref,sizeof(vlenref));
|
|
#ifdef READCHECK
|
|
fprintf(stderr,"getcontent4r: record: memory=%lx |memory|=%lu\n",
|
|
(unsigned long)ncbytescontents(memory),(unsigned long)ncbyteslength(memory));
|
|
#endif
|
|
break;
|
|
|
|
default: ncstat = NC_EINVAL; {THROWCHK(ncstat); goto fail;}
|
|
}
|
|
|
|
done:
|
|
fail:
|
|
ncbytesfree(vlenmemory);
|
|
oc_data_free(conn,dimcontent);
|
|
oc_data_free(conn,fieldcontent);
|
|
oc_data_free(conn,reccontent);
|
|
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
static NCerror
|
|
getcontent4prim(NCDAPCOMMON* dapcomm,
|
|
Getvara* xgetvar,
|
|
CDFnode* tnode,
|
|
DCEsegment* segment,
|
|
OCdata currentcontent,
|
|
NCbytes* memory)
|
|
{
|
|
OCerror ocstat = OC_NOERR;
|
|
NCerror ncstat = NC_NOERR;
|
|
unsigned int rank;
|
|
OCconnection conn = dapcomm->oc.conn;
|
|
Dapodometer* odom = NULL;
|
|
unsigned int memoffset;
|
|
DCEslice* slices = segment->slices;
|
|
int caching = FLAGSET(dapcomm->controls,NCF_CACHE);
|
|
int unconstrainable = FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE);
|
|
size_t internaltypesize, externaltypesize;
|
|
nc_type internaltype = segment->cdfnode->etype;
|
|
nc_type externaltype = xgetvar->dsttype;
|
|
int bit8type; /* is this an 8 bit type? */
|
|
|
|
if(externaltype == NC_NAT) externaltype = internaltype;
|
|
|
|
internaltypesize = nctypesizeof(internaltype);
|
|
externaltypesize = nctypesizeof(externaltype);
|
|
|
|
switch (internaltype) {
|
|
case NC_CHAR: case NC_BYTE: case NC_UBYTE: bit8type = 1; break;
|
|
default: bit8type = 0; break;
|
|
}
|
|
|
|
rank = nclistlength(tnode->array.dimset0);
|
|
ASSERT((rank == segment->rank));
|
|
#ifdef READCHECK
|
|
fprintf(stderr,"getcontent4prim: tnode=%s/%d segment=%s internaltype=%s externaltype=%s memory=%lx internaltypesize=%lu externaltypesize=%lu\n",
|
|
tnode->name,rank,dumpsegment(segment),
|
|
nctypetostring(internaltype),nctypetostring(externaltype),
|
|
(unsigned long)ncbytescontents(memory),
|
|
(unsigned long)internaltypesize,
|
|
(unsigned long)externaltypesize);
|
|
#endif
|
|
alignbuffer3(memory,ncctypealignment(externaltype)); /* Align to the proper boundary */
|
|
memoffset = ncbyteslength(memory);
|
|
#ifdef READCHECK
|
|
fprintf(stderr,"getcontent4prim: alignment=%d memory.after=%lx\n",
|
|
ncctypealignment(externaltype),(unsigned long)ncbytescontents(memory));
|
|
#endif
|
|
if(rank == 0) { /* singleton data item*/
|
|
char value[32]; /* big enough to hold any single primitive value*/
|
|
void* memdata;
|
|
ASSERT((internaltypesize <= sizeof(value)));
|
|
if(!ncbytessetlength(memory,memoffset+externaltypesize))
|
|
return NC_ENOMEM;
|
|
#ifdef READCHECK
|
|
fprintf(stderr,"getcontent4prim: scalar: memory=%lx |memory|=%lu\n",
|
|
(unsigned long)ncbytescontents(memory),(unsigned long)ncbyteslength(memory));
|
|
#endif
|
|
memdata = ncbytescontents(memory)+memoffset;
|
|
#ifdef READCHECK
|
|
fprintf(stderr,"getcontent4prim: scalar: memdata=%lx\n",(unsigned long)memdata);
|
|
#endif
|
|
ocstat = oc_data_get(conn,currentcontent,value,sizeof(value),0,1);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
ncstat = ncdap4convert(internaltype,externaltype,memdata,value,1);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
} else { /* rank > 0 */
|
|
size_t requested, arraysize;
|
|
char* memdata;
|
|
int contiguous;
|
|
|
|
if(caching || unconstrainable) {
|
|
odom = newdapodometer(slices,0,rank);
|
|
} else {
|
|
odom = newsimpledapodometer(segment,rank);
|
|
}
|
|
|
|
/* Compute the actual # of values requested by the caller */
|
|
requested = dapodometerpoints(odom);
|
|
|
|
if(bit8type && externaltype == NC_STRING) { /* special case */
|
|
arraysize = nctypesizeof(NC_STRING); /* allocate a single string */
|
|
} else
|
|
arraysize = externaltypesize*requested;
|
|
|
|
if(!ncbytessetlength(memory,memoffset+arraysize)) return NC_ENOMEM;
|
|
memdata = ncbytescontents(memory)+memoffset;
|
|
|
|
#ifdef TEST
|
|
{
|
|
size_t dimcount;
|
|
oc_data_count(conn,currentcontent,&dimcount);
|
|
printf("read: %s: memoffset=%lu externaltypesize=%lu dimcount=%lu requested=%lu arraysize=%lu\n",
|
|
tnode->name,(unsigned long)memoffset,(unsigned long)externaltypesize,
|
|
(unsigned long)dimcount,(unsigned long)requested,arraysize);
|
|
fflush(stdout);
|
|
}
|
|
#endif
|
|
|
|
/* Optimize off the use of the odometer by checking the slicing
|
|
to locate the largest possible suffix of dimensions that
|
|
represent a contiguous chunk; However do not do this if
|
|
external type conversion is needed.
|
|
*/
|
|
|
|
contiguous = contiguousdims(odom);
|
|
if(contiguous < odom->rank && internaltype == externaltype) {
|
|
/* Compute the chunk size */
|
|
size_t chunkcount;
|
|
|
|
ASSERT((odom->rank != 1 || contiguous == 0));
|
|
chunkcount = dapodometerspace(odom,contiguous);
|
|
|
|
if(contiguous == 0) {
|
|
/* The whole vara slice is usable:
|
|
read the whole chunk at one shot.
|
|
*/
|
|
/* copy the data locally before conversion */
|
|
ocstat = oc_data_get(conn,currentcontent,memdata,
|
|
arraysize,0,chunkcount);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
} else { /* odom->rank > 1 && contiguous > 0 */
|
|
size_t memchunk = (externaltypesize * chunkcount);
|
|
/* Use the odometer to find each contiguous chunk. */
|
|
odom->rank = contiguous; /* move in chunksize chunks */
|
|
while(dapodometermore(odom)) {
|
|
size_t nchunks = dapodometercount(odom);
|
|
size_t chunkoffset = nchunks * chunkcount;
|
|
ocstat = oc_data_get(conn,currentcontent,memdata,
|
|
arraysize,chunkoffset,chunkcount);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
memdata += memchunk;
|
|
arraysize -= memchunk;
|
|
dapodometerincr(odom);
|
|
}
|
|
}
|
|
} else if(bit8type && externaltype == NC_STRING) {
|
|
/* special case conversion */
|
|
char* s = (char*)malloc(requested+1); /* bytes will go into a single string */
|
|
char** sp = (char**)memdata;
|
|
ocstat = oc_data_get(conn,currentcontent,s,requested,0,requested);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
*sp = s;
|
|
memdata += externaltypesize;
|
|
} else { /*Oh well,use the odometer to walk to the appropriate fields*/
|
|
char value[32]; /* to hold any value*/
|
|
while(dapodometermore(odom)) {
|
|
size_t dimoffset = dapodometercount(odom);
|
|
ocstat = oc_data_get(conn,currentcontent,value,sizeof(value),dimoffset,1);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
ocstat = ncdap4convert(internaltype,externaltype,memdata,value,1);
|
|
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto fail;}
|
|
memdata += externaltypesize;
|
|
dapodometerincr(odom);
|
|
}
|
|
}
|
|
}
|
|
/*ok:*/
|
|
fail:
|
|
freedapodometer(odom);
|
|
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
static int
|
|
findfield(CDFnode* node, CDFnode* subnode)
|
|
{
|
|
size_t i;
|
|
for(i=0;i<nclistlength(node->subnodes);i++) {
|
|
CDFnode* test = (CDFnode*)nclistget(node->subnodes,i);
|
|
if(test == subnode) return i;
|
|
}
|
|
return -1;
|
|
}
|
|
|
|
/*
|
|
Find the largest prefix of n dimensions such that:
|
|
n .. odom.rank are complete: they have start of 0,
|
|
stride of 1 and count == dimensions size.
|
|
*/
|
|
static int
|
|
contiguousdims(Dapodometer* odom)
|
|
{
|
|
unsigned int i;
|
|
int mark = 0;
|
|
if(odom->rank <= 1) return 0;
|
|
for(i=0;i<odom->rank;i++) {
|
|
ASSERT((odom->slices[i].declsize != 0));
|
|
if(odom->slices[i].stride != 1
|
|
|| odom->slices[i].first > 0
|
|
|| odom->slices[i].length != odom->slices[i].declsize)
|
|
mark=i;
|
|
}
|
|
return mark+1;
|
|
}
|
|
|
|
static NCerror
|
|
ncdap4convert(nc_type srctype, nc_type dsttype, char* memory, char* value, size_t count)
|
|
{
|
|
NCerror ncstat = NC_NOERR;
|
|
size_t i;
|
|
|
|
#define CASE(nc1,nc2) (nc1*256+nc2)
|
|
switch (CASE(srctype,dsttype)) {
|
|
|
|
/* the NC_STRING/URL case is only used by ncdap4 */
|
|
case CASE(NC_STRING,NC_STRING):
|
|
case CASE(NC_STRING,NC_URL):
|
|
case CASE(NC_URL,NC_STRING):
|
|
case CASE(NC_URL,NC_URL):
|
|
for(i=0;i<count;i++) {
|
|
*((char**)memory) = (char*) *(char**)value;
|
|
memory += nctypesizeof(dsttype);
|
|
}
|
|
break;
|
|
|
|
/* conversion of string/url to char is illegal
|
|
because caller will not know size
|
|
*/
|
|
case CASE(NC_STRING,NC_CHAR):
|
|
case CASE(NC_URL,NC_CHAR):
|
|
ncstat = NC_EINVAL;
|
|
break;
|
|
|
|
/* convert char/byte/ubyte to string by creating a single string;
|
|
not clear this is correct
|
|
*/
|
|
case CASE(NC_BYTE,NC_STRING):
|
|
case CASE(NC_UBYTE,NC_STRING):
|
|
case CASE(NC_CHAR,NC_STRING): {
|
|
char* s = (char*)malloc(count+1);
|
|
char** smem = (char**)memory;
|
|
memcpy((void*)s,value,count);
|
|
s[count] = '\0';
|
|
*smem = s;
|
|
memory += nctypesizeof(dsttype);
|
|
} break;
|
|
|
|
default:
|
|
ncstat = dapconvert3(srctype,dsttype,memory,value,count);
|
|
break;
|
|
}
|
|
|
|
/*ok:*/
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
#ifdef IGNORE
|
|
/* In order to construct the projection,
|
|
we need to make sure to match the relevant dimensions
|
|
against the relevant nodes in which the ultimate target
|
|
is contained.
|
|
*/
|
|
static NCerror
|
|
buildvaraprojection4(NCDAPCOMMON* dapcomm, Getvara* getvar, NCbytes* buf)
|
|
{
|
|
int i, dimdex;
|
|
CDFnode* node;
|
|
CDFnode* target = getvar->target;
|
|
NClist* path = NULL;
|
|
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"vara: %s\n",getvaraprint(getvar));
|
|
#endif
|
|
if(!getvar->projected) return NC_NOERR;
|
|
|
|
path = nclistnew();
|
|
collectnodepath3(target,path,WITHOUTDATASET);
|
|
if(nclistlength(path) == 0) return NC_NOERR;
|
|
|
|
ncbytesclear(buf);
|
|
for(dimdex=0,i=0;i<nclistlength(path);i++) {
|
|
node = (CDFnode*)nclistget(path,i);
|
|
if(i>0) ncbytescat(buf,"."); /* we are past the first projection*/
|
|
ncbytescat(buf,node->name);
|
|
#ifdef IGNORE
|
|
if(node->nctype == NC_Sequence) {
|
|
ASSERT((node->usesequence == 1));
|
|
dimdex++;
|
|
} else if(nclistlength(node->array.dimset0) > 0) {
|
|
makevarprojection3(getvar->slices,dimdex,nclistlength(node->array.dimset0),buf);
|
|
dimdex += nclistlength(node->array.dimset0);
|
|
}
|
|
#endif
|
|
}
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"projection=|%s|",ncbytescontents(buf)); fflush(stderr);
|
|
#endif
|
|
nclistfree(path);
|
|
return NC_NOERR;
|
|
}
|
|
|
|
static void
|
|
makevarprojection3(NCslice* slices, int dimdex, int ndims, NCbytes* buf)
|
|
{
|
|
int i;
|
|
char tmp[1024];
|
|
NCslice* slice = slices+dimdex;
|
|
for(i=0;i<ndims;i++,slice++) {
|
|
snprintf(tmp,sizeof(tmp),"[%lu:%lu:%lu]",
|
|
(unsigned long)slice->first,
|
|
(unsigned long)slice->stride,
|
|
(unsigned long)(slice->stop - 1));
|
|
ncbytescat(buf,tmp);
|
|
}
|
|
}
|
|
#endif
|
|
|
|
static void
|
|
makewholesegment4(DCEsegment* seg, NClist* dimset)
|
|
{
|
|
int i;
|
|
unsigned int rank;
|
|
|
|
rank = nclistlength(dimset);
|
|
|
|
seg->rank = rank;
|
|
for(i=0;i<rank;i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(dimset,i);
|
|
dcemakewholeslice(&seg->slices[i],dim->dim.declsize);
|
|
}
|
|
seg->slicesdefined = 1;
|
|
seg->slicesdeclized = 1;
|
|
}
|