mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-12-21 08:39:46 +08:00
446348ed18
re: PR https://github.com/Unidata/netcdf-c/pull/2088 re: PR https://github.com/Unidata/netcdf-c/pull/2130 replaces: https://github.com/Unidata/netcdf-c/pull/2140 Changes: * Add NCZarr-specific quantize functions to the dispatch table. * Copy (modified) quantize code from libhdf5 to NCZarr * Add quantize invocation to zvar.c * Add support for _QuantizeBitgroomNumberOfSignificantDigits and _QuantizeGranularBitgroomNumberOfSignificantDigits to ncgen. * Modify nc_test4/tst_quantize.c to allow it to be used both for hdf5 and for nczarr. * Make dap4 properly handle quantize functions in dispatch table. * Add quantize attribute support to ncgen. Other changes: * Caught and fixed some S3 problems * Fixed some nczarr fillvalue problems. * Fixed some nczarr cache problems. * Cleanup some flaws in libdispatch/dinfermodel.c * Allow byterange requests to S3 be readable by dinfermodel.c/check_file_type * Remove the libnczarr ztracedispatch code (big change).
406 lines
12 KiB
YAML
406 lines
12 KiB
YAML
###
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# Build hdf4, hdf5 dependencies and cache them in a combined directory.
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# See https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners
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# for information related to github runners.
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###
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name: Run macOS-based netCDF Tests
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on: [pull_request]
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jobs:
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build-deps-osx:
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runs-on: macos-11
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strategy:
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matrix:
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hdf5: [ 1.12.1 ]
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steps:
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- uses: actions/checkout@v2
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###
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# libhdf5
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###
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- name: Cache libhdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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id: cache-hdf5-osx
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Build libhdf5-${{ runner.os}}-${{ matrix.hdf5 }}
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if: steps.cache-hdf5-osx.outputs.cache-hit != 'true'
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run: |
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set -x
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set -e
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
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tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
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pushd hdf5-${{ matrix.hdf5 }}
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./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib
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make -j
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make install -j
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popd
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nc-autotools-osx:
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needs: [ nc-cmake-tests-oneoff-osx, nc-ac-tests-oneoff-osx ]
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runs-on: macos-11
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strategy:
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matrix:
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hdf5: [ 1.12.1 ]
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#hdf5: [ 1.8.21, 1.10.1, 1.10.7, 1.12.1 ]
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use_nc4: [ nc3, nc4 ]
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use_dap: [ dap_off, dap_on ]
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use_nczarr: [ nczarr_off, nczarr_on ]
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steps:
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- uses: actions/checkout@v2
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###
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# Set Environmental Variables
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###
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- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
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- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- run: |
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echo "ENABLE_HDF4=--disable-hdf4" >> $GITHUB_ENV
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echo "ENABLE_HDF5=--disable-hdf5" >> $GITHUB_ENV
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if: matrix.use_nc4 == 'nc3'
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- run: |
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echo "ENABLE_HDF4=--enable-hdf4" >> $GITHUB_ENV
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echo "ENABLE_HDF5=--enable-hdf5" >> $GITHUB_ENV
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if: matrix.use_nc4 == 'nc4'
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- run: echo "ENABLE_DAP=--disable-dap" >> $GITHUB_ENV
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if: matrix.use_dap == 'dap_off'
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- run: echo "ENABLE_DAP=--enable-dap" >> $GITHUB_ENV
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if: matrix.use_dap == 'dap_on'
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- run: echo "ENABLE_NCZARR=--disable-nczarr" >> $GITHUB_ENV
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if: matrix.use_nczarr == 'nczarr_off'
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- run: echo "ENABLE_NCZARR=--enable-nczarr" >> $GITHUB_ENV
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if: matrix.use_nczarr == 'nczarr_on'
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###
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# Fetch Cache
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###
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- name: Fetch HDF Cache
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id: cache-hdf-osx
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Check Cache
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shell: bash -l {0}
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run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
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###
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# Configure and build
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###
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- name: Install autoconf
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shell: bash -l {0}
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run: brew install automake
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- name: Run autoconf
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shell: bash -l {0}
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run: autoreconf -if
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- name: Configure
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}
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if: ${{ success() }}
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- name: Look at config.log if error
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shell: bash -l {0}
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run: cat config.log
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if: ${{ failure() }}
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- name: Print Summary
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shell: bash -l {0}
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run: cat libnetcdf.settings
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- name: Build Library and Utilities
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
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if: ${{ success() }}
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- name: Build Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
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if: ${{ success() }}
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- name: Run Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
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if: ${{ success() }}
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# - name: Make Distcheck
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# shell: bash -l {0}
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# run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} DISTCHECK_CONFIGURE_FLAGS="${ENABLE_HDF4} ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}" make distcheck
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# if: ${{ success() }}
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#- name: Start SSH Debug
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# uses: luchihoratiu/debug-via-ssh@main
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# with:
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# NGROK_AUTH_TOKEN: ${{ secrets.NGROK_AUTH_TOKEN }}
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# SSH_PASS: ${{ secrets.SSH_PASS }}
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# if: ${{ failure() }}
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nc-cmake-osx:
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needs: [ nc-cmake-tests-oneoff-osx, nc-ac-tests-oneoff-osx ]
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runs-on: macos-11
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strategy:
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matrix:
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hdf5: [ 1.12.1 ]
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use_nc4: [ nc3, nc4 ]
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use_dap: [ dap_off, dap_on ]
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use_nczarr: [ nczarr_off, nczarr_on ]
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steps:
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- uses: actions/checkout@v2
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###
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# Set Environmental Variables
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###
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- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
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- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- run: |
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echo "ENABLE_HDF4=OFF" >> $GITHUB_ENV
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echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV
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if: matrix.use_nc4 == 'nc3'
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- run: |
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echo "ENABLE_HDF4=ON" >> $GITHUB_ENV
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echo "ENABLE_HDF5=ON" >> $GITHUB_ENV
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if: matrix.use_nc4 == 'nc4'
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- run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV
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if: matrix.use_dap == 'dap_off'
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- run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV
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if: matrix.use_dap == 'dap_on'
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- run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV
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if: matrix.use_nczarr == 'nczarr_off'
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- run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV
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if: matrix.use_nczarr == 'nczarr_on'
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- run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
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###
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# Fetch Cache
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###
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- name: Fetch HDF Cache
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id: cache-hdf5-osx
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Check Cache
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shell: bash -l {0}
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run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
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###
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# Configure and build
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###
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- name: Perform out-of-directory build
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shell: bash -l {0}
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run: |
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mkdir build
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=${ENABLE_DAP} -DENABLE_HDF5=${ENABLE_HDF5} -DENABLE_NCZARR=${ENABLE_NCZARR}
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- name: Print Summary
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shell: bash -l {0}
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run: |
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cd build
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cat libnetcdf.settings
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- name: Build All
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
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if: ${{ success() }}
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- name: Run Tests
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --verbose -j 12 .
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if: ${{ success() }}
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- name: Verbose Output if CTest Failure
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
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if: ${{ failure() }}
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#####
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# One-Off Autotools-based tests.
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#####
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nc-ac-tests-oneoff-osx:
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needs: build-deps-osx
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runs-on: macos-11
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strategy:
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matrix:
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hdf5: [ 1.12.1 ]
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steps:
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- uses: actions/checkout@v2
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###
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# Set Environmental Variables
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###
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- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
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- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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###
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# Fetch Cache
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###
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- name: Fetch HDF Cache
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id: cache-hdf-osx
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Check Cache
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shell: bash -l {0}
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run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
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###
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# Configure and build
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###
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- name: Install autoconf
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shell: bash -l {0}
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run: brew install automake
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- name: Run autoconf
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shell: bash -l {0}
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run: autoreconf -if
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- name: Configure
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --enable-hdf5 --enable-dap --disable-dap-remote-tests
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if: ${{ success() }}
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- name: Look at config.log if error
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shell: bash -l {0}
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run: cat config.log
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if: ${{ failure() }}
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- name: Print Summary
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shell: bash -l {0}
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run: cat libnetcdf.settings
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- name: Build Library and Utilities
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
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if: ${{ success() }}
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- name: Build Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
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if: ${{ success() }}
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- name: Run Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
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if: ${{ success() }}
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#####
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# One-Off CMake-based tests.
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#####
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nc-cmake-tests-oneoff-osx:
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needs: build-deps-osx
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runs-on: macos-11
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strategy:
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matrix:
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hdf5: [ 1.12.1 ]
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steps:
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- uses: actions/checkout@v2
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###
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# Set Environmental Variables
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###
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- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
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- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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###
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# Fetch Cache
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###
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- name: Fetch HDF Cache
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id: cache-hdf5-osx
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Check Cache
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shell: bash -l {0}
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run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
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###
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# Configure and build
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###
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- name: Perform out-of-directory build
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shell: bash -l {0}
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run: |
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mkdir build
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=TRUE -DENABLE_HDF5=TRUE -DENABLE_NCZARR=TRUE -D ENABLE_DAP_LONG_TESTS=TRUE
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- name: Print Summary
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shell: bash -l {0}
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run: |
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cd build
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cat libnetcdf.settings
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- name: Build All
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
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if: ${{ success() }}
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- name: Run Tests
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --output-on-failure -j 12 .
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if: ${{ success() }}
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- name: Verbose Output if CTest Failure
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
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if: ${{ failure() }}
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