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netcdf-c/ncgen3/ncgen.y
Dennis Heimbigner 3db4f013bf Primary change: add dap4 support 
Specific changes:
1. Add dap4 code: libdap4 and dap4_test.
   Note that until the d4ts server problem is solved, dap4 is turned off.
2. Modify various files to support dap4 flags:
	configure.ac, Makefile.am, CMakeLists.txt, etc.
3. Add nc_test/test_common.sh. This centralizes
   the handling of the locations of various
   things in the build tree: e.g. where is
   ncgen.exe located. See nc_test/test_common.sh
   for details.
4. Modify .sh files to use test_common.sh
5. Obsolete separate oc2 by moving it to be part of
   netcdf-c. This means replacing code with netcdf-c
   equivalents.
5. Add --with-testserver to configure.ac to allow
   override of the servers to be used for --enable-dap-remote-tests.
6. There were multiple versions of nctypealignment code. Try to
   centralize in libdispatch/doffset.c and include/ncoffsets.h
7. Add a unit test for the ncuri code because of its complexity.
8. Move the findserver code out of libdispatch and into
   a separate, self contained program in ncdap_test and dap4_test.
9. Move the dispatch header files (nc{3,4}dispatch.h) to
   .../include because they are now shared by modules.
10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts.
11. Make use of MREMAP if available
12. Misc. minor changes e.g.
	- #include <config.h> -> #include "config.h"
	- Add some no-install headers to /include
	- extern -> EXTERNL and vice versa as needed
	- misc header cleanup
	- clean up checking for misc. unix vs microsoft functions
13. Change copyright decls in some files to point to LICENSE file.
14. Add notes to RELEASENOTES.md
2017-03-08 17:01:10 -07:00

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/*********************************************************************
* Copyright 1993, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
* $Id: ncgen.y,v 1.34 2010/03/31 18:18:41 dmh Exp $
*********************************************************************/
/* yacc source for "ncgen", a netCDL parser and netCDF generator */
%{
#ifdef sccs
static char SccsId[] = "$Id: ncgen.y,v 1.34 2010/03/31 18:18:41 dmh Exp $";
#endif
#include "config.h"
#include <string.h>
#include <stdlib.h>
#include "netcdf.h"
#include "generic.h"
#include "ncgen.h"
#include "genlib.h" /* for grow_darray() et al */
typedef struct Symbol { /* symbol table entry */
char *name;
struct Symbol *next;
unsigned is_dim : 1; /* appears as netCDF dimension */
unsigned is_var : 1; /* appears as netCDF variable */
unsigned is_att : 1; /* appears as netCDF attribute */
int dnum; /* handle as a dimension */
int vnum; /* handle as a variable */
} *YYSTYPE1;
/* True if string a equals string b*/
#ifndef STREQ
#define STREQ(a, b) (*(a) == *(b) && strcmp((a), (b)) == 0)
#endif
#define NC_UNSPECIFIED ((nc_type)0) /* unspecified (as yet) type */
#define YYSTYPE YYSTYPE1
YYSTYPE symlist; /* symbol table: linked list */
extern int derror_count; /* counts errors in netcdf definition */
extern int lineno; /* line number for error messages */
static int not_a_string; /* whether last constant read was a string */
static char termstring[MAXTRST]; /* last terminal string read */
static double double_val; /* last double value read */
static float float_val; /* last float value read */
static int int_val; /* last int value read */
static short short_val; /* last short value read */
static char char_val; /* last char value read */
static signed char byte_val; /* last byte value read */
static nc_type type_code; /* holds declared type for variables */
static nc_type atype_code; /* holds derived type for attributes */
static char *netcdfname; /* to construct netcdf file name */
static void *att_space; /* pointer to block for attribute values */
static nc_type valtype; /* type code for list of attribute values */
static char *char_valp; /* pointers used to accumulate data values */
static signed char *byte_valp;
static short *short_valp;
static int *int_valp;
static float *float_valp;
static double *double_valp;
static void *rec_cur; /* pointer to where next data value goes */
static void *rec_start; /* start of space for data */
/* Forward declarations */
void defatt();
void equalatt();
#ifdef YYLEX_PARAM
int yylex(YYLEX_PARAM);
#else
int yylex();
#endif
#ifdef vms
void yyerror(char*);
#else
int yyerror(char*);
#endif
%}
/* DECLARATIONS */
%token
NC_UNLIMITED_K /* keyword for unbounded record dimension */
BYTE_K /* keyword for byte datatype */
CHAR_K /* keyword for char datatype */
SHORT_K /* keyword for short datatype */
INT_K /* keyword for int datatype */
FLOAT_K /* keyword for float datatype */
DOUBLE_K /* keyword for double datatype */
IDENT /* name for a dimension, variable, or attribute */
TERMSTRING /* terminal string */
BYTE_CONST /* byte constant */
CHAR_CONST /* char constant */
SHORT_CONST /* short constant */
INT_CONST /* int constant */
FLOAT_CONST /* float constant */
DOUBLE_CONST /* double constant */
DIMENSIONS /* keyword starting dimensions section, if any */
VARIABLES /* keyword starting variables section, if any */
NETCDF /* keyword declaring netcdf name */
DATA /* keyword starting data section, if any */
FILLVALUE /* fill value, from _FillValue attribute or default */
%start ncdesc /* start symbol for grammar */
%%
/* RULES */
ncdesc: NETCDF
'{'
{ init_netcdf(); }
dimsection /* dimension declarations */
vasection /* variable and attribute declarations */
{
if (derror_count == 0)
define_netcdf(netcdfname);
if (derror_count > 0)
exit(6);
}
datasection /* data, variables loaded as encountered */
'}'
{
if (derror_count == 0)
close_netcdf();
}
;
dimsection: /* empty */
| DIMENSIONS dimdecls
;
dimdecls: dimdecline ';'
| dimdecls dimdecline ';'
;
dimdecline: dimdecl
| dimdecline ',' dimdecl
;
dimdecl: dimd '=' INT_CONST
{ if (int_val <= 0)
derror("dimension length must be positive");
dims[ndims].size = int_val;
ndims++;
}
| dimd '=' DOUBLE_CONST
{ /* for rare case where 2^31 < dimsize < 2^32 */
if (double_val <= 0)
derror("dimension length must be positive");
if (double_val > 4294967295.0)
derror("dimension too large");
if (double_val - (size_t) double_val > 0)
derror("dimension length must be an integer");
dims[ndims].size = (size_t) double_val;
ndims++;
}
| dimd '=' NC_UNLIMITED_K
{ if (rec_dim != -1)
derror("only one NC_UNLIMITED dimension allowed");
rec_dim = ndims; /* the unlimited (record) dimension */
dims[ndims].size = NC_UNLIMITED;
ndims++;
}
;
dimd: dim
{
if ($1->is_dim == 1) {
derror( "duplicate dimension declaration for %s",
$1->name);
}
$1->is_dim = 1;
$1->dnum = ndims;
/* make sure dims array will hold dimensions */
grow_darray(ndims, /* must hold ndims+1 dims */
&dims); /* grow as needed */
dims[ndims].name = (char *) emalloc(strlen($1->name)+1);
(void) strcpy(dims[ndims].name, $1->name);
/* name for use in generated Fortran and C variables */
dims[ndims].lname = decodify($1->name);
}
;
dim: IDENT
;
vasection: /* empty */
| VARIABLES vadecls
| gattdecls
;
vadecls: vadecl ';'
| vadecls vadecl ';'
;
vadecl: vardecl | attdecl | gattdecl
;
gattdecls: gattdecl ';'
| gattdecls gattdecl ';'
;
vardecl: type varlist
;
type: BYTE_K { type_code = NC_BYTE; }
| CHAR_K { type_code = NC_CHAR; }
| SHORT_K { type_code = NC_SHORT; }
| INT_K { type_code = NC_INT; }
| FLOAT_K { type_code = NC_FLOAT; }
| DOUBLE_K{ type_code = NC_DOUBLE; }
;
varlist: varspec
| varlist ',' varspec
;
varspec: var
{
static struct vars dummyvar;
dummyvar.name = "dummy";
dummyvar.type = NC_DOUBLE;
dummyvar.ndims = 0;
dummyvar.dims = 0;
dummyvar.fill_value.doublev = NC_FILL_DOUBLE;
dummyvar.has_data = 0;
nvdims = 0;
/* make sure variable not re-declared */
if ($1->is_var == 1) {
derror( "duplicate variable declaration for %s",
$1->name);
}
$1->is_var = 1;
$1->vnum = nvars;
/* make sure vars array will hold variables */
grow_varray(nvars, /* must hold nvars+1 vars */
&vars); /* grow as needed */
vars[nvars] = dummyvar; /* to make Purify happy */
vars[nvars].name = (char *) emalloc(strlen($1->name)+1);
(void) strcpy(vars[nvars].name, $1->name);
/* name for use in generated Fortran and C variables */
vars[nvars].lname = decodify($1->name);
vars[nvars].type = type_code;
/* set default fill value. You can override this with
* the variable attribute "_FillValue". */
nc_getfill(type_code, &vars[nvars].fill_value);
vars[nvars].has_data = 0; /* has no data (yet) */
}
dimspec
{
vars[nvars].ndims = nvdims;
nvars++;
}
;
var: IDENT
;
dimspec: /* empty */
| '(' dimlist ')'
;
dimlist: vdim
| dimlist ',' vdim
;
vdim: dim
{
if (nvdims >= NC_MAX_VAR_DIMS) {
derror("%s has too many dimensions",vars[nvars].name);
}
if ($1->is_dim == 1)
dimnum = $1->dnum;
else {
derror( "%s is not declared as a dimension",
$1->name);
dimnum = ndims;
}
if (rec_dim != -1 && dimnum == rec_dim && nvdims != 0) {
derror("unlimited dimension must be first");
}
grow_iarray(nvdims, /* must hold nvdims+1 ints */
&vars[nvars].dims); /* grow as needed */
vars[nvars].dims[nvdims] = dimnum;
nvdims++;
}
;
attdecl: att
{
defatt();
}
'=' attvallist
{
equalatt();
}
;
gattdecl: gatt
{
defatt();
}
'=' attvallist
{
equalatt();
}
;
att: avar ':' attr
gatt: ':' attr
{
varnum = NC_GLOBAL; /* handle of "global" attribute */
}
;
avar: var
{ if ($1->is_var == 1)
varnum = $1->vnum;
else {
derror("%s not declared as a variable, fatal error",
$1->name);
YYABORT;
}
}
;
attr: IDENT
{
/* make sure atts array will hold attributes */
grow_aarray(natts, /* must hold natts+1 atts */
&atts); /* grow as needed */
atts[natts].name = (char *) emalloc(strlen($1->name)+1);
(void) strcpy(atts[natts].name,$1->name);
/* name for use in generated Fortran and C variables */
atts[natts].lname = decodify($1->name);
}
;
attvallist: aconst
| attvallist ',' aconst
;
aconst: attconst
{
if (valtype == NC_UNSPECIFIED)
valtype = atype_code;
if (valtype != atype_code)
derror("values for attribute must be all of same type");
}
;
attconst: CHAR_CONST
{
atype_code = NC_CHAR;
*char_valp++ = char_val;
valnum++;
}
| TERMSTRING
{
atype_code = NC_CHAR;
{
/* don't null-terminate attribute strings */
size_t len = strlen(termstring);
if (len == 0) /* need null if that's only value */
len = 1;
(void)strncpy(char_valp,termstring,len);
valnum += len;
char_valp += len;
}
}
| BYTE_CONST
{
atype_code = NC_BYTE;
*byte_valp++ = byte_val;
valnum++;
}
| SHORT_CONST
{
atype_code = NC_SHORT;
*short_valp++ = short_val;
valnum++;
}
| INT_CONST
{
atype_code = NC_INT;
*int_valp++ = int_val;
valnum++;
}
| FLOAT_CONST
{
atype_code = NC_FLOAT;
*float_valp++ = float_val;
valnum++;
}
| DOUBLE_CONST
{
atype_code = NC_DOUBLE;
*double_valp++ = double_val;
valnum++;
}
;
datasection: /* empty */
| DATA datadecls
| DATA
;
datadecls: datadecl ';'
| datadecls datadecl ';'
;
datadecl: avar
{
valtype = vars[varnum].type; /* variable type */
valnum = 0; /* values accumulated for variable */
vars[varnum].has_data = 1;
/* compute dimensions product */
var_size = nctypesize(valtype);
if (vars[varnum].ndims == 0) { /* scalar */
var_len = 1;
} else if (vars[varnum].dims[0] == rec_dim) {
var_len = 1; /* one record for unlimited vars */
} else {
var_len = dims[vars[varnum].dims[0]].size;
}
for(dimnum = 1; dimnum < vars[varnum].ndims; dimnum++)
var_len = var_len*dims[vars[varnum].dims[dimnum]].size;
/* allocate memory for variable data */
if (var_len*var_size != (size_t)(var_len*var_size)) {
derror("variable %s too large for memory",
vars[varnum].name);
exit(9);
}
rec_len = var_len;
rec_start = malloc ((size_t)(rec_len*var_size));
if (rec_start == 0) {
derror ("out of memory\n");
exit(3);
}
rec_cur = rec_start;
switch (valtype) {
case NC_CHAR:
char_valp = (char *) rec_start;
break;
case NC_BYTE:
byte_valp = (signed char *) rec_start;
break;
case NC_SHORT:
short_valp = (short *) rec_start;
break;
case NC_INT:
int_valp = (int *) rec_start;
break;
case NC_FLOAT:
float_valp = (float *) rec_start;
break;
case NC_DOUBLE:
double_valp = (double *) rec_start;
break;
default: break;
}
}
'=' constlist
{
if (valnum < var_len) { /* leftovers */
nc_fill(valtype,
var_len - valnum,
rec_cur,
vars[varnum].fill_value);
}
/* put out var_len values */
/* vars[varnum].nrecs = valnum / rec_len; */
vars[varnum].nrecs = var_len / rec_len;
if (derror_count == 0)
put_variable(rec_start);
free ((char *) rec_start);
}
;
constlist: dconst
| constlist ',' dconst
;
dconst:
{
if(valnum >= var_len) {
if (vars[varnum].dims[0] != rec_dim) { /* not recvar */
derror("too many values for this variable, %d >= %d",
valnum, var_len);
exit (4);
} else { /* a record variable, so grow data
container and increment var_len by
multiple of record size */
ptrdiff_t rec_inc = (char *)rec_cur
- (char *)rec_start;
var_len = rec_len * (1 + valnum / rec_len);
rec_start = erealloc(rec_start, var_len*var_size);
rec_cur = (char *)rec_start + rec_inc;
char_valp = (char *) rec_cur;
byte_valp = (signed char *) rec_cur;
short_valp = (short *) rec_cur;
int_valp = (int *) rec_cur;
float_valp = (float *) rec_cur;
double_valp = (double *) rec_cur;
}
}
not_a_string = 1;
}
const
{
if (not_a_string) {
switch (valtype) {
case NC_CHAR:
rec_cur = (void *) char_valp;
break;
case NC_BYTE:
rec_cur = (void *) byte_valp;
break;
case NC_SHORT:
rec_cur = (void *) short_valp;
break;
case NC_INT:
rec_cur = (void *) int_valp;
break;
case NC_FLOAT:
rec_cur = (void *) float_valp;
break;
case NC_DOUBLE:
rec_cur = (void *) double_valp;
break;
default: break;
}
}
}
;
const: CHAR_CONST
{
atype_code = NC_CHAR;
switch (valtype) {
case NC_CHAR:
*char_valp++ = char_val;
break;
case NC_BYTE:
*byte_valp++ = char_val;
break;
case NC_SHORT:
*short_valp++ = char_val;
break;
case NC_INT:
*int_valp++ = char_val;
break;
case NC_FLOAT:
*float_valp++ = char_val;
break;
case NC_DOUBLE:
*double_valp++ = char_val;
break;
default: break;
}
valnum++;
}
| TERMSTRING
{
not_a_string = 0;
atype_code = NC_CHAR;
{
size_t len = strlen(termstring);
if(valnum + len > var_len) {
if (vars[varnum].dims[0] != rec_dim) {
derror("too many values for this variable, %d>%d",
valnum+len, var_len);
exit (5);
} else {/* a record variable so grow it */
ptrdiff_t rec_inc = (char *)rec_cur
- (char *)rec_start;
var_len += rec_len * (len + valnum - var_len)/rec_len;
rec_start = erealloc(rec_start, var_len*var_size);
rec_cur = (char *)rec_start + rec_inc;
char_valp = (char *) rec_cur;
}
}
switch (valtype) {
case NC_CHAR:
{
int ld;
size_t i, sl;
(void)strncpy(char_valp,termstring,len);
ld = vars[varnum].ndims-1;
if (ld > 0) {/* null-fill to size of last dim */
sl = dims[vars[varnum].dims[ld]].size;
for (i =len;i<sl;i++)
char_valp[i] = '\0';
if (sl < len)
sl = len;
valnum += sl;
char_valp += sl;
} else { /* scalar or 1D strings */
valnum += len;
char_valp += len;
}
rec_cur = (void *) char_valp;
}
break;
case NC_BYTE:
case NC_SHORT:
case NC_INT:
case NC_FLOAT:
case NC_DOUBLE:
derror("string value invalid for %s variable",
nctype(valtype));
break;
default: break;
}
}
}
| BYTE_CONST
{
atype_code = NC_BYTE;
switch (valtype) {
case NC_CHAR:
*char_valp++ = byte_val;
break;
case NC_BYTE:
*byte_valp++ = byte_val;
break;
case NC_SHORT:
*short_valp++ = byte_val;
break;
case NC_INT:
*int_valp++ = byte_val;
break;
case NC_FLOAT:
*float_valp++ = byte_val;
break;
case NC_DOUBLE:
*double_valp++ = byte_val;
break;
default: break;
}
valnum++;
}
| SHORT_CONST
{
atype_code = NC_SHORT;
switch (valtype) {
case NC_CHAR:
*char_valp++ = short_val;
break;
case NC_BYTE:
*byte_valp++ = short_val;
break;
case NC_SHORT:
*short_valp++ = short_val;
break;
case NC_INT:
*int_valp++ = short_val;
break;
case NC_FLOAT:
*float_valp++ = short_val;
break;
case NC_DOUBLE:
*double_valp++ = short_val;
break;
default: break;
}
valnum++;
}
| INT_CONST
{
atype_code = NC_INT;
switch (valtype) {
case NC_CHAR:
*char_valp++ = int_val;
break;
case NC_BYTE:
*byte_valp++ = int_val;
break;
case NC_SHORT:
*short_valp++ = int_val;
break;
case NC_INT:
*int_valp++ = int_val;
break;
case NC_FLOAT:
*float_valp++ = int_val;
break;
case NC_DOUBLE:
*double_valp++ = int_val;
break;
default: break;
}
valnum++;
}
| FLOAT_CONST
{
atype_code = NC_FLOAT;
switch (valtype) {
case NC_CHAR:
*char_valp++ = float_val;
break;
case NC_BYTE:
*byte_valp++ = float_val;
break;
case NC_SHORT:
*short_valp++ = float_val;
break;
case NC_INT:
*int_valp++ = float_val;
break;
case NC_FLOAT:
*float_valp++ = float_val;
break;
case NC_DOUBLE:
*double_valp++ = float_val;
break;
default: break;
}
valnum++;
}
| DOUBLE_CONST
{
atype_code = NC_DOUBLE;
switch (valtype) {
case NC_CHAR:
*char_valp++ = double_val;
break;
case NC_BYTE:
*byte_valp++ = double_val;
break;
case NC_SHORT:
*short_valp++ = double_val;
break;
case NC_INT:
*int_valp++ = double_val;
break;
case NC_FLOAT:
if (double_val == NC_FILL_DOUBLE)
*float_valp++ = NC_FILL_FLOAT;
else
*float_valp++ = double_val;
break;
case NC_DOUBLE:
*double_valp++ = double_val;
break;
default: break;
}
valnum++;
}
| FILLVALUE
{
/* store fill_value */
switch (valtype) {
case NC_CHAR:
nc_fill(valtype, 1, (void *)char_valp++,
vars[varnum].fill_value);
break;
case NC_BYTE:
nc_fill(valtype, 1, (void *)byte_valp++,
vars[varnum].fill_value);
break;
case NC_SHORT:
nc_fill(valtype, 1, (void *)short_valp++,
vars[varnum].fill_value);
break;
case NC_INT:
nc_fill(valtype, 1, (void *)int_valp++,
vars[varnum].fill_value);
break;
case NC_FLOAT:
nc_fill(valtype, 1, (void *)float_valp++,
vars[varnum].fill_value);
break;
case NC_DOUBLE:
nc_fill(valtype, 1, (void *)double_valp++,
vars[varnum].fill_value);
break;
default: break;
}
valnum++;
}
;
/* END OF RULES */
%%
/* HELPER PROGRAMS */
void defatt()
{
valnum = 0;
valtype = NC_UNSPECIFIED;
/* get a large block for attributes, realloc later */
att_space = emalloc(MAX_NC_ATTSIZE);
/* make all kinds of pointers point to it */
char_valp = (char *) att_space;
byte_valp = (signed char *) att_space;
short_valp = (short *) att_space;
int_valp = (int *) att_space;
float_valp = (float *) att_space;
double_valp = (double *) att_space;
}
void equalatt()
{
/* check if duplicate attribute for this var */
int i;
for(i=0; i<natts; i++) { /* expensive */
if(atts[i].var == varnum &&
STREQ(atts[i].name,atts[natts].name)) {
derror("duplicate attribute %s:%s",
vars[varnum].name,atts[natts].name);
}
}
atts[natts].var = varnum ;
atts[natts].type = valtype;
atts[natts].len = valnum;
/* shrink space down to what was really needed */
att_space = erealloc(att_space, valnum*nctypesize(valtype));
atts[natts].val = att_space;
if (STREQ(atts[natts].name, _FillValue) &&
atts[natts].var != NC_GLOBAL) {
nc_putfill(atts[natts].type,atts[natts].val,
&vars[atts[natts].var].fill_value);
if(atts[natts].type != vars[atts[natts].var].type) {
derror("variable %s: %s type mismatch",
vars[atts[natts].var].name, _FillValue);
}
}
natts++;
}
/* PROGRAMS */
#ifdef vms
void
#else
int
#endif
yyerror( /* called for yacc syntax error */
char *s)
{
derror(s);
#ifndef vms
return -1;
#endif
}
/* undefine yywrap macro, in case we are using bison instead of yacc */
#ifdef yywrap
#undef yywrap
#endif
int
ncgwrap(void) /* returns 1 on EOF if no more input */
{
return 1;
}
/* Symbol table operations for ncgen tool */
/* Find CDL name in symbol table (linear search). Note, this has a
* side-effect: it handles escape characters in the name, deleting
* single escape characters from the CDL name, before looking it up.
*/
YYSTYPE lookup(char *sname)
{
YYSTYPE sp;
deescapify(sname); /* delete escape chars from names,
* e.g. 'ab\:cd\ ef' becomes
* 'ab:cd ef' */
for (sp = symlist; sp != (YYSTYPE) 0; sp = sp -> next)
if (STREQ(sp -> name, sname)) {
return sp;
}
return 0; /* 0 ==> not found */
}
YYSTYPE install( /* install sname in symbol table */
const char *sname)
{
YYSTYPE sp;
sp = (YYSTYPE) emalloc (sizeof (struct Symbol));
sp -> name = (char *) emalloc (strlen (sname) + 1);/* +1 for '\0' */
(void) strcpy (sp -> name, sname);
sp -> next = symlist; /* put at front of list */
sp -> is_dim = 0;
sp -> is_var = 0;
sp -> is_att = 0;
symlist = sp;
return sp;
}
void
clearout(void) /* reset symbol table to empty */
{
YYSTYPE sp, tp;
for (sp = symlist; sp != (YYSTYPE) 0;) {
tp = sp -> next;
free (sp -> name);
free ((char *) sp);
sp = tp;
}
symlist = 0;
}
/* get lexical input routine generated by lex */
/* Keep compile quiet */
#define YY_NO_UNPUT
#define YY_NO_INPUT
#include "ncgenyy.c"
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