mirror of
https://github.com/Unidata/netcdf-c.git
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562 lines
20 KiB
C
562 lines
20 KiB
C
/* This is part of the netCDF package. Copyright 2018 University
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Corporation for Atmospheric Research/Unidata See COPYRIGHT file for
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conditions of use.
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Test HDF5 dataset code, even more. These are not intended to be
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exhaustive tests, but they use HDF5 the same way that netCDF-4
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does, so if these tests don't work, than netCDF-4 won't work
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either.
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*/
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#include "h5_err_macros.h"
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#include <hdf5.h>
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#include <H5DSpublic.h>
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#define FILE_NAME "tst_h_vars2.h5"
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#define STR_LEN 255
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int
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main()
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{
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printf("\n*** Checking HDF5 variable functions some more.\n");
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/* If HDF5 has working ordering of variables, then the following
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* test will work.*/
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printf("*** Checking HDF5 variable ordering...");
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#define NUM_ELEMENTS 6
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#define MAX_SYMBOL_LEN 2
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#define ELEMENTS_NAME "Elements"
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{
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hid_t did[NUM_ELEMENTS], fapl_id, fcpl_id, gcpl_id;
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hsize_t num_obj;
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hid_t fileid, grpid, spaceid;
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int i;
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H5O_info_t obj_info;
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char names[NUM_ELEMENTS][MAX_SYMBOL_LEN + 1] = {"H", "He", "Li", "Be", "B", "C"};
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char name[MAX_SYMBOL_LEN + 1];
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ssize_t size;
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/* Create file, setting latest_format in access propertly list
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* and H5P_CRT_ORDER_TRACKED in the creation property list. */
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if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
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if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
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if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
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if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
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if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
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/* Create group, with link_creation_order set in the group
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* creation property list. */
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if ((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) ERR;
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if (H5Pset_link_creation_order(gcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
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if ((grpid = H5Gcreate_anon(fileid, gcpl_id, H5P_DEFAULT)) < 0) ERR;
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if ((H5Olink(grpid, fileid, ELEMENTS_NAME, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR;
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/* Create a scalar space. */
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if ((spaceid = H5Screate(H5S_SCALAR)) < 0) ERR;
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/* Create the variables, one per element. */
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for (i = 0; i < NUM_ELEMENTS; i++)
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{
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if ((did[i] = H5Dcreate(grpid, names[i], H5T_NATIVE_INT,
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spaceid, H5P_DEFAULT)) < 0) ERR;
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if (H5Dclose(did[i]) < 0) ERR;
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}
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if (H5Pclose(fapl_id) < 0 ||
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H5Pclose(gcpl_id) < 0 ||
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H5Sclose(spaceid) < 0 ||
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H5Gclose(grpid) < 0 ||
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H5Fclose(fileid) < 0)
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ERR;
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/* Now reopen the file and check the order. */
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if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
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if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
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if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
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if ((grpid = H5Gopen(fileid, ELEMENTS_NAME)) < 0) ERR;
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if (H5Gget_num_objs(grpid, &num_obj) < 0) ERR;
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if (num_obj != NUM_ELEMENTS) ERR;
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for (i = 0; i < num_obj; i++)
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{
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if (H5Oget_info_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC,
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i, &obj_info, H5P_DEFAULT) < 0) ERR;
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if (obj_info.type != H5O_TYPE_DATASET) ERR;
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if ((size = H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i,
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NULL, 0, H5P_DEFAULT)) < 0) ERR;
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H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i,
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name, size+1, H5P_DEFAULT);
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if (strcmp(name, names[i])) ERR;
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}
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if (H5Pclose(fapl_id) < 0 ||
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H5Gclose(grpid) < 0 ||
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H5Fclose(fileid) < 0)
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ERR;
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}
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SUMMARIZE_ERR;
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printf("*** Checking HDF5 variable ordering in root group...");
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#define NUM_DIMSCALES 2
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#define MAX_SYMBOL_LEN 2
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#define DIM1_LEN 3
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#define DIMSCALE_NAME "Joe"
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#define NAME_ATTRIBUTE "short"
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{
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hid_t fapl_id, fcpl_id;
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hid_t fileid, grpid;
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hsize_t num_obj;
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int i;
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H5O_info_t obj_info;
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char names[NUM_DIMSCALES][MAX_SYMBOL_LEN + 1] = {"b", "a"};
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char name[MAX_SYMBOL_LEN + 1];
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hid_t dimscaleid;
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hid_t dimscale_spaceid;
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hsize_t dimscale_dims[1] = {DIM1_LEN};
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ssize_t size;
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/* Create file, setting latest_format in access propertly list
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* and H5P_CRT_ORDER_TRACKED in the creation property list. */
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if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
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if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
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if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
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if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
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if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
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if ((dimscale_spaceid = H5Screate_simple(1, dimscale_dims,
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dimscale_dims)) < 0) ERR;
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/* Create the variables, one per element. */
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for (i = 0; i < NUM_DIMSCALES; i++)
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{
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/* Create our dimension scale. Use the built-in NAME attribute
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* on the dimscale. */
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if ((dimscaleid = H5Dcreate(fileid, names[i], H5T_NATIVE_INT,
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dimscale_spaceid, H5P_DEFAULT)) < 0) ERR;
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if (H5DSset_scale(dimscaleid, NAME_ATTRIBUTE) < 0) ERR;
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if (H5Dclose(dimscaleid) < 0) ERR;
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}
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if (H5Pclose(fapl_id) < 0 ||
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H5Pclose(fcpl_id) < 0 ||
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H5Sclose(dimscale_spaceid) < 0 ||
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H5Fclose(fileid) < 0)
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ERR;
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/* Now reopen the file and check the order. */
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if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
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if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
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if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
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if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
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if (H5Gget_num_objs(grpid, &num_obj) < 0) ERR;
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if (num_obj != NUM_DIMSCALES) ERR;
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for (i = 0; i < num_obj; i++)
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{
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if (H5Oget_info_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC,
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i, &obj_info, H5P_DEFAULT) < 0) ERR;
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if (obj_info.type != H5O_TYPE_DATASET) ERR;
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if ((size = H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i,
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NULL, 0, H5P_DEFAULT)) < 0) ERR;
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if (H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i,
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name, size+1, H5P_DEFAULT) < 0) ERR;
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if (strcmp(name, names[i])) ERR;
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}
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if (H5Pclose(fapl_id) < 0 ||
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H5Gclose(grpid) < 0 ||
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H5Fclose(fileid) < 0)
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ERR;
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}
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SUMMARIZE_ERR;
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printf("*** Checking HDF5 variable ordering flags with redef-type situations...");
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#define NUM_ELEMENTS 6
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#define MAX_NAME_LEN 50
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#define ELEMENTS_NAME "Elements"
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#define VAR_NAME "Sears_Zemansky_and_Young"
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{
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hid_t did, fapl_id, fcpl_id, gcpl_id, attid;
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hsize_t num_obj;
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hid_t fileid, grpid, spaceid;
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float val = 3.1495;
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H5O_info_t obj_info;
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char name[MAX_NAME_LEN + 1];
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ssize_t size;
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/* Create file, setting latest_format in access propertly list
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* and H5P_CRT_ORDER_TRACKED in the creation property list. */
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if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
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if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
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if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
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if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
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if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
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/* Create group, with link_creation_order set in the group
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* creation property list. */
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if ((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) ERR;
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if (H5Pset_link_creation_order(gcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
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if ((grpid = H5Gcreate_anon(fileid, gcpl_id, H5P_DEFAULT)) < 0) ERR;
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if ((H5Olink(grpid, fileid, ELEMENTS_NAME, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR;
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/* Create a scalar space. */
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if ((spaceid = H5Screate(H5S_SCALAR)) < 0) ERR;
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/* Create a scalar variable. */
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if ((did = H5Dcreate(grpid, VAR_NAME, H5T_NATIVE_INT,
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spaceid, H5P_DEFAULT)) < 0) ERR;
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if (H5Dclose(did) < 0) ERR;
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/* Flush the HDF5 buffers. */
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H5Fflush(fileid, H5F_SCOPE_GLOBAL);
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/* Delete the variable. Just to be mean. */
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if (H5Gunlink(grpid, VAR_NAME) < 0) ERR;
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/* Re-reate the scalar variable. */
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if ((did = H5Dcreate(grpid, VAR_NAME, H5T_NATIVE_INT,
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spaceid, H5P_DEFAULT)) < 0) ERR;
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/* Add an attribute. */
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if ((attid = H5Acreate(did, "Some_Attribute", H5T_NATIVE_FLOAT, spaceid,
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H5P_DEFAULT)) < 0) ERR;
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if (H5Awrite(attid, H5T_NATIVE_FLOAT, &val) < 0) ERR;
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if (H5Aclose(attid) < 0) ERR;
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if (H5Dclose(did) < 0) ERR;
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if (H5Pclose(fapl_id) < 0 ||
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H5Pclose(gcpl_id) < 0 ||
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H5Sclose(spaceid) < 0 ||
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H5Gclose(grpid) < 0 ||
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H5Fclose(fileid) < 0)
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ERR;
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/* Now reopen the file and check the order. */
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if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
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if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
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if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
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if ((grpid = H5Gopen(fileid, ELEMENTS_NAME)) < 0) ERR;
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if (H5Gget_num_objs(grpid, &num_obj) < 0) ERR;
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if (num_obj != 1) ERR;
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if (H5Oget_info_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC,
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0, &obj_info, H5P_DEFAULT) < 0) ERR;
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if (obj_info.type != H5O_TYPE_DATASET) ERR;
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if ((size = H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, 0,
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NULL, 0, H5P_DEFAULT)) < 0) ERR;
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H5Lget_name_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, 0,
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name, size+1, H5P_DEFAULT);
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if (strcmp(name, VAR_NAME)) ERR;
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if (H5Pclose(fapl_id) < 0 ||
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H5Gclose(grpid) < 0 ||
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H5Fclose(fileid) < 0)
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ERR;
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}
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SUMMARIZE_ERR;
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printf("*** Checking HDF5 variable compession and filters...");
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{
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#define NUM_ELEMENTS 6
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#define MAX_NAME_LEN 50
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#define ELEMENTS_NAME "Elements"
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#define VAR_NAME "Sears_Zemansky_and_Young"
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#define NDIMS 2
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#define NX 60
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#define NY 120
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#define DEFLATE_LEVEL 3
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#define SIMPLE_VAR_NAME "data"
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hid_t fapl_id, fcpl_id;
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hid_t datasetid;
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hid_t fileid, grpid, spaceid, plistid;
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int data_in[NX][NY], data_out[NX][NY];
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hsize_t fdims[NDIMS], fmaxdims[NDIMS];
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hsize_t chunksize[NDIMS], dimsize[NDIMS], maxdimsize[NDIMS];
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int x, y;
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/* Create some data to write. */
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for (x = 0; x < NX; x++)
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for (y = 0; y < NY; y++)
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data_out[x][y] = x * NY + y;
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/* Create file, setting latest_format in access propertly list
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* and H5P_CRT_ORDER_TRACKED in the creation property list. */
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if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
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if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
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if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
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if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
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if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
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if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
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dimsize[0] = maxdimsize[0] = NX;
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dimsize[1] = maxdimsize[1] = NY;
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if ((spaceid = H5Screate_simple(NDIMS, dimsize, maxdimsize)) < 0) ERR;
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/* Create property lust. */
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if ((plistid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR;
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/* Set up chunksizes. */
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chunksize[0] = NX;
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chunksize[1] = NY;
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if (H5Pset_chunk(plistid, NDIMS, chunksize) < 0)ERR;
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/* Set up compression. */
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if (H5Pset_deflate(plistid, DEFLATE_LEVEL) < 0) ERR;
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/* Create the variable. */
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if ((datasetid = H5Dcreate(grpid, SIMPLE_VAR_NAME, H5T_NATIVE_INT,
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spaceid, plistid)) < 0) ERR;
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/* Write the data. */
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if (H5Dwrite(datasetid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
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H5P_DEFAULT, data_out) < 0) ERR;
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if (H5Dclose(datasetid) < 0) ERR;
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if (H5Pclose(fapl_id) < 0 ||
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H5Sclose(spaceid) < 0 ||
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H5Gclose(grpid) < 0 ||
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H5Fclose(fileid) < 0)
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ERR;
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/* Now reopen the file and check the order. */
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if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
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if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
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if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
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if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
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if ((datasetid = H5Dopen1(grpid, SIMPLE_VAR_NAME)) < 0) ERR;
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if ((spaceid = H5Dget_space(datasetid)) < 0)
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if (H5Sget_simple_extent_dims(spaceid, fdims, fmaxdims) > 0) ERR;
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if (H5Dread(datasetid, H5T_NATIVE_INT, H5S_ALL,
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spaceid, H5P_DEFAULT, data_in) < 0) ERR;
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/* Check the data. */
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for (x = 0; x < NX; x++)
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for (y = 0; y < NY; y++)
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if (data_in[x][y] != data_out[x][y]) ERR_RET;
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if (H5Pclose(fapl_id) < 0 ||
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H5Dclose(datasetid) < 0 ||
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H5Sclose(spaceid) < 0 ||
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H5Gclose(grpid) < 0 ||
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H5Fclose(fileid) < 0)
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ERR;
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}
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SUMMARIZE_ERR;
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/* I can't get this to work, I don't think it's allowed in HDF5. - Ed 7/12/7 */
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/* printf("*** Checking HDF5 scalar variable compession..."); */
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/* #define MAX_NAME_LEN 50 */
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/* #define DEFLATE_LEVEL 3 */
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/* #define SIMPLE_VAR_NAME1 "punches" */
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/* { */
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/* hid_t fapl_id, fcpl_id; */
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/* hid_t datasetid; */
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/* hid_t fileid, grpid, spaceid, plistid; */
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/* int data_in, data_out = 42; */
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/* hsize_t chunksize = 1; */
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/* /\* Create file, setting latest_format in access propertly list */
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/* * and H5P_CRT_ORDER_TRACKED in the creation property list. *\/ */
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/* if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR; */
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/* if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;*/
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/* if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR; */
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/* if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR; */
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/* if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR; */
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/* if ((grpid = H5Gopen(fileid, "/")) < 0) ERR; */
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/* if ((spaceid = H5Screate(H5S_SCALAR)) < 0) ERR; */
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/* /\* Create property lust. *\/ */
|
|
/* if ((plistid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR; */
|
|
|
|
/* if (H5Pset_chunk(plistid, 1, &chunksize) < 0)ERR; */
|
|
|
|
/* /\* Set up compression. *\/ */
|
|
/* if (H5Pset_deflate(plistid, DEFLATE_LEVEL) < 0) ERR; */
|
|
|
|
/* /\* Create the variable. *\/ */
|
|
/* if ((datasetid = H5Dcreate(grpid, SIMPLE_VAR_NAME1, H5T_NATIVE_INT, */
|
|
/* spaceid, plistid)) < 0) ERR; */
|
|
|
|
/* /\* Write the data. *\/ */
|
|
/* if (H5Dwrite(datasetid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, */
|
|
/* H5P_DEFAULT, &data_out) < 0) ERR; */
|
|
|
|
/* if (H5Dclose(datasetid) < 0) ERR; */
|
|
/* if (H5Pclose(fapl_id) < 0 || */
|
|
/* H5Sclose(spaceid) < 0 || */
|
|
/* H5Gclose(grpid) < 0 || */
|
|
/* H5Fclose(fileid) < 0) */
|
|
/* ERR; */
|
|
|
|
/* /\* Now reopen the file and check. *\/ */
|
|
/* if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR; */
|
|
/* if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;*/
|
|
/* if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR; */
|
|
/* if ((grpid = H5Gopen(fileid, "/")) < 0) ERR; */
|
|
|
|
/* if ((datasetid = H5Dopen1(grpid, SIMPLE_VAR_NAME1)) < 0) ERR; */
|
|
/* if ((spaceid = H5Dget_space(datasetid)) < 0) */
|
|
/* if (H5Dread(datasetid, H5T_NATIVE_INT, H5S_ALL, */
|
|
/* spaceid, H5P_DEFAULT, &data_in) < 0) ERR; */
|
|
|
|
/* /\* Check the data. *\/ */
|
|
/* if (data_in != data_out) ERR; */
|
|
|
|
/* if (H5Pclose(fapl_id) < 0 || */
|
|
/* H5Dclose(datasetid) < 0 || */
|
|
/* H5Gclose(grpid) < 0 || */
|
|
/* H5Fclose(fileid) < 0) */
|
|
/* ERR; */
|
|
/* } */
|
|
/* SUMMARIZE_ERR; */
|
|
|
|
printf("*** Checking fill value of compound type...");
|
|
|
|
{
|
|
#define VAR_NAME2 "obs"
|
|
#define REF_FILE "ref_tst_compounds.nc"
|
|
#define ATT_NAME "_FillValue"
|
|
|
|
typedef struct obs_t {
|
|
char day ;
|
|
short elev;
|
|
int count;
|
|
float relhum;
|
|
double time;
|
|
} obs_t ;
|
|
|
|
obs_t f1, f2;
|
|
obs_t m = {-99, -99, -99, -99, -99};
|
|
hid_t fileid, grpid, attid, typeid, datasetid, native_typeid, propid;
|
|
H5D_fill_value_t fill_status;
|
|
char file_in[STR_LEN * 2];
|
|
size_t type_size;
|
|
|
|
if (getenv("srcdir"))
|
|
{
|
|
strcpy(file_in, getenv("srcdir"));
|
|
strcat(file_in, "/");
|
|
strcat(file_in, REF_FILE);
|
|
}
|
|
else
|
|
strcpy(file_in, REF_FILE);
|
|
|
|
/* Open file and read fill value of the variable. */
|
|
if ((fileid = H5Fopen(file_in, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) ERR;
|
|
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
|
|
if ((datasetid = H5Dopen1(grpid, VAR_NAME2)) < 0) ERR;
|
|
if ((propid = H5Dget_create_plist(datasetid)) < 0) ERR;
|
|
if (H5Pfill_value_defined(propid, &fill_status) < 0) ERR;
|
|
if (fill_status != H5D_FILL_VALUE_USER_DEFINED) ERR;
|
|
if ((typeid = H5Dget_type(datasetid)) < 0) ERR;
|
|
if ((native_typeid = H5Tget_native_type(typeid, H5T_DIR_DEFAULT)) < 0) ERR;
|
|
if (!(type_size = H5Tget_size(native_typeid))) ERR;
|
|
if (type_size != sizeof(obs_t)) ERR;
|
|
if (H5Pget_fill_value(propid, native_typeid, &f1) < 0) ERR;
|
|
if (f1.day != m.day || f1.elev != m.elev || f1.count != m.count ||
|
|
f1.relhum != m.relhum || f1.time != m.time) ERR;
|
|
|
|
/* It's also in an attribute, netCDF style. */
|
|
if ((attid = H5Aopen_name(datasetid, ATT_NAME)) < 0) ERR;
|
|
if ((typeid = H5Aget_type(attid)) < 0) ERR;
|
|
if ((native_typeid = H5Tget_native_type(typeid, H5T_DIR_DEFAULT)) < 0) ERR;
|
|
if (H5Aread(attid, native_typeid, &f2) < 0) ERR;
|
|
if (f2.day != m.day || f2.elev != m.elev || f2.count != m.count ||
|
|
f2.relhum != m.relhum || f2.time != m.time) ERR;
|
|
|
|
if (H5Dclose(datasetid) < 0 ||
|
|
H5Aclose(attid) < 0 ||
|
|
H5Tclose(native_typeid) < 0 ||
|
|
H5Tclose(typeid) < 0 ||
|
|
H5Pclose(propid) < 0 ||
|
|
H5Gclose(grpid) < 0 ||
|
|
H5Fclose(fileid) < 0) ERR;
|
|
|
|
}
|
|
SUMMARIZE_ERR;
|
|
printf("*** Checking HDF5 lots of datasets...");
|
|
{
|
|
#define NDIMS1 1
|
|
#define NUM_DATASETS 10000
|
|
#define CHUNKSIZE 1
|
|
|
|
hid_t fapl_id, fcpl_id;
|
|
hid_t datasetid[NUM_DATASETS];
|
|
hid_t fileid, grpid, spaceid, plistid;
|
|
hsize_t chunksize[NDIMS1], dimsize[NDIMS1], maxdimsize[NDIMS1];
|
|
char var_name[STR_LEN + 1];
|
|
int v;
|
|
|
|
/* Create file, setting latest_format in access propertly list
|
|
* and H5P_CRT_ORDER_TRACKED in the creation property list. */
|
|
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
|
|
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
|
|
if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR;
|
|
if (H5Pset_link_creation_order(fcpl_id, H5P_CRT_ORDER_TRACKED|H5P_CRT_ORDER_INDEXED) < 0) ERR;
|
|
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR;
|
|
|
|
/* Open root group. */
|
|
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
|
|
|
|
/* Create 1 D data space with unlimited dimension. */
|
|
dimsize[0] = 0;
|
|
maxdimsize[0] = H5S_UNLIMITED;
|
|
if ((spaceid = H5Screate_simple(NDIMS1, dimsize, maxdimsize)) < 0) ERR;
|
|
|
|
/* Create property list. */
|
|
if ((plistid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR;
|
|
|
|
/* Set up chunksizes. */
|
|
chunksize[0] = CHUNKSIZE;
|
|
if (H5Pset_chunk(plistid, NDIMS1, chunksize) < 0)ERR;
|
|
|
|
/* Create the variables. */
|
|
for (v = 0; v < NUM_DATASETS; v++)
|
|
{
|
|
sprintf(var_name, "var_%d", v);
|
|
/* printf("creating var %s\n", var_name);*/
|
|
if ((datasetid[v] = H5Dcreate(grpid, var_name, H5T_NATIVE_INT,
|
|
spaceid, plistid)) < 0) ERR_RET;
|
|
}
|
|
|
|
/* Close the datasets. */
|
|
for (v = 0; v < NUM_DATASETS; v++)
|
|
if (H5Dclose(datasetid[v]) < 0) ERR_RET;
|
|
|
|
/* Close everything. */
|
|
if (H5Pclose(fapl_id) < 0 ||
|
|
H5Sclose(spaceid) < 0 ||
|
|
H5Gclose(grpid) < 0 ||
|
|
H5Fclose(fileid) < 0)
|
|
ERR;
|
|
|
|
/* Now reopen the file and check. */
|
|
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
|
|
if (H5Pset_libver_bounds(fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) ERR;
|
|
if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, fapl_id)) < 0) ERR;
|
|
if ((grpid = H5Gopen(fileid, "/")) < 0) ERR;
|
|
|
|
/* if ((datasetid = H5Dopen1(grpid, SIMPLE_VAR_NAME)) < 0) ERR; */
|
|
/* if ((spaceid = H5Dget_space(datasetid)) < 0) */
|
|
/* if (H5Sget_simple_extent_dims(spaceid, fdims, fmaxdims) > 0) ERR; */
|
|
/* if (H5Dread(datasetid, H5T_NATIVE_INT, H5S_ALL, */
|
|
/* spaceid, H5P_DEFAULT, data_in) < 0) ERR; */
|
|
|
|
/* /\* Check the data. *\/ */
|
|
/* for (x = 0; x < NX; x++) */
|
|
/* for (y = 0; y < NY; y++) */
|
|
/* if (data_in[x][y] != data_out[x][y]) ERR_RET; */
|
|
|
|
if (H5Pclose(fapl_id) < 0 ||
|
|
/* H5Dclose(datasetid) < 0 ||
|
|
H5Sclose(spaceid) < 0 ||*/
|
|
H5Gclose(grpid) < 0 ||
|
|
H5Fclose(fileid) < 0)
|
|
ERR;
|
|
}
|
|
SUMMARIZE_ERR;
|
|
FINAL_RESULTS;
|
|
}
|