netcdf-c/h5_test
Dennis Heimbigner 751300ec59 Fix more memory leaks in netcdf-c library
This is a follow up to PR https://github.com/Unidata/netcdf-c/pull/1173

Sorry that it is so big, but leak suppression can be complex.

This PR fixes all remaining memory leaks -- as determined by
-fsanitize=address, and with the exceptions noted below.

Unfortunately. there remains a significant leak that I cannot
solve. It involves vlens, and it is unclear if the leak is
occurring in the netcdf-c library or the HDF5 library.

I have added a check_PROGRAM to the ncdump directory to show the
problem.  The program is called tst_vlen_demo.c To exercise it,
build the netcdf library with -fsanitize=address enabled. Then
go into ncdump and do a "make clean check".  This should build
tst_vlen_demo without actually executing it.  Then do the
command "./tst_vlen_demo" to see the output of the memory
checker.  Note the the lost malloc is deep in the HDF5 library
(in H5Tvlen.c).

I am temporarily working around this error in the following way.
1. I modified several test scripts to not execute known vlen tests
   that fail as described above.
2. Added an environment variable called NC_VLEN_NOTEST.
   If set, then those specific tests are suppressed.

This should mean that the --disable-utilities option to
./configure should not need to be set to get a memory leak clean
build.  This should allow for detection of any new leaks.

Note: I used an environment variable rather than a ./configure
option to control the vlen tests. This is because it is
temporary (I hope) and because it is a bit tricky for shell
scripts to access ./configure options.

Finally, as before, this only been tested with netcdf-4 and hdf5 support.
2018-11-15 10:00:38 -07:00
..
CMakeLists.txt removed mention of deleted tst_h_rd_cmp.c from h5_test CMake build 2017-11-26 09:01:54 -07:00
h5_err_macros.h Primary change: add dap4 support 2017-03-08 17:01:10 -07:00
Makefile.am removed valgrind stuff 2018-02-27 08:36:12 -07:00
ref_tst_compounds.nc
ref_tst_h_compounds2.h5
ref_tst_h_compounds.h5
run_par_tests.sh Testing something with the pure h5 tests. 2017-06-28 16:51:29 -06:00
tst_h_atts3.c Misc. source comment typos 2018-04-26 23:04:01 -04:00
tst_h_atts4.c Misc. source comment typos 2018-04-26 23:04:01 -04:00
tst_h_atts.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_compounds2.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_compounds.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_dimscales1.c final cleanup 2017-11-08 04:29:53 -07:00
tst_h_dimscales2.c Many changes to address NCF-177 (renaming dimensions and variables). Also 2013-11-30 23:20:28 -06:00
tst_h_dimscales3.c Many changes to address NCF-177 (renaming dimensions and variables). Also 2013-11-30 23:20:28 -06:00
tst_h_dimscales4.c Many changes to address NCF-177 (renaming dimensions and variables). Also 2013-11-30 23:20:28 -06:00
tst_h_dimscales.c Misc. source comment typos 2018-04-26 23:04:01 -04:00
tst_h_endian_float.c Tweaked tests for additional debugging. 2015-05-15 13:11:46 -06:00
tst_h_enums.c Made memory free method conditional, based on if H5free_memory is available in libhdf5 or not. In support of code contributed by Greg Sjaardema . See https://github.com/Unidata/netcdf-c/pull/411 for more information. 2017-06-06 11:33:05 -06:00
tst_h_files2.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_files4.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_files.c Fix more memory leaks in netcdf-c library 2018-11-15 10:00:38 -07:00
tst_h_grps.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_ints.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_mem.c Refactoring tests to separate out error macros from tests, in support of fixing http://github.com/Unidata/netcdf-c/issues/321 2016-10-21 17:17:39 +00:00
tst_h_opaques.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_par.c Add missing #include "err_macros.h" to tst_h_par.c 2016-11-29 11:48:01 -07:00
tst_h_strings1.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_strings2.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_strings.c - Deleted --has-szlib option for nc-config, since that is controlled 2012-10-31 21:31:07 +00:00
tst_h_vars2.c Misc. source comment typos 2018-04-26 23:04:01 -04:00
tst_h_vars3.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_vars.c Misc. source comment typos 2018-04-26 23:04:01 -04:00
tst_h_vl.c completely rewritten constraint system 2011-11-14 04:20:19 +00:00
tst_h_wrt_cmp.c more changes to attempt to get cmake working 2017-11-23 06:21:08 -07:00