mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-11-27 07:30:33 +08:00
f6e25b695e
re: https://github.com/Unidata/netcdf-c/issues/2117 re: https://github.com/Unidata/netcdf-c/issues/2119 * Modify libsrc to allow byte-range reading of netcdf-3 files in private S3 buckets; this required using the aws sdk. Also add a test case. * The aws sdk can sometimes cause problems if the Awd::ShutdownAPI function is not called. So at optional atexit() support to ensure it is called. This is disabled for Windows. * Add documentation to nczarr.md on how to build and use the aws sdk under windows. Currently it builds, but testing fails. * Switch testing from stratus to the Unidata bucket on S3. * Improve support for the s3: url protocol. * Add a s3 specific utility code file: ds3util.c * Modify NC_infermodel to attempt to read the magic number of byte-ranged files in S3. ## Misc. * Move and rename the core S3 SDK wrapper code (libnczarr/zs3sdk.cpp) to libdispatch since it now used in libsrc as well as libnczarr. * Add calls to nc_finalize in the utilities in case atexit is disabled. * Add header only json parser to the distribution rather than as a built source.
275 lines
6.7 KiB
C
Executable File
275 lines
6.7 KiB
C
Executable File
/*
|
|
x * Copyright 2018, University Corporation for Atmospheric Research
|
|
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
|
|
*/
|
|
|
|
#include "ut_includes.h"
|
|
#include "ncpathmgr.h"
|
|
#include "nclog.h"
|
|
|
|
#ifdef HAVE_GETOPT_H
|
|
#include <getopt.h>
|
|
#endif
|
|
|
|
#if defined(_WIN32) && !defined(__MINGW32__)
|
|
#include "XGetopt.h"
|
|
#endif
|
|
|
|
struct ZUTEST zutester;
|
|
|
|
struct UTOptions utoptions;
|
|
|
|
/*Forward*/
|
|
static void canonicalfile(char** fp);
|
|
|
|
void
|
|
usage(int err)
|
|
{
|
|
if(err) {
|
|
fprintf(stderr,"error: (%d) %s\n",err,nc_strerror(err));
|
|
}
|
|
fprintf(stderr,"usage:");
|
|
fprintf(stderr," -D/*debug*/");
|
|
fprintf(stderr," -x<cmd,cmd,...>");
|
|
fprintf(stderr," -f<inputfilename>");
|
|
fprintf(stderr," -o<outputfilename>");
|
|
fprintf(stderr," -k<kind>");
|
|
fprintf(stderr," -d<dim>=<len>");
|
|
fprintf(stderr," -v<type>var(<dim/chunksize,dim/chunksize...>)");
|
|
fprintf(stderr," -s<slices>");
|
|
fprintf(stderr," -W<int>,<int>...");
|
|
fprintf(stderr,"\n");
|
|
fflush(stderr);
|
|
exit(1);
|
|
}
|
|
|
|
int
|
|
ut_init(int argc, char** argv, struct UTOptions * options)
|
|
{
|
|
int stat = NC_NOERR;
|
|
int c;
|
|
Dimdef* dimdef = NULL;
|
|
Vardef* vardef = NULL;
|
|
|
|
nc_initialize();
|
|
|
|
if(options != NULL) {
|
|
options->dimdefs = nclistnew();
|
|
options->vardefs = nclistnew();
|
|
while ((c = getopt(argc, argv, "T:Dx:f:o:p:k:d:v:s:W:")) != EOF) {
|
|
switch(c) {
|
|
case 'T':
|
|
nctracelevel(atoi(optarg));
|
|
break;
|
|
case 'D':
|
|
options->debug = 1;
|
|
break;
|
|
case 'x': /*execute*/
|
|
if(parsestringvector(optarg,0,&options->cmds) <= 0) usage(THROW(0));
|
|
break;
|
|
case 'f':
|
|
options->file = strdup(optarg);
|
|
break;
|
|
case 'o':
|
|
options->output = strdup(optarg);
|
|
break;
|
|
case 'p':
|
|
options->profile = strdup(optarg);
|
|
break;
|
|
case 'k': /*implementation*/
|
|
options->kind = strdup(optarg);
|
|
break;
|
|
case 'd': /*dimdef*/
|
|
if((stat=parsedimdef(optarg,&dimdef))) usage(THROW(stat));
|
|
nclistpush(options->dimdefs,dimdef);
|
|
dimdef = NULL;
|
|
break;
|
|
case 'v': /*vardef*/
|
|
if((stat=parsevardef(optarg,options->dimdefs,&vardef))) usage(THROW(stat));
|
|
nclistpush(options->vardefs,vardef);
|
|
vardef = NULL;
|
|
break;
|
|
case 's': /*slices*/
|
|
if((stat=parseslices(optarg,&options->nslices,options->slices))) usage(THROW(stat));
|
|
break;
|
|
case 'W': /*walk data*/
|
|
options->idatalen = parseintvector(optarg,4,(void**)&options->idata);
|
|
break;
|
|
case '?':
|
|
fprintf(stderr,"unknown option: '%c'\n",c);
|
|
stat = NC_EINVAL;
|
|
goto done;
|
|
}
|
|
}
|
|
}
|
|
|
|
canonicalfile(&options->file);
|
|
canonicalfile(&options->output);
|
|
|
|
done:
|
|
return THROW(stat);
|
|
}
|
|
|
|
void
|
|
ut_final(void)
|
|
{
|
|
nc_finalize();
|
|
}
|
|
|
|
#if 0
|
|
static void
|
|
getpathcwd(char** cwdp)
|
|
{
|
|
char buf[4096];
|
|
(void)NCgetcwd(buf,sizeof(buf));
|
|
if(cwdp) *cwdp = strdup(buf);
|
|
}
|
|
#endif
|
|
|
|
static void
|
|
canonicalfile(char** fp)
|
|
{
|
|
size_t len;
|
|
char* f = NULL;
|
|
char* abspath = NULL;
|
|
NCURI* uri = NULL;
|
|
#ifdef _WIN32
|
|
int fwin32=0, cwd32=0;
|
|
#endif
|
|
|
|
if(fp == NULL || *fp == NULL) return;
|
|
f = *fp;
|
|
len = strlen(f);
|
|
if(len <= 1) return;
|
|
ncuriparse(f,&uri);
|
|
if(uri != NULL) {ncurifree(uri); return;} /* its a url */
|
|
|
|
#if 1
|
|
abspath = NCpathabsolute(f);
|
|
#else
|
|
if(f[0] == '/' || f[0] == '\\' || hasdriveletter(f))
|
|
return; /* its already absolute */
|
|
#ifdef _WIN32
|
|
for(p=f;*p;p++) {if(*p == '\\') {*p = '/';}}
|
|
#endif
|
|
if(len >= 2 && memcmp(f,"./",2)==0) {
|
|
offset = 1; /* leave the '/' */
|
|
} else if(len >= 3 && memcmp(f,"../",3)==0) {
|
|
offset = 2;
|
|
} else
|
|
offset = 0;
|
|
getpathcwd(&cwd);
|
|
len2 = strlen(cwd);
|
|
#ifdef _WIN32
|
|
for(cwd32=0,p=cwd;*p;p++) {if(*p == '\\') {*p = '/'; cwd32 = 1;}}
|
|
#endif
|
|
if(offset == 2) {
|
|
p = strrchr(cwd,'/');
|
|
/* remove last segment including the preceding '/' */
|
|
if(p == NULL) {cwd[0] = '\0';} else {*p = '\0';}
|
|
}
|
|
len2 = (len-offset)+strlen(cwd);
|
|
if(offset == 0) len2++; /* need to add '/' */
|
|
abspath = (char*)malloc(len2+1);
|
|
abspath[0] = '\0';
|
|
strlcat(abspath,cwd,len2+1);
|
|
if(offset == 0) strlcat(abspath,"/",len2+1);
|
|
strlcat(abspath,f+offset,len2+1);
|
|
#ifdef _WIN32
|
|
if(fwin32)
|
|
for(p=abspath;*p;p++) {if(*p == '/') {*p = '\\';}}
|
|
#endif
|
|
nullfree(cwd);
|
|
#endif
|
|
nullfree(f);
|
|
fprintf(stderr,"canonicalfile: %s\n",abspath);
|
|
*fp = abspath;
|
|
}
|
|
|
|
void
|
|
nccheck(int stat, int line)
|
|
{
|
|
if(stat) {
|
|
fprintf(stderr,"%d: %s\n",line,nc_strerror(stat));
|
|
fflush(stderr);
|
|
exit(1);
|
|
}
|
|
}
|
|
|
|
char*
|
|
makeurl(const char* file, NCZM_IMPL impl, struct UTOptions* options)
|
|
{
|
|
char* url = NULL;
|
|
NCbytes* buf = ncbytesnew();
|
|
NCURI* uri = NULL;
|
|
const char* kind = impl2kind(impl);
|
|
char* urlpath = NULL;
|
|
char* p;
|
|
|
|
if(file && strlen(file) > 0) {
|
|
switch (impl) {
|
|
case NCZM_FILE:
|
|
case NCZM_ZIP:
|
|
/* Massage file to make it usable as URL path */
|
|
urlpath = strdup(file);
|
|
for(p=urlpath;*p;p++) {if(*p == '\\') *p = '/';}
|
|
ncbytescat(buf,"file://");
|
|
ncbytescat(buf,urlpath);
|
|
nullfree(urlpath); urlpath = NULL;
|
|
ncbytescat(buf,"#mode=nczarr"); /* => use default file: format */
|
|
ncbytescat(buf,",");
|
|
ncbytescat(buf,kind);
|
|
break;
|
|
case NCZM_S3:
|
|
/* Assume that we have a complete url */
|
|
if(ncuriparse(file,&uri)) return NULL;
|
|
if(options->profile) {
|
|
const char* profile = ncurifragmentlookup(uri,"aws.profile");
|
|
if(profile == NULL) {
|
|
ncurisetfragmentkey(uri,"aws.profile",options->profile);
|
|
/* rebuild the url */
|
|
file = (const char*)ncuribuild(uri,NULL,NULL,NCURIALL); /* BAD but simple */
|
|
}
|
|
}
|
|
ncbytescat(buf,file);
|
|
break;
|
|
default: abort();
|
|
}
|
|
url = ncbytesextract(buf);
|
|
}
|
|
ncurifree(uri);
|
|
ncbytesfree(buf);
|
|
fprintf(stderr,"url=|%s|\n",url);
|
|
fflush(stderr);
|
|
return url;
|
|
}
|
|
|
|
struct Test*
|
|
findtest(const char* cmd, struct Test* tests)
|
|
{
|
|
struct Test* t = NULL;
|
|
for(t=tests;t->cmd;t++) {
|
|
if(strcasecmp(t->cmd,cmd)==0) return t;
|
|
}
|
|
return NULL;
|
|
}
|
|
|
|
int
|
|
runtests(const char** cmds, struct Test* tests)
|
|
{
|
|
int stat = NC_NOERR;
|
|
struct Test* test = NULL;
|
|
const char** cmd = NULL;
|
|
if(cmds == NULL) return THROW(NC_EINVAL);
|
|
for(cmd=cmds;*cmd;cmd++) {
|
|
for(test=tests;test->cmd;test++) {
|
|
if(strcmp(test->cmd,*cmd)==0) {
|
|
if(test->cmd == NULL) return THROW(NC_EINVAL);
|
|
if((stat=test->test())) goto done; /* Execute */
|
|
}
|
|
}
|
|
}
|
|
done:
|
|
return THROW(stat);
|
|
}
|