netcdf-c/libsrcp/ncpdispatch.c
Dennis Heimbigner 3ffe7be446 Enhance/Fix filter support
re: Discussion https://github.com/Unidata/netcdf-c/discussions/2214

The primary change is to support so-called "standard filters".
A standard filter is one that is defined by the following
netcdf-c API:
````
int nc_def_var_XXX(int ncid, int varid, size_t nparams, unsigned* params);
int nc_inq_var_XXXX(int ncid, int varid, int* usefilterp, unsigned* params);
````
So for example, zstandard would be a standard filter by defining
the functions *nc_def_var_zstandard* and *nc_inq_var_zstandard*.

In order to define these functions, we need a new dispatch function:
````
int nc_inq_filter_avail(int ncid, unsigned filterid);
````
This function, combined with the existing filter API can be used
to implement arbitrary standard filters using a simple code pattern.
Note that I would have preferred that this function return a list
of all available filters, but HDF5 does not support that functionality.

So this PR implements the dispatch function and implements
the following standard functions:
    + bzip2
    + zstandard
    + blosc
Specific test cases are also provided for HDF5 and NCZarr.
Over time, other specific standard filters will be defined.

## Primary Changes
* Add nc_inq_filter_avail() to netcdf-c API.
* Add standard filter implementations to test use of *nc_inq_filter_avail*.
* Bump the dispatch table version number and add to all the relevant
   dispatch tables (libsrc, libsrcp, etc).
* Create a program to invoke nc_inq_filter_avail so that it is accessible
  to shell scripts.
* Cleanup szip support to properly support szip
  when HDF5 is disabled. This involves detecting
  libsz separately from testing if HDF5 supports szip.
* Integrate shuffle and fletcher32 into the existing
  filter API. This means that, for example, nc_def_var_fletcher32
  is now a wrapper around nc_def_var_filter.
* Extend the Codec defaulting to allow multiple default shared libraries.

## Misc. Changes
* Modify configure.ac/CMakeLists.txt to look for the relevant
  libraries implementing standard filters.
* Modify libnetcdf.settings to list available standard filters
  (including deflate and szip).
* Add CMake test modules to locate libbz2 and libzstd.
* Cleanup the HDF5 memory manager function use in the plugins.
* remove unused file include//ncfilter.h
* remove tests for the HDF5 memory operations e.g. H5allocate_memory.
* Add flag to ncdump to force use of _Filter instead of _Deflate
  or _Shuffle or _Fletcher32. Used for testing.
2022-03-14 12:39:37 -06:00

1487 lines
48 KiB
C

/*********************************************************************
* Copyright 2018, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
*********************************************************************/
/* WARNING: Order of mpi.h, nc.h, and pnetcdf.h is important */
#include "config.h"
#include <stdlib.h>
#include <mpi.h>
#include "nc.h"
#include "ncdispatch.h"
#include "fbits.h"
/* Must follow netcdf.h */
#include <pnetcdf.h>
#define NCP_MODE_DATA 0x0001
#define NCP_MODE_INDEP 0x0002
typedef struct NCP_INFO
{
/* pnetcdf_access_mode keeps track of whether independent or collective
* mode is set currently and whether the file is in define or data mode.
*/
int pnetcdf_access_mode;
} NCP_INFO;
/* Define accessors for the dispatchdata */
#define NCP_DATA(nc) ((NCP_INFO*)(nc)->dispatchdata)
#define NCP_DATA_SET(nc,data) ((nc)->dispatchdata = (void*)(data))
/* NC_MPIIO and NC_MPIPOSIX are deprecated and hence ignored */
static const int LEGAL_CREATE_FLAGS = (NC_WRITE | NC_NOCLOBBER | NC_64BIT_OFFSET | NC_CLASSIC_MODEL | NC_SHARE | NC_LOCK | NC_64BIT_DATA | NC_MPIIO | NC_MPIPOSIX);
static const int LEGAL_OPEN_FLAGS = (NC_WRITE | NC_NOCLOBBER | NC_SHARE | NC_LOCK | NC_CLASSIC_MODEL | NC_64BIT_OFFSET | NC_64BIT_DATA | NC_MPIIO | NC_MPIPOSIX);
/**************************************************/
static int
NCP_create(const char *path,
int cmode,
size_t initialsz,
int basepe,
size_t *chunksizehintp,
void *mpidata,
const struct NC_Dispatch *table,
int ncid)
{
int status;
NCP_INFO *nc5;
NC *nc;
/* Find pointer to NC for this file. */
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
/* Check the cmode for only valid flags */
if (cmode & ~LEGAL_CREATE_FLAGS) return NC_EINVAL;
/* No MPI environment initialized */
if (mpidata == NULL) return NC_ENOPAR;
/* Create NCP_INFO instance */
nc5 = (NCP_INFO*)calloc(1,sizeof(NCP_INFO));
if (nc5 == NULL) return NC_ENOMEM;
/* Link nc5 and nc */
NCP_DATA_SET(nc,nc5);
status = ncmpi_create(((NC_MPI_INFO *)mpidata)->comm, path, cmode,
((NC_MPI_INFO *)mpidata)->info, &nc->int_ncid);
if (status == NC_NOERR)
/* Default to independent access, like netCDF-4/HDF5 files. */
fSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP);
else
free(nc5); /* reclaim allocated space */
return status;
}
static int
NCP_open(const char *path,
int omode,
int basepe,
size_t *chunksizehintp,
void *mpidata,
const struct NC_Dispatch *table,
int ncid)
{
int status;
NCP_INFO *nc5;
NC *nc;
/* Find pointer to NC for this file. */
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
/* Check the omode for only valid flags */
if (omode & ~LEGAL_OPEN_FLAGS) return NC_EINVAL;
/* No MPI environment initialized */
if (mpidata == NULL) return NC_ENOPAR;
/* Create NCP_INFO instance */
nc5 = (NCP_INFO*)calloc(1,sizeof(NCP_INFO));
if (nc5 == NULL) return NC_ENOMEM;
/* file open automatically enters data mode */
fSet(nc5->pnetcdf_access_mode, NCP_MODE_DATA);
/* Link nc5 and nc */
NCP_DATA_SET(nc,nc5);
status = ncmpi_open(((NC_MPI_INFO *)mpidata)->comm, path, omode,
((NC_MPI_INFO *)mpidata)->info, &(nc->int_ncid));
if (status == NC_NOERR) {
/* Default to independent access, like netCDF-4/HDF5 files. */
status = ncmpi_begin_indep_data(nc->int_ncid);
fSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP);
}
else
free(nc5); /* reclaim allocated space */
return status;
}
static int
NCP_redef(int ncid)
{
NC *nc;
NCP_INFO *nc5;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
nc5 = NCP_DATA(nc);
/* the file now enters define mode */
fClr(nc5->pnetcdf_access_mode, NCP_MODE_DATA);
return ncmpi_redef(nc->int_ncid);
}
static int
NCP__enddef(int ncid,
size_t h_minfree,
size_t v_align,
size_t v_minfree,
size_t r_align)
{
int status;
NC *nc;
NCP_INFO *nc5;
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
nc5 = NCP_DATA(nc);
assert(nc5);
#if (PNETCDF_VERSION_MAJOR*10000 + PNETCDF_VERSION_MINOR*100 + PNETCDF_VERSION_SUB >= 10500)
/* ncmpi__enddef() was first implemented in PnetCDF v1.5.0 */
status = ncmpi__enddef(nc->int_ncid,
(MPI_Offset)h_minfree,
(MPI_Offset)v_align,
(MPI_Offset)v_minfree,
(MPI_Offset)r_align);
#else
status = ncmpi_enddef(nc->int_ncid);
#endif
if (!status) {
/* the file now enters data mode */
fSet(nc5->pnetcdf_access_mode, NCP_MODE_DATA);
/* default is independent data mode */
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP))
status = ncmpi_begin_indep_data(nc->int_ncid);
}
return status;
}
static int
NCP_sync(int ncid)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_sync(nc->int_ncid);
}
static int
NCP_abort(int ncid)
{
NC *nc;
NCP_INFO *nc5;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
status = ncmpi_abort(nc->int_ncid);
nc5 = NCP_DATA(nc);
if (nc5 != NULL) free(nc5); /* reclaim allocated space */
return status;
}
static int
NCP_close(int ncid, void *ignored)
{
NC *nc;
NCP_INFO *nc5;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
status = ncmpi_close(nc->int_ncid);
nc5 = NCP_DATA(nc);
if (nc5 != NULL) free(nc5); /* reclaim allocated space */
return status;
}
static int
NCP_set_fill(int ncid, int fillmode, int *old_mode_ptr)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
#if (PNETCDF_VERSION_MAJOR*10000 + PNETCDF_VERSION_MINOR*100 + PNETCDF_VERSION_SUB >= 10601)
/* ncmpi_set_fill was first implemented in PnetCDF 1.6.1 */
return ncmpi_set_fill(nc->int_ncid, fillmode, old_mode_ptr);
#else
return NC_EPNETCDF;
#endif
}
static int
NCP_inq_format(int ncid, int *formatp)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_inq_format(nc->int_ncid, formatp);
}
static int
NCP_inq_format_extended(int ncid, int *formatp, int *modep)
{
/* Note PnetCDF understands classic, 64bit-offset, and CDF-5 formats */
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
if (modep) *modep = nc->mode;
if (formatp) *formatp = NC_FORMATX_PNETCDF;
return NC_NOERR;
}
static int
NCP_inq(int ncid,
int *ndimsp,
int *nvarsp,
int *nattsp,
int *unlimp)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_inq(nc->int_ncid, ndimsp, nvarsp, nattsp, unlimp);
}
static int
NCP_inq_type(int ncid, nc_type typeid, char *name, size_t *size)
{
/* for non-netcdf4 files, no user defined type is allowed */
if (typeid < NC_BYTE || typeid >= NC_STRING)
return NC_EBADTYPE;
if (name)
strcpy(name, NC_atomictypename(typeid));
if (size)
*size = NC_atomictypelen(typeid);
return NC_NOERR;
}
static int
NCP_def_dim(int ncid, const char *name, size_t len, int *idp)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_def_dim(nc->int_ncid, name, len, idp);
}
static int
NCP_inq_dimid(int ncid, const char *name, int *idp)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_inq_dimid(nc->int_ncid, name, idp);
}
static int
NCP_inq_dim(int ncid, int dimid, char *name, size_t *lenp)
{
int status;
NC *nc;
MPI_Offset mpilen;
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
status = ncmpi_inq_dim(nc->int_ncid, dimid, name, &mpilen);
if (status == NC_NOERR && lenp) *lenp = mpilen;
return status;
}
static int
NCP_inq_unlimdim(int ncid, int *unlimdimidp)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_inq_unlimdim(nc->int_ncid, unlimdimidp);
}
static int
NCP_rename_dim(int ncid, int dimid, const char *newname)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_rename_dim(nc->int_ncid, dimid, newname);
}
static int
NCP_inq_att(int ncid,
int varid,
const char *name,
nc_type *xtypep,
size_t *lenp)
{
NC *nc;
MPI_Offset mpilen;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
status = ncmpi_inq_att(nc->int_ncid, varid, name, xtypep, &mpilen);
if (status == NC_NOERR && lenp) *lenp = mpilen;
return status;
}
static int
NCP_inq_attid(int ncid, int varid, const char *name, int *idp)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_inq_attid(nc->int_ncid,varid, name, idp);
}
static int
NCP_inq_attname(int ncid, int varid, int attnum, char *name)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_inq_attname(nc->int_ncid, varid, attnum, name);
}
static int
NCP_rename_att(int ncid, int varid, const char *name,
const char *newname)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_rename_att(nc->int_ncid, varid, name, newname);
}
static int
NCP_del_att(int ncid, int varid, const char *name)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_del_att(nc->int_ncid, varid, name);
}
static int
NCP_get_att(int ncid,
int varid,
const char *name,
void *op,
nc_type memtype)
{
NC *nc;
int status;
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
if (memtype == NC_NAT) {
status = ncmpi_inq_att(nc->int_ncid, varid, name, &memtype, NULL);
if (status != NC_NOERR) return status;
}
switch (memtype) {
case NC_CHAR:
return ncmpi_get_att_text(nc->int_ncid, varid, name, (char*)op);
case NC_BYTE:
return ncmpi_get_att_schar(nc->int_ncid, varid, name, (signed char*)op);
case NC_SHORT:
return ncmpi_get_att_short(nc->int_ncid, varid, name, (short*)op);
case NC_INT:
return ncmpi_get_att_int(nc->int_ncid, varid, name, (int*)op);
case NC_FLOAT:
return ncmpi_get_att_float(nc->int_ncid, varid, name, (float*)op);
case NC_DOUBLE:
return ncmpi_get_att_double(nc->int_ncid, varid, name, (double*)op);
case NC_UBYTE:
return ncmpi_get_att_uchar(nc->int_ncid, varid, name, (unsigned char*)op);
case NC_USHORT:
return ncmpi_get_att_ushort(nc->int_ncid, varid, name, (unsigned short*)op);
case NC_UINT:
return ncmpi_get_att_uint(nc->int_ncid, varid, name, (unsigned int*)op);
case NC_INT64:
return ncmpi_get_att_longlong(nc->int_ncid, varid, name, (long long*)op);
case NC_UINT64:
return ncmpi_get_att_ulonglong(nc->int_ncid, varid, name, (unsigned long long*)op);
default:
return NC_EBADTYPE;
}
}
static int
NCP_put_att(int ncid,
int varid,
const char *name,
nc_type xtype,
size_t len,
const void *ip,
nc_type memtype)
{
NC *nc;
int status;
MPI_Offset mpilen;
/* check if ncid is valid */
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
/* check if varid is valid */
status = ncmpi_inq_varnatts(nc->int_ncid, varid, NULL);
if (status != NC_NOERR) return status;
if (!name || (strlen(name) > NC_MAX_NAME))
return NC_EBADNAME;
/* The length needs to be positive (cast needed for braindead
systems with signed size_t). */
if (((unsigned long) len) > X_INT_MAX)
return NC_EINVAL;
mpilen = len;
switch (memtype) {
case NC_CHAR:
return ncmpi_put_att_text(nc->int_ncid, varid, name, mpilen, (char*)ip);
case NC_BYTE:
return ncmpi_put_att_schar(nc->int_ncid, varid, name, xtype, mpilen, (signed char*)ip);
case NC_SHORT:
return ncmpi_put_att_short(nc->int_ncid, varid, name, xtype, mpilen, (short*)ip);
case NC_INT:
return ncmpi_put_att_int(nc->int_ncid, varid, name, xtype, mpilen, (int*)ip);
case NC_FLOAT:
return ncmpi_put_att_float(nc->int_ncid, varid, name, xtype, mpilen, (float*)ip);
case NC_DOUBLE:
return ncmpi_put_att_double(nc->int_ncid, varid, name, xtype, mpilen, (double*)ip);
case NC_UBYTE:
return ncmpi_put_att_uchar(nc->int_ncid, varid, name, xtype, mpilen, (unsigned char*)ip);
case NC_USHORT:
return ncmpi_put_att_ushort(nc->int_ncid, varid, name, xtype, mpilen, (unsigned short*)ip);
case NC_UINT:
return ncmpi_put_att_uint(nc->int_ncid, varid, name, xtype, mpilen, (unsigned int*)ip);
case NC_INT64:
return ncmpi_put_att_longlong(nc->int_ncid, varid, name, xtype, mpilen, (long long*)ip);
case NC_UINT64:
return ncmpi_put_att_ulonglong(nc->int_ncid, varid, name, xtype, mpilen, (unsigned long long*)ip);
default:
return NC_EBADTYPE;
}
}
static int
NCP_def_var(int ncid, const char *name, nc_type xtype,
int ndims, const int *dimidsp, int *varidp)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_def_var(nc->int_ncid,name,xtype,ndims,dimidsp,varidp);
}
static int
NCP_inq_varid(int ncid, const char *name, int *varidp)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_inq_varid(nc->int_ncid,name,varidp);
}
static int
NCP_rename_var(int ncid, int varid, const char *name)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
return ncmpi_rename_var(nc->int_ncid,varid,name);
}
static int
NCP_get_vara(int ncid,
int varid,
const size_t *startp,
const size_t *countp,
void *op,
nc_type memtype)
{
NC *nc;
NCP_INFO *nc5;
int d, ndims, status;
MPI_Offset mpi_start[NC_MAX_VAR_DIMS], mpi_count[NC_MAX_VAR_DIMS];
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
nc5 = NCP_DATA(nc);
assert(nc5);
/* get variable's ndims */
status = ncmpi_inq_varndims(nc->int_ncid, varid, &ndims);
if (status != NC_NOERR) return status;
/* We must convert the start and count arrays to MPI_Offset type. */
for (d=0; d<ndims; d++) {
mpi_start[d] = startp[d];
mpi_count[d] = countp[d];
}
if (memtype == NC_NAT) {
status = ncmpi_inq_vartype(nc->int_ncid, varid, &memtype);
if (status != NC_NOERR) return status;
}
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP)) {
switch(memtype) {
case NC_BYTE:
return ncmpi_get_vara_schar(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_CHAR:
return ncmpi_get_vara_text(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_SHORT:
return ncmpi_get_vara_short(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_INT:
return ncmpi_get_vara_int(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_FLOAT:
return ncmpi_get_vara_float(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_DOUBLE:
return ncmpi_get_vara_double(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_UBYTE:
return ncmpi_get_vara_uchar(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_USHORT:
return ncmpi_get_vara_ushort(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_UINT:
return ncmpi_get_vara_uint(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_INT64:
return ncmpi_get_vara_longlong(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_UINT64:
return ncmpi_get_vara_ulonglong(nc->int_ncid, varid, mpi_start, mpi_count, op);
default:
return NC_EBADTYPE;
}
} else {
switch(memtype) {
case NC_BYTE:
return ncmpi_get_vara_schar_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_CHAR:
return ncmpi_get_vara_text_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_SHORT:
return ncmpi_get_vara_short_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_INT:
return ncmpi_get_vara_int_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_FLOAT:
return ncmpi_get_vara_float_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_DOUBLE:
return ncmpi_get_vara_double_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_UBYTE:
return ncmpi_get_vara_uchar_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_USHORT:
return ncmpi_get_vara_ushort_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_UINT:
return ncmpi_get_vara_uint_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_INT64:
return ncmpi_get_vara_longlong_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
case NC_UINT64:
return ncmpi_get_vara_ulonglong_all(nc->int_ncid, varid, mpi_start, mpi_count, op);
default:
return NC_EBADTYPE;
}
}
}
static int
NCP_put_vara(int ncid,
int varid,
const size_t *startp,
const size_t *countp,
const void *ip,
nc_type memtype)
{
NC *nc;
NCP_INFO *nc5;
int d, ndims, status;
MPI_Offset mpi_start[NC_MAX_VAR_DIMS], mpi_count[NC_MAX_VAR_DIMS];
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
nc5 = NCP_DATA(nc);
assert(nc5);
/* get variable's ndims */
status = ncmpi_inq_varndims(nc->int_ncid, varid, &ndims);
if (status != NC_NOERR) return status;
/* We must convert the start and count arrays to MPI_Offset type. */
for (d=0; d<ndims; d++) {
mpi_start[d] = startp[d];
mpi_count[d] = countp[d];
}
if (memtype == NC_NAT) {
status = ncmpi_inq_vartype(nc->int_ncid, varid, &memtype);
if (status != NC_NOERR) return status;
}
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP)) {
switch(memtype) {
case NC_BYTE:
return ncmpi_put_vara_schar(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_CHAR:
return ncmpi_put_vara_text(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_SHORT:
return ncmpi_put_vara_short(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_INT:
return ncmpi_put_vara_int(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_FLOAT:
return ncmpi_put_vara_float(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_DOUBLE:
return ncmpi_put_vara_double(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_UBYTE:
return ncmpi_put_vara_uchar(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_USHORT:
return ncmpi_put_vara_ushort(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_UINT:
return ncmpi_put_vara_uint(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_INT64:
return ncmpi_put_vara_longlong(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_UINT64:
return ncmpi_put_vara_ulonglong(nc->int_ncid, varid, mpi_start, mpi_count, ip);
default:
return NC_EBADTYPE;
}
} else {
switch(memtype) {
case NC_BYTE:
return ncmpi_put_vara_schar_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_CHAR:
return ncmpi_put_vara_text_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_SHORT:
return ncmpi_put_vara_short_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_INT:
return ncmpi_put_vara_int_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_FLOAT:
return ncmpi_put_vara_float_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_DOUBLE:
return ncmpi_put_vara_double_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_UBYTE:
return ncmpi_put_vara_uchar_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_USHORT:
return ncmpi_put_vara_ushort_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_UINT:
return ncmpi_put_vara_uint_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_INT64:
return ncmpi_put_vara_longlong_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
case NC_UINT64:
return ncmpi_put_vara_ulonglong_all(nc->int_ncid, varid, mpi_start, mpi_count, ip);
default:
return NC_EBADTYPE;
}
}
}
static int
NCP_get_vars(int ncid,
int varid,
const size_t *startp,
const size_t *countp,
const ptrdiff_t *stridep,
void *op,
nc_type memtype)
{
NC *nc;
NCP_INFO *nc5;
int d, ndims, status;
MPI_Offset mpi_start[NC_MAX_VAR_DIMS], mpi_count[NC_MAX_VAR_DIMS], mpi_stride[NC_MAX_VAR_DIMS];
if (stridep == NULL)
return NCP_get_vara(ncid, varid, startp, countp, op, memtype);
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
nc5 = NCP_DATA(nc);
assert(nc5);
/* get variable's ndims */
status = ncmpi_inq_varndims(nc->int_ncid, varid, &ndims);
if (status != NC_NOERR) return status;
/* We must convert the start, count, and stride arrays to MPI_Offset type. */
for (d=0; d<ndims; d++) {
mpi_start[d] = startp[d];
mpi_count[d] = countp[d];
mpi_stride[d] = stridep[d];
}
if (memtype == NC_NAT) {
status = ncmpi_inq_vartype(nc->int_ncid, varid, &memtype);
if (status != NC_NOERR) return status;
}
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP)) {
switch(memtype) {
case NC_BYTE:
return ncmpi_get_vars_schar(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_CHAR:
return ncmpi_get_vars_text(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_SHORT:
return ncmpi_get_vars_short(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_INT:
return ncmpi_get_vars_int(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_FLOAT:
return ncmpi_get_vars_float(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_DOUBLE:
return ncmpi_get_vars_double(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UBYTE:
return ncmpi_get_vars_uchar(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_USHORT:
return ncmpi_get_vars_ushort(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UINT:
return ncmpi_get_vars_uint(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_INT64:
return ncmpi_get_vars_longlong(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UINT64:
return ncmpi_get_vars_ulonglong(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
default:
return NC_EBADTYPE;
}
} else {
switch(memtype) {
case NC_BYTE:
return ncmpi_get_vars_schar_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_CHAR:
return ncmpi_get_vars_text_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_SHORT:
return ncmpi_get_vars_short_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_INT:
return ncmpi_get_vars_int_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_FLOAT:
return ncmpi_get_vars_float_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_DOUBLE:
return ncmpi_get_vars_double_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UBYTE:
return ncmpi_get_vars_uchar_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_USHORT:
return ncmpi_get_vars_ushort_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UINT:
return ncmpi_get_vars_uint_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_INT64:
return ncmpi_get_vars_longlong_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UINT64:
return ncmpi_get_vars_ulonglong_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
default:
return NC_EBADTYPE;
}
}
}
static int
NCP_put_vars(int ncid,
int varid,
const size_t *startp,
const size_t *countp,
const ptrdiff_t *stridep,
const void *op,
nc_type memtype)
{
NC *nc;
NCP_INFO *nc5;
int d, ndims, status;
MPI_Offset mpi_start[NC_MAX_VAR_DIMS], mpi_count[NC_MAX_VAR_DIMS], mpi_stride[NC_MAX_VAR_DIMS];
if (stridep == NULL)
return NCP_put_vara(ncid, varid, startp, countp, op, memtype);
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
nc5 = NCP_DATA(nc);
assert(nc5);
/* get variable's ndims */
status = ncmpi_inq_varndims(nc->int_ncid, varid, &ndims);
if (status != NC_NOERR) return status;
/* We must convert the start, count, and stride arrays to MPI_Offset type. */
for (d=0; d<ndims; d++) {
mpi_start[d] = startp[d];
mpi_count[d] = countp[d];
mpi_stride[d] = stridep[d];
}
if (memtype == NC_NAT) {
status = ncmpi_inq_vartype(nc->int_ncid, varid, &memtype);
if (status != NC_NOERR) return status;
}
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP)) {
switch(memtype) {
case NC_BYTE:
return ncmpi_put_vars_schar(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_CHAR:
return ncmpi_put_vars_text(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_SHORT:
return ncmpi_put_vars_short(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_INT:
return ncmpi_put_vars_int(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_FLOAT:
return ncmpi_put_vars_float(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_DOUBLE:
return ncmpi_put_vars_double(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UBYTE:
return ncmpi_put_vars_uchar(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_USHORT:
return ncmpi_put_vars_ushort(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UINT:
return ncmpi_put_vars_uint(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_INT64:
return ncmpi_put_vars_longlong(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UINT64:
return ncmpi_put_vars_ulonglong(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
default:
return NC_EBADTYPE;
}
} else {
switch(memtype) {
case NC_BYTE:
return ncmpi_put_vars_schar_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_CHAR:
return ncmpi_put_vars_text_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_SHORT:
return ncmpi_put_vars_short_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_INT:
return ncmpi_put_vars_int_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_FLOAT:
return ncmpi_put_vars_float_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_DOUBLE:
return ncmpi_put_vars_double_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UBYTE:
return ncmpi_put_vars_uchar_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_USHORT:
return ncmpi_put_vars_ushort_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UINT:
return ncmpi_put_vars_uint_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_INT64:
return ncmpi_put_vars_longlong_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
case NC_UINT64:
return ncmpi_put_vars_ulonglong_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, op);
default:
return NC_EBADTYPE;
}
}
}
static int
NCP_get_varm(int ncid,
int varid,
const size_t *startp,
const size_t *countp,
const ptrdiff_t *stridep,
const ptrdiff_t *imapp,
void *ip,
nc_type memtype)
{
NC *nc;
NCP_INFO *nc5;
int d, ndims, status;
MPI_Offset mpi_start[NC_MAX_VAR_DIMS], mpi_count[NC_MAX_VAR_DIMS], mpi_stride[NC_MAX_VAR_DIMS], mpi_imap[NC_MAX_VAR_DIMS];
if (imapp == NULL) {
if (stridep == NULL)
return NCP_get_vara(ncid, varid, startp, countp, ip, memtype);
else
return NCP_get_vars(ncid, varid, startp, countp, stridep, ip, memtype);
}
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
nc5 = NCP_DATA(nc);
assert(nc5);
/* get variable's ndims */
status = ncmpi_inq_varndims(nc->int_ncid, varid, &ndims);
if (status != NC_NOERR) return status;
/* We must convert the start, count, stride, and imap arrays to MPI_Offset type. */
for (d=0; d<ndims; d++) {
mpi_start[d] = startp[d];
mpi_count[d] = countp[d];
mpi_stride[d] = (stridep == NULL) ? 1 : stridep[d];
mpi_imap[d] = imapp[d];
}
if (memtype == NC_NAT) {
status = ncmpi_inq_vartype(nc->int_ncid, varid, &memtype);
if (status != NC_NOERR) return status;
}
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP)) {
switch(memtype) {
case NC_BYTE:
return ncmpi_get_varm_schar(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_CHAR:
return ncmpi_get_varm_text(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_SHORT:
return ncmpi_get_varm_short(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_INT:
return ncmpi_get_varm_int(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_FLOAT:
return ncmpi_get_varm_float(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_DOUBLE:
return ncmpi_get_varm_double(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_UBYTE:
return ncmpi_get_varm_uchar(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_USHORT:
return ncmpi_get_varm_ushort(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_UINT:
return ncmpi_get_varm_uint(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_INT64:
return ncmpi_get_varm_longlong(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_UINT64:
return ncmpi_get_varm_ulonglong(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
default:
return NC_EBADTYPE;
}
} else {
switch(memtype) {
case NC_BYTE:
return ncmpi_get_varm_schar_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_CHAR:
return ncmpi_get_varm_text_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_SHORT:
return ncmpi_get_varm_short_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_INT:
return ncmpi_get_varm_int_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_FLOAT:
return ncmpi_get_varm_float_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_DOUBLE:
return ncmpi_get_varm_double_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_UBYTE:
return ncmpi_get_varm_uchar_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_USHORT:
return ncmpi_get_varm_ushort_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_UINT:
return ncmpi_get_varm_uint_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_INT64:
return ncmpi_get_varm_longlong_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
case NC_UINT64:
return ncmpi_get_varm_ulonglong_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, ip);
default:
return NC_EBADTYPE;
}
}
}
static int
NCP_put_varm(int ncid,
int varid,
const size_t *startp,
const size_t *countp,
const ptrdiff_t *stridep,
const ptrdiff_t *imapp,
const void *op,
nc_type memtype)
{
NC *nc;
NCP_INFO *nc5;
int d, ndims, status;
MPI_Offset mpi_start[NC_MAX_VAR_DIMS], mpi_count[NC_MAX_VAR_DIMS], mpi_stride[NC_MAX_VAR_DIMS], mpi_imap[NC_MAX_VAR_DIMS];
if (imapp == NULL) {
if (stridep == NULL)
return NCP_put_vara(ncid, varid, startp, countp, op, memtype);
else
return NCP_put_vars(ncid, varid, startp, countp, stridep, op, memtype);
}
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
nc5 = NCP_DATA(nc);
assert(nc5);
/* get variable's ndims */
status = ncmpi_inq_varndims(nc->int_ncid, varid, &ndims);
if (status != NC_NOERR) return status;
/* We must convert the start, count, stride, and imap arrays to MPI_Offset type. */
for (d=0; d<ndims; d++) {
mpi_start[d] = startp[d];
mpi_count[d] = countp[d];
mpi_stride[d] = (stridep == NULL) ? 1 : stridep[d];
mpi_imap[d] = imapp[d];
}
if (memtype == NC_NAT) {
status = ncmpi_inq_vartype(nc->int_ncid, varid, &memtype);
if (status != NC_NOERR) return status;
}
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP)) {
switch(memtype) {
case NC_BYTE:
return ncmpi_put_varm_schar(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_CHAR:
return ncmpi_put_varm_text(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_SHORT:
return ncmpi_put_varm_short(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_INT:
return ncmpi_put_varm_int(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_FLOAT:
return ncmpi_put_varm_float(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_DOUBLE:
return ncmpi_put_varm_double(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_UBYTE:
return ncmpi_put_varm_uchar(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_USHORT:
return ncmpi_put_varm_ushort(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_UINT:
return ncmpi_put_varm_uint(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_INT64:
return ncmpi_put_varm_longlong(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_UINT64:
return ncmpi_put_varm_ulonglong(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
default:
return NC_EBADTYPE;
}
} else {
switch(memtype) {
case NC_BYTE:
return ncmpi_put_varm_schar_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_CHAR:
return ncmpi_put_varm_text_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_SHORT:
return ncmpi_put_varm_short_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_INT:
return ncmpi_put_varm_int_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_FLOAT:
return ncmpi_put_varm_float_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_DOUBLE:
return ncmpi_put_varm_double_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_UBYTE:
return ncmpi_put_varm_uchar_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_USHORT:
return ncmpi_put_varm_ushort_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_UINT:
return ncmpi_put_varm_uint_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_INT64:
return ncmpi_put_varm_longlong_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
case NC_UINT64:
return ncmpi_put_varm_ulonglong_all(nc->int_ncid, varid, mpi_start, mpi_count, mpi_stride, mpi_imap, op);
default:
return NC_EBADTYPE;
}
}
}
static int
NCP_inq_var_all(int ncid, int varid, char *name, nc_type *xtypep,
int *ndimsp, int *dimidsp, int *nattsp,
int *shufflep, int *deflatep, int *deflate_levelp,
int *fletcher32p, int *contiguousp, size_t *chunksizesp,
int *no_fill, void *fill_valuep, int *endiannessp,
unsigned int *idp, size_t *nparamsp, unsigned int *params)
{
int status;
NC *nc;
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
status = ncmpi_inq_var(nc->int_ncid, varid, name, xtypep, ndimsp, dimidsp, nattsp);
if (status != NC_NOERR) return status;
if (shufflep) *shufflep = 0;
if (deflatep) *deflatep = 0;
if (fletcher32p) *fletcher32p = 0;
if (contiguousp) *contiguousp = NC_CONTIGUOUS;
#if (PNETCDF_VERSION_MAJOR*10000 + PNETCDF_VERSION_MINOR*100 + PNETCDF_VERSION_SUB >= 10601)
/* ncmpi_inq_var_fill was first implemented in PnetCDF 1.6.1 */
if (no_fill) {
status = ncmpi_inq_var_fill(nc->int_ncid, varid, no_fill, fill_valuep);
if (status != NC_NOERR) return status;
}
#else
/* PnetCDF 1.6.0 and priors support NC_NOFILL only */
if (no_fill) *no_fill = 1;
#endif
if (endiannessp) return NC_ENOTNC4;
if (idp) return NC_ENOTNC4;
if (nparamsp) return NC_ENOTNC4;
if (params) return NC_ENOTNC4;
return NC_NOERR;
}
static int
NCP_def_var_fill(int ncid, int varid, int no_fill, const void *fill_value)
{
NC *nc;
int status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
#if (PNETCDF_VERSION_MAJOR*10000 + PNETCDF_VERSION_MINOR*100 + PNETCDF_VERSION_SUB >= 10601)
/* ncmpi_def_var_fill was first implemented in PnetCDF 1.6.1 */
return ncmpi_def_var_fill(nc->int_ncid, varid, no_fill, fill_value);
#else
return NC_EPNETCDF;
#endif
}
static int
NCP_var_par_access(int ncid, int varid, int par_access)
{
NC *nc;
NCP_INFO *nc5;
int status;
if (par_access != NC_INDEPENDENT && par_access != NC_COLLECTIVE)
return NC_EINVAL;
#ifdef _DO_NOT_IGNORE_VARID_
if (varid != NC_GLOBAL) /* PnetCDF cannot do per-variable mode change */
return NC_EINVAL;
#endif
status = NC_check_id(ncid, &nc);
if (status != NC_NOERR) return status;
nc5 = NCP_DATA(nc);
assert(nc5);
/* if currently in data mode */
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_DATA)) {
if (par_access == NC_INDEPENDENT) {
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP))
return NC_NOERR;
else { /* currently in collective data mode */
fSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP);
return ncmpi_begin_indep_data(nc->int_ncid);
}
}
else { /* want to enter collective data mode */
if (fIsSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP)) {
fClr(nc5->pnetcdf_access_mode, NCP_MODE_INDEP);
return ncmpi_end_indep_data(nc->int_ncid);
}
else
return NC_NOERR;
}
}
else { /* currently in define mode */
if (par_access == NC_INDEPENDENT)
fSet(nc5->pnetcdf_access_mode, NCP_MODE_INDEP);
else
fClr(nc5->pnetcdf_access_mode, NCP_MODE_INDEP);
}
return NC_NOERR;
}
static int
NCP_show_metadata(int ncid)
{
return NC_NOERR;
}
static int
NCP_inq_unlimdims(int ncid, int *ndimsp, int *unlimdimidsp)
{
int retval;
int unlimid;
if ((retval = NCP_inq_unlimdim(ncid, &unlimid)))
return retval;
if (unlimid != -1) {
if (ndimsp) *ndimsp = 1;
if (unlimdimidsp)
unlimdimidsp[0] = unlimid;
} else
if (ndimsp) *ndimsp = 0;
return NC_NOERR;
}
static int
NCP_inq_type_equal(int ncid1,
nc_type typeid1,
int ncid2,
nc_type typeid2,
int *equalp)
{
/* Check input. */
if (equalp == NULL) return NC_NOERR;
if (typeid1 <= NC_NAT || typeid2 <= NC_NAT)
return NC_EINVAL;
*equalp = 0; /* assume */
/* If one is atomic, and the other user-defined, the types are not equal */
if ((typeid1 <= NC_STRING && typeid2 > NC_STRING) ||
(typeid2 <= NC_STRING && typeid1 > NC_STRING)) {
if (equalp) *equalp = 0;
return NC_NOERR;
}
/* If both are atomic types, the answer is easy. */
if (typeid1 <= ATOMICTYPEMAX5) {
if (equalp) {
if (typeid1 == typeid2)
*equalp = 1;
else
*equalp = 0;
}
return NC_NOERR;
}
return NC_NOERR;
}
static int
NCP_def_grp(int parent_ncid, const char *name, int *new_ncid)
{
return NC_ENOTNC4;
}
static int
NCP_rename_grp(int ncid, const char *name)
{
return NC_ENOTNC4;
}
static int
NCP_inq_ncid(int ncid, const char *name, int *grp_ncid)
{
if (grp_ncid) *grp_ncid = ncid;
return NC_NOERR;
}
static int
NCP_inq_grps(int ncid, int *numgrps, int *ncids)
{
if (numgrps)
*numgrps = 0;
return NC_NOERR;
}
static int
NCP_inq_grpname(int ncid, char *name)
{
if (name)
strcpy(name, "/");
return NC_NOERR;
}
static int
NCP_inq_grpname_full(int ncid, size_t *lenp, char *full_name)
{
if (full_name)
strcpy(full_name, "/");
if (lenp) *lenp = 1;
return NC_NOERR;
}
static int
NCP_inq_grp_parent(int ncid, int *parent_ncid)
{
return NC_ENOGRP;
}
static int
NCP_inq_grp_full_ncid(int ncid, const char *full_name, int *grp_ncid)
{
return NC_ENOGRP;
}
static int
NCP_inq_varids(int ncid, int *nvarsp, int *varids)
{
int retval,v,nvars;
/* This is, effectively, a netcdf-3 file, there is only one group, the root
group, and its vars have ids 0 thru nvars - 1. */
if ((retval = NCP_inq(ncid, NULL, &nvars, NULL, NULL)))
return retval;
if (nvarsp) *nvarsp = nvars;
if (varids) {
for (v=0; v<nvars; v++)
varids[v] = v;
}
return NC_NOERR;
}
static int
NCP_inq_dimids(int ncid, int *ndimsp, int *dimids, int include_parents)
{
int retval,d,ndims;
/* If this is like a netcdf-3 file, then the dimids are going to be 0
thru ndims-1, so just provide them. */
if ((retval = NCP_inq(ncid, &ndims, NULL, NULL, NULL)))
return retval;
if (ndimsp) *ndimsp = ndims;
if (dimids) {
for (d=0; d<ndims; d++)
dimids[d] = d;
}
return NC_NOERR;
}
static int
NCP_inq_typeid(int ncid, const char *name, nc_type *typeidp)
{
int i;
for (i=0; i<=ATOMICTYPEMAX5; i++)
if (!strcmp(name, NC_atomictypename(i))) {
if (typeidp) *typeidp = i;
return NC_NOERR;
}
return NC_ENOTNC4;
}
static int
NCP_inq_typeids(int ncid, int *ntypes, int *typeids)
{
if (ntypes) *ntypes = 0;
return NC_NOERR;
}
static int
NCP_inq_user_type(int ncid, nc_type typeid, char *name, size_t *size,
nc_type *base_nc_typep, size_t *nfieldsp, int *classp)
{
return NC_ENOTNC4;
}
/**************************************************/
/* Pnetcdf Dispatch table */
static const NC_Dispatch NCP_dispatcher = {
NC_FORMATX_PNETCDF,
NC_DISPATCH_VERSION,
NCP_create,
NCP_open,
NCP_redef,
NCP__enddef,
NCP_sync,
NCP_abort,
NCP_close,
NCP_set_fill,
NCP_inq_format,
NCP_inq_format_extended,
NCP_inq,
NCP_inq_type,
NCP_def_dim,
NCP_inq_dimid,
NCP_inq_dim,
NCP_inq_unlimdim,
NCP_rename_dim,
NCP_inq_att,
NCP_inq_attid,
NCP_inq_attname,
NCP_rename_att,
NCP_del_att,
NCP_get_att,
NCP_put_att,
NCP_def_var,
NCP_inq_varid,
NCP_rename_var,
NCP_get_vara,
NCP_put_vara,
NCP_get_vars,
NCP_put_vars,
NCP_get_varm,
NCP_put_varm,
NCP_inq_var_all,
NCP_var_par_access,
NCP_def_var_fill,
NCP_show_metadata,
NCP_inq_unlimdims,
NCP_inq_ncid,
NCP_inq_grps,
NCP_inq_grpname,
NCP_inq_grpname_full,
NCP_inq_grp_parent,
NCP_inq_grp_full_ncid,
NCP_inq_varids,
NCP_inq_dimids,
NCP_inq_typeids,
NCP_inq_type_equal,
NCP_def_grp,
NCP_rename_grp,
NCP_inq_user_type,
NCP_inq_typeid,
NC_NOTNC4_def_compound,
NC_NOTNC4_insert_compound,
NC_NOTNC4_insert_array_compound,
NC_NOTNC4_inq_compound_field,
NC_NOTNC4_inq_compound_fieldindex,
NC_NOTNC4_def_vlen,
NC_NOTNC4_put_vlen_element,
NC_NOTNC4_get_vlen_element,
NC_NOTNC4_def_enum,
NC_NOTNC4_insert_enum,
NC_NOTNC4_inq_enum_member,
NC_NOTNC4_inq_enum_ident,
NC_NOTNC4_def_opaque,
NC_NOTNC4_def_var_deflate,
NC_NOTNC4_def_var_fletcher32,
NC_NOTNC4_def_var_chunking,
NC_NOTNC4_def_var_endian,
NC_NOTNC4_def_var_filter,
NC_NOTNC4_set_var_chunk_cache,
NC_NOTNC4_get_var_chunk_cache,
NC_NOOP_inq_var_filter_ids,
NC_NOOP_inq_var_filter_info,
NC_NOTNC4_def_var_quantize,
NC_NOTNC4_inq_var_quantize,
NC_NOOP_inq_filter_avail,
};
const NC_Dispatch *NCP_dispatch_table = NULL; /* moved here from ddispatch.c */
int
NCP_initialize(void)
{
NCP_dispatch_table = &NCP_dispatcher;
return NC_NOERR;
}
int
NCP_finalize(void)
{
return NC_NOERR;
}