netcdf-c/ncdump
Dennis Heimbigner 55a2643cac Fix a number of OS specific bugs
1. Issue https://github.com/Unidata/netcdf-c/issues/2043
   * FreeBSD build fails because of conflicts in defining the fileno() function. So removed all extern declarations of fileno.

2. Issue https://github.com/Unidata/netcdf-c/issues/2124
   * There were a couple of problems here.
     * I was conflating msys with mingw and they need separate handling of paths. So treat mingw like windows.
     * memio.c was not always writing the full content of the memory to file. Untested fix by properly accounting for zero size writes.
     * Fix bug when skipping white space in tst_xcache.c

3. Issue https://github.com/Unidata/netcdf-c/pull/2105
   * On MINGW, bash and other POSIX utilities use a mounted root directory,
     but executables compiled for Windows do not recognise the mount point.
     Ensure that Windows paths are used in tests of Windows executables.

4. Issue https://github.com/Unidata/netcdf-c/issues/2132
   * Apparently the Intel C compiler on OSX defines isnan etc.
     So disable declaration in dutil.c under that condition.

5. Fix and re-enable test_rcmerge.sh by allowing override of where to
   look for .rc files

6. CMakeLists.txt suppresses certain ncdump directory tests because of differences in printing floats/doubles.
   * Extend the list to include those that also fail under mingw.
   * Suppress the mingw tests in ncdump/Makefile.am
2021-11-03 12:49:54 -06:00
..
cdl Fix handling of enum constants nested in compound types. 2021-09-12 18:03:57 -06:00
expected Fix handling of enum constants nested in compound types. 2021-09-12 18:03:57 -06:00
bom.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
cdl.h ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
chunkspec.c Make utilities support NC_COMPACT 2020-02-29 12:06:21 -07:00
chunkspec.h Make utilities support NC_COMPACT 2020-02-29 12:06:21 -07:00
CMakeLists.txt Fix a number of OS specific bugs 2021-11-03 12:49:54 -06:00
depend
dimmap.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
dimmap.h ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
dumplib.c Merge branch 'master' into ncdumpvlenbug.dmh 2021-05-27 14:50:05 -06:00
dumplib.h ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
env
indent.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
indent.h ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
inttags4.cdl
inttags.cdl
L512.bin
list.c Extend nccopy -F option syntax. 2019-02-08 18:48:17 -07:00
list.h Extend nccopy -F option syntax. 2019-02-08 18:48:17 -07:00
Makefile.am Fix a number of OS specific bugs 2021-11-03 12:49:54 -06:00
nc4print.c Codify cross-platform file paths 2021-03-04 13:41:31 -07:00
nc4printer.c Use the built-in HDF5 byte-range reader, if available. 2020-09-24 14:33:58 -06:00
nccomps.h ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
nccopy.1 More fixes to the nccopy filter x chunking algorithm 2021-01-31 15:10:39 -07:00
nccopy.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ncdump.1 Make utilities support NC_COMPACT 2020-02-29 12:06:21 -07:00
ncdump.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ncdump.h ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
nciter.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
nciter.h ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
ncpathcvt.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
nctime0.c Treat time units as case-insensitive in ncdump 2020-05-14 06:48:03 -06:00
nctime0.h ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
nctrunc.c Remove netcdf-4 conditional on the dispatch table. 2019-07-20 13:59:40 -06:00
ncvalidator.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ocprint.c Fix Mingw versus XGetopt (again) 2021-05-26 14:27:27 -06:00
printfqn.c Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
ref1.ncml
ref_ctest1_nc4.cdl
ref_ctest1_nc4c.cdl
ref_ctest64.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
ref_ctest_small_3.c Add test cases 2019-11-03 12:03:13 -07:00
ref_ctest_small_4.c Add test cases 2019-11-03 12:03:13 -07:00
ref_ctest_special_atts_4.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
ref_ctest.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
ref_inttags4.cdl
ref_inttags.cdl
ref_keyword1.cdl Allow use of type keywords as identifier in formats that do not support that type. 2020-06-05 17:03:29 -06:00
ref_keyword2.cdl Allow use of type keywords as identifier in formats that do not support that type. 2020-06-05 17:03:29 -06:00
ref_keyword3.cdl Fix the handling of certain alias types on CDL files. 2021-04-13 16:56:43 -06:00
ref_keyword4.cdl Fix the handling of certain alias types on CDL files. 2021-04-13 16:56:43 -06:00
ref_nc_test_netcdf4_4_0.nc
ref_nc_test_netcdf4.cdl
ref_nccopy3_subset.nc
ref_nccopy_w.cdl Fix nccopy to use NC_PERSIST so that -w actually persists the output. 2019-03-15 12:05:27 -06:00
ref_no_ncproperty.nc Simplify libhdf5/nc5info.c to move to lazy parsing 2019-03-09 20:35:57 -07:00
ref_null_byte_padding_test.nc
ref_pathcvt.txt Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_provenance_v1.nc There was a request to extend the provenance information 2018-08-25 21:44:41 -06:00
ref_rcmerge1.txt Fix a number of OS specific bugs 2021-11-03 12:49:54 -06:00
ref_rcmerge2.txt Fix a number of OS specific bugs 2021-11-03 12:49:54 -06:00
ref_rcmerge3.txt Fix a number of OS specific bugs 2021-11-03 12:49:54 -06:00
ref_roman_szip_simple.cdl added some ncdump tests for szip when it is present 2020-07-02 13:59:37 -06:00
ref_roman_szip_unlim.cdl added some ncdump tests for szip when it is present 2020-07-02 13:59:37 -06:00
ref_test_360_day_1900.cdl
ref_test_360_day_1900.nc
ref_test_365_day_1900.cdl
ref_test_365_day_1900.nc
ref_test_366_day_1900.cdl
ref_test_366_day_1900.nc
ref_test_corrupt_magic.nc
ref_times.cdl Test ncdump time unit name case-insensitivity 2020-05-14 06:42:12 -06:00
ref_tst_charfill.cdl
ref_tst_comp2.cdl
ref_tst_comp.cdl
ref_tst_compounds2.cdl
ref_tst_compounds2.nc
ref_tst_compounds3.cdl
ref_tst_compounds3.nc
ref_tst_compounds4.cdl
ref_tst_compounds4.nc
ref_tst_enum_data.cdl
ref_tst_fillbug.cdl
ref_tst_format_att_64.cdl
ref_tst_format_att.cdl
ref_tst_group_data_v23.cdl
ref_tst_group_data.cdl
ref_tst_grp_spec0.cdl
ref_tst_grp_spec.cdl
ref_tst_irish_rover.nc tests for ncdump issue with irish rover 2018-05-15 08:09:52 -06:00
ref_tst_mud4_chars.cdl
ref_tst_mud4-bc.cdl
ref_tst_mud4.cdl
ref_tst_nans.cdl
ref_tst_nc4_utf8_4.cdl
ref_tst_ncf213.cdl reverted changes superblock values 2021-01-11 14:43:44 -06:00
ref_tst_nofilters.cdl More fixes to the nccopy filter x chunking algorithm 2021-01-31 15:10:39 -07:00
ref_tst_noncoord.cdl
ref_tst_opaque_data.cdl
ref_tst_perdimspecs.cdl Fix nccopy -c dim/x to actually use the dim/x value. 2020-09-01 13:44:24 -06:00
ref_tst_radix.cdl Fix ncgen handling of octal constants (with leading 0). 2019-02-25 20:57:23 -07:00
ref_tst_small.cdl
ref_tst_solar_1.cdl
ref_tst_solar_2.cdl
ref_tst_special_atts3.cdl
ref_tst_special_atts.cdl reverted changes superblock values 2021-01-11 14:43:44 -06:00
ref_tst_string_data.cdl
ref_tst_unicode.cdl
ref_tst_utf8_4.cdl
ref_tst_utf8.cdl
ref_tst_vlen_data2.cdl
ref_tst_vlen_data.cdl
rewrite-scalar.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
run_back_comp_tests.sh
run_ncgen_nc4_tests.sh Fix more memory leaks in netcdf-c library 2018-11-15 10:00:38 -07:00
run_ncgen_tests.sh replace USE_CDF5 with ENABLE_CDF5 2018-06-29 21:17:07 -05:00
run_tests.sh clean up 2019-03-12 09:54:16 -06:00
run_utf8_nc4_tests.sh
run_utf8_tests.sh
scope_ancestor_only.cdl Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
scope_ancestor_subgroup.cdl Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
scope_group_only.cdl Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
scope_preorder.cdl Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
small2.cdl
small.cdl
test0.cdl
test_corrupt_magic.cdl
test_keywords.sh Fix the handling of certain alias types on CDL files. 2021-04-13 16:56:43 -06:00
test_radix.sh Fix ncgen handling of octal constants (with leading 0). 2019-02-25 20:57:23 -07:00
test_rcmerge.sh Fix a number of OS specific bugs 2021-11-03 12:49:54 -06:00
test_scope.sh Regularize the scoping of dimensions 2021-05-31 15:51:12 -06:00
test_unicode_directory.sh Codify cross-platform file paths 2021-03-04 13:41:31 -07:00
test_unicode_path.sh Codify cross-platform file paths 2021-03-04 13:41:31 -07:00
testpathcvt.sh Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
tst_64bit.sh replace USE_CDF5 with ENABLE_CDF5 2018-06-29 21:17:07 -05:00
tst_bom.sh
tst_brecs.cdl
tst_bug321.cdl
tst_calendars.cdl Test ncdump time unit name case-insensitivity 2020-05-14 06:42:12 -06:00
tst_calendars.sh
tst_charfill.cdl
tst_charfill.sh
tst_chunking.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_comp2.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_comp.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_compress.c Add a comment 2021-08-16 10:06:45 -06:00
tst_create_files.c added some ncdump tests for szip when it is present 2020-07-02 13:59:37 -06:00
tst_ctests.sh Add test cases 2019-11-03 12:03:13 -07:00
tst_dimsizes.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_dimsizes.sh
tst_enum_data.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_fileinfo.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_fileinfo.sh Fix undefined references when using Visual Studio 2020-05-18 19:36:28 -06:00
tst_fillbug.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_fillbug.sh
tst_formatx3.sh replace USE_CDF5 with ENABLE_CDF5 2018-06-29 21:17:07 -05:00
tst_formatx4.sh
tst_group_data.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_grp_spec.sh
tst_h_rdc0.c Remove need for HDF5-1.6 API being defined 2021-04-28 13:59:24 -06:00
tst_h_scalar.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_h_scalar.sh
tst_hdf5_offset.sh Fix undefined references when using Visual Studio 2020-05-18 19:36:28 -06:00
tst_inmemory_nc3.sh
tst_inmemory_nc4.sh
tst_inttags4.sh
tst_inttags.sh
tst_iter.sh
tst_lengths.sh replace USE_CDF5 with ENABLE_CDF5 2018-06-29 21:17:07 -05:00
tst_mslp.cdl
tst_mud.sh
tst_nans.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_nccopy3_subset.sh Swapped /bin/bash for /bin/sh to test on osx. 2018-08-12 23:01:08 -06:00
tst_nccopy3.sh This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
tst_nccopy4.sh Upgrade the nczarr code to match Zarr V2 2021-04-24 19:48:15 -06:00
tst_nccopy5.sh Make utilities support NC_COMPACT 2020-02-29 12:06:21 -07:00
tst_nccopy_w3.sh Fix nccopy to use NC_PERSIST so that -w actually persists the output. 2019-03-15 12:05:27 -06:00
tst_nccopy_w4.sh Fix nccopy to use NC_PERSIST so that -w actually persists the output. 2019-03-15 12:05:27 -06:00
tst_ncgen4_classic.sh The ncdap_tests were a mess, so I decided to clean them up 2018-03-20 21:31:31 -06:00
tst_ncgen4_cycle.sh Fix handling of enum constants nested in compound types. 2021-09-12 18:03:57 -06:00
tst_ncgen4_diff.sh
tst_ncgen4.sh Swapped /bin/bash for /bin/sh to test on osx. 2018-08-12 23:01:08 -06:00
tst_ncgen_shared.sh Fix handling of enum constants nested in compound types. 2021-09-12 18:03:57 -06:00
tst_ncml.cdl
tst_netcdf4_4.sh Merge branch '951' of https://github.com/brtnfld/netcdf-c into 4.8.0-wellspring-prs.wif 2021-03-22 11:51:54 -06:00
tst_netcdf4.sh Merge branch '951' of https://github.com/brtnfld/netcdf-c into 4.8.0-wellspring-prs.wif 2021-03-22 11:51:54 -06:00
tst_null_byte_padding.sh
tst_opaque_data.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_output.sh Fix undefined references when using Visual Studio 2020-05-18 19:36:28 -06:00
tst_radix.cdl Fix ncgen handling of octal constants (with leading 0). 2019-02-25 20:57:23 -07:00
tst_rcmerge.c Significantly Improve Amazon S3 Cloud Storage Support 2021-09-27 18:36:33 -06:00
tst_special_atts.c Make utilities support NC_COMPACT 2020-02-29 12:06:21 -07:00
tst_string_data.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_unicode.c Codify cross-platform file paths 2021-03-04 13:41:31 -07:00
tst_utf8.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_vlen_data.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
tst_vlen_demo.c ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00
utils.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
utils.h Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
vardata.c Correcting a formatting error for scalars when dumping with ncdump -f 2020-04-28 15:49:03 -06:00
vardata.h ncdump, other directories updated with copyright stanza. 2018-12-06 15:36:53 -07:00