mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-11-21 03:13:42 +08:00
eb3d9eb0c9
Primary changes: * Add an improved cache system to speed up performance. * Fix NCZarr to properly handle scalar variables. Misc. Related Changes: * Added unit tests for extendible hash and for the generic cache. * Add config parameter to set size of the NCZarr cache. * Add initial performance tests but leave them unused. * Add CRC64 support. * Move location of ncdumpchunks utility from /ncgen to /ncdump. * Refactor auth support. Misc. Unrelated Changes: * More cleanup of the S3 support * Add support for S3 authentication in .rc files: HTTP.S3.ACCESSID and HTTP.S3.SECRETKEY. * Remove the hashkey from the struct OBJHDR since it is never used.
411 lines
10 KiB
C
411 lines
10 KiB
C
/*
|
|
Copyright (c) 1998-2018 University Corporation for Atmospheric Research/Unidata
|
|
See LICENSE.txt for license information.
|
|
*/
|
|
|
|
/** \file \internal
|
|
Internal netcdf-4 functions.
|
|
|
|
This file contains functions for manipulating ncindex objects.
|
|
|
|
Warning: This code depends critically on the assumption that
|
|
|void*| == |uintptr_t|
|
|
|
|
*/
|
|
|
|
/* Define this for debug so that table sizes are small */
|
|
#undef SMALLTABLE
|
|
#undef NCNOHASH
|
|
|
|
#include "config.h"
|
|
#include <stdlib.h>
|
|
#include <stdio.h>
|
|
#include <string.h>
|
|
#ifdef HAVE_STDINT_H
|
|
#include <stdint.h>
|
|
#endif
|
|
#include <assert.h>
|
|
|
|
#include "nc4internal.h"
|
|
#include "ncindex.h"
|
|
|
|
#ifdef SMALLTABLE
|
|
/* Keep the table sizes small initially */
|
|
#define DFALTTABLESIZE 7
|
|
#else
|
|
#define DFALTTABLESIZE 37
|
|
#endif
|
|
|
|
/* Hack to access internal state of a hashmap. Use with care */
|
|
/* Convert an entry from ACTIVE to DELETED;
|
|
Return 0 if not found.
|
|
*/
|
|
extern int NC_hashmapdeactivate(NC_hashmap*, uintptr_t data);
|
|
|
|
#ifndef NCNOHASH
|
|
extern void printhashmap(NC_hashmap*);
|
|
#endif
|
|
|
|
/* Locate object by name in an NCindex */
|
|
NC_OBJ*
|
|
ncindexlookup(NCindex* ncindex, const char* name)
|
|
{
|
|
NC_OBJ* obj = NULL;
|
|
if(ncindex == NULL || name == NULL)
|
|
return NULL;
|
|
{
|
|
#ifndef NCNOHASH
|
|
uintptr_t index;
|
|
assert(ncindex->map != NULL);
|
|
if(!NC_hashmapget(ncindex->map,(void*)name,strlen(name),&index))
|
|
return NULL; /* not present */
|
|
obj = (NC_OBJ*)nclistget(ncindex->list,(size_t)index);
|
|
#else
|
|
int i;
|
|
for(i=0;i<nclistlength(ncindex->list);i++) {
|
|
NC_OBJ* o = (NC_OBJ*)ncindex->list->content[i];
|
|
if(strcmp(o->name,name)==0) return o;
|
|
}
|
|
#endif
|
|
}
|
|
return obj;
|
|
}
|
|
|
|
/* Get ith object in the vector */
|
|
NC_OBJ*
|
|
ncindexith(NCindex* index, size_t i)
|
|
{
|
|
if(index == NULL) return NULL;
|
|
assert(index->list != NULL);
|
|
return nclistget(index->list,i);
|
|
}
|
|
|
|
/* See if x is contained in the index */
|
|
/* Return vector position if in index, otherwise return -1. */
|
|
int
|
|
ncindexfind(NCindex* index, NC_OBJ* nco)
|
|
{
|
|
int i;
|
|
NClist* list;
|
|
if(index == NULL || nco == NULL) return -1;
|
|
list = index->list;
|
|
for(i=0;i<nclistlength(list);i++) {
|
|
NC_OBJ* o = (NC_OBJ*)list->content[i];
|
|
if(nco == o) return i;
|
|
}
|
|
return -1;
|
|
}
|
|
|
|
/* Add object to the end of the vector, also insert into the hashmaps */
|
|
/* Return 1 if ok, 0 otherwise.*/
|
|
int
|
|
ncindexadd(NCindex* ncindex, NC_OBJ* obj)
|
|
{
|
|
if(ncindex == NULL) return 0;
|
|
#ifndef NCNOHASH
|
|
{
|
|
uintptr_t index; /*Note not the global id */
|
|
index = (uintptr_t)nclistlength(ncindex->list);
|
|
NC_hashmapadd(ncindex->map,index,(void*)obj->name,strlen(obj->name));
|
|
}
|
|
#endif
|
|
if(!nclistpush(ncindex->list,obj))
|
|
return 0;
|
|
return 1;
|
|
}
|
|
|
|
/* Insert object at ith position of the vector, also insert into the hashmaps; */
|
|
/* Return 1 if ok, 0 otherwise.*/
|
|
int
|
|
ncindexset(NCindex* ncindex, size_t i, NC_OBJ* obj)
|
|
{
|
|
if(ncindex == NULL) return 0;
|
|
if(!nclistset(ncindex->list,i,obj)) return 0;
|
|
#ifndef NCNOHASH
|
|
{
|
|
uintptr_t index = (uintptr_t)i;
|
|
NC_hashmapadd(ncindex->map,index,(void*)obj->name,strlen(obj->name));
|
|
}
|
|
#endif
|
|
return 1;
|
|
}
|
|
|
|
/**
|
|
* Remove ith object from the index;
|
|
* Return 1 if ok, 0 otherwise.*/
|
|
int
|
|
ncindexidel(NCindex* index, size_t i)
|
|
{
|
|
if(index == NULL) return 0;
|
|
nclistremove(index->list,i);
|
|
#ifndef NCNOHASH
|
|
/* Remove from the hash map by deactivating its entry */
|
|
if(!NC_hashmapdeactivate(index->map,(uintptr_t)i))
|
|
return 0; /* not present */
|
|
#endif
|
|
return 1;
|
|
}
|
|
|
|
/*Return a duplicate of the index's vector */
|
|
/* Return list if ok, NULL otherwise.*/
|
|
NC_OBJ**
|
|
ncindexdup(NCindex* index)
|
|
{
|
|
if(index == NULL || nclistlength(index->list) == 0)
|
|
return NULL;
|
|
return (NC_OBJ**)nclistclone(index->list,0/*!deep*/);
|
|
}
|
|
|
|
/* Count the non-null entries in an NCindex */
|
|
int
|
|
ncindexcount(NCindex* index)
|
|
{
|
|
int count = 0;
|
|
int i;
|
|
for(i=0;i<ncindexsize(index);i++) {
|
|
if(ncindexith(index,i) != NULL) count++;
|
|
}
|
|
return count;
|
|
}
|
|
|
|
/*
|
|
Rebuild the list map by rehashing all entries
|
|
using their current, possibly changed id and name;
|
|
also recompute their hashkey.
|
|
*/
|
|
/* Return 1 if ok, 0 otherwise.*/
|
|
int
|
|
ncindexrebuild(NCindex* index)
|
|
{
|
|
#ifndef NCNOHASH
|
|
size_t i;
|
|
size_t size = nclistlength(index->list);
|
|
NC_OBJ** contents = (NC_OBJ**)nclistextract(index->list);
|
|
/* Reset the index map and list*/
|
|
nclistfree(index->list);
|
|
index->list = nclistnew();
|
|
nclistsetalloc(index->list,size);
|
|
NC_hashmapfree(index->map);
|
|
index->map = NC_hashmapnew(size);
|
|
/* Now, reinsert all the attributes except NULLs */
|
|
for(i=0;i<size;i++) {
|
|
NC_OBJ* tmp = contents[i];
|
|
if(tmp == NULL) continue; /* ignore */
|
|
if(!ncindexadd(index,tmp))
|
|
return 0;
|
|
}
|
|
#endif
|
|
if(contents != NULL) free(contents);
|
|
return 1;
|
|
}
|
|
|
|
/* Free a list map */
|
|
int
|
|
ncindexfree(NCindex* index)
|
|
{
|
|
if(index == NULL) return 1;
|
|
nclistfree(index->list);
|
|
NC_hashmapfree(index->map);
|
|
free(index);
|
|
return 1;
|
|
}
|
|
|
|
/* Create a new index */
|
|
NCindex*
|
|
ncindexnew(size_t size0)
|
|
{
|
|
NCindex* index = NULL;
|
|
size_t size = (size0 == 0 ? DFALTTABLESIZE : size0);
|
|
index = calloc(1,sizeof(NCindex));
|
|
if(index == NULL) return NULL;
|
|
index->list = nclistnew();
|
|
if(index->list == NULL) {ncindexfree(index); return NULL;}
|
|
nclistsetalloc(index->list,size);
|
|
#ifndef NCNOHASH
|
|
index->map = NC_hashmapnew(size);
|
|
if(index->map == NULL) {ncindexfree(index); return NULL;}
|
|
#endif
|
|
return index;
|
|
}
|
|
|
|
#ifndef NCNOHASH
|
|
/* Debug: handle the data key part */
|
|
static const char*
|
|
keystr(NC_hentry* e)
|
|
{
|
|
if(e->keysize < sizeof(uintptr_t))
|
|
return (const char*)(&e->key);
|
|
else
|
|
return (const char*)(e->key);
|
|
}
|
|
#endif
|
|
|
|
int
|
|
ncindexverify(NCindex* lm, int dump)
|
|
{
|
|
size_t i;
|
|
NClist* l = lm->list;
|
|
int nerrs = 0;
|
|
#ifndef NCNOHASH
|
|
size_t m;
|
|
#endif
|
|
|
|
if(lm == NULL) {
|
|
fprintf(stderr,"index: <empty>\n");
|
|
return 1;
|
|
}
|
|
if(dump) {
|
|
fprintf(stderr,"-------------------------\n");
|
|
#ifndef NCNOHASH
|
|
if(lm->map->active == 0) {
|
|
fprintf(stderr,"hash: <empty>\n");
|
|
goto next1;
|
|
}
|
|
for(i=0;i < lm->map->alloc; i++) {
|
|
NC_hentry* e = &lm->map->table[i];
|
|
if(e->flags != 1) continue;
|
|
fprintf(stderr,"hash: %ld: data=%lu key=%s\n",(unsigned long)i,(unsigned long)e->data,keystr(e));
|
|
fflush(stderr);
|
|
}
|
|
next1:
|
|
#endif
|
|
if(nclistlength(l) == 0) {
|
|
fprintf(stderr,"list: <empty>\n");
|
|
goto next2;
|
|
}
|
|
for(i=0;i < nclistlength(l); i++) {
|
|
const char** a = (const char**)nclistget(l,i);
|
|
fprintf(stderr,"list: %ld: name=%s\n",(unsigned long)i,*a);
|
|
fflush(stderr);
|
|
}
|
|
fprintf(stderr,"-------------------------\n");
|
|
fflush(stderr);
|
|
}
|
|
|
|
next2:
|
|
#ifndef NCNOHASH
|
|
/* Need to verify that every entry in map is also in vector and vice-versa */
|
|
|
|
/* Verify that map entry points to same-named entry in vector */
|
|
for(m=0;m < lm->map->alloc; m++) {
|
|
NC_hentry* e = &lm->map->table[m];
|
|
char** object = NULL;
|
|
char* oname = NULL;
|
|
uintptr_t udata = (uintptr_t)e->data;
|
|
if((e->flags & 1) == 0) continue;
|
|
object = nclistget(l,(size_t)udata);
|
|
if(object == NULL) {
|
|
fprintf(stderr,"bad data: %d: %lu\n",(int)m,(unsigned long)udata);
|
|
nerrs++;
|
|
} else {
|
|
oname = *object;
|
|
if(strcmp(oname,keystr(e)) != 0) {
|
|
fprintf(stderr,"name mismatch: %d: %lu: hash=%s list=%s\n",
|
|
(int)m,(unsigned long)udata,keystr(e),oname);
|
|
nerrs++;
|
|
}
|
|
}
|
|
}
|
|
/* Walk vector and mark corresponding hash entry*/
|
|
if(nclistlength(l) == 0 || lm->map->active == 0)
|
|
goto done; /* cannot verify */
|
|
for(i=0;i < nclistlength(l); i++) {
|
|
int match;
|
|
const char** xp = (const char**)nclistget(l,i);
|
|
/* Walk map looking for *xp */
|
|
for(match=0,m=0;m < lm->map->active; m++) {
|
|
NC_hentry* e = &lm->map->table[m];
|
|
if((e->flags & 1) == 0) continue;
|
|
if(strcmp(keystr(e),*xp)==0) {
|
|
if((e->flags & 128) == 128) {
|
|
fprintf(stderr,"%ld: %s already in map at %ld\n",(unsigned long)i,keystr(e),(unsigned long)m);
|
|
nerrs++;
|
|
}
|
|
match = 1;
|
|
e->flags += 128;
|
|
}
|
|
}
|
|
if(!match) {
|
|
fprintf(stderr,"mismatch: %d: %s in vector, not in map\n",(int)i,*xp);
|
|
nerrs++;
|
|
}
|
|
}
|
|
/* Verify that every element in map in in vector */
|
|
for(m=0;m < lm->map->active; m++) {
|
|
NC_hentry* e = &lm->map->table[m];
|
|
if((e->flags & 1) == 0) continue;
|
|
if((e->flags & 128) == 128) continue;
|
|
/* We have a hash entry not in the vector */
|
|
fprintf(stderr,"mismatch: %d: %s->%lu in hash, not in vector\n",(int)m,keystr(e),(unsigned long)e->data);
|
|
nerrs++;
|
|
}
|
|
/* clear the 'touched' flag */
|
|
for(m=0;m < lm->map->active; m++) {
|
|
NC_hentry* e = &lm->map->table[m];
|
|
e->flags &= ~128;
|
|
}
|
|
|
|
done:
|
|
#endif /*NCNOHASH*/
|
|
fflush(stderr);
|
|
return (nerrs > 0 ? 0: 1);
|
|
}
|
|
|
|
static const char*
|
|
sortname(NC_SORT sort)
|
|
{
|
|
switch(sort) {
|
|
case NCNAT: return "NCNAT";
|
|
case NCVAR: return "NCVAR";
|
|
case NCDIM: return "NCDIM";
|
|
case NCATT: return "NCATT";
|
|
case NCTYP: return "NCTYP";
|
|
case NCGRP: return "NCGRP";
|
|
default: break;
|
|
}
|
|
return "unknown";
|
|
}
|
|
|
|
void
|
|
printindexlist(NClist* lm)
|
|
{
|
|
int i;
|
|
if(lm == NULL) {
|
|
fprintf(stderr,"<empty>\n");
|
|
return;
|
|
}
|
|
for(i=0;i<nclistlength(lm);i++) {
|
|
NC_OBJ* o = (NC_OBJ*)nclistget(lm,i);
|
|
if(o == NULL)
|
|
fprintf(stderr,"[%ld] <null>\n",(unsigned long)i);
|
|
else
|
|
fprintf(stderr,"[%ld] sort=%s name=|%s| id=%lu\n",
|
|
(unsigned long)i,sortname(o->sort),o->name,(unsigned long)o->id);
|
|
}
|
|
}
|
|
|
|
#ifndef NCNOHASH
|
|
void
|
|
printindexmap(NCindex* lm)
|
|
{
|
|
if(lm == NULL) {
|
|
fprintf(stderr,"<empty>\n");
|
|
return;
|
|
}
|
|
printhashmap(lm->map);
|
|
}
|
|
#endif
|
|
|
|
void
|
|
printindex(NCindex* lm)
|
|
{
|
|
if(lm == NULL) {
|
|
fprintf(stderr,"<empty>\n");
|
|
return;
|
|
}
|
|
printindexlist(lm->list);
|
|
#ifndef NCNOHASH
|
|
printindexmap(lm);
|
|
#endif
|
|
}
|