mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-12-15 08:30:11 +08:00
076da97aa4
As discussed in a netcdf meeting, convert NCZarr V2 to store all netcdf-4 specific info as attributes. This improves interoperability with other Zarr implementations by no longer using non-standard keys. ## Other Changes * Remove support for older NCZarr formats. * Update anonymous dimension naming * Begin the process of fixing the -Wconversion and -Wsign-compare warnings in libnczarr, nczarr_test, and v3_nczarr_test. * Update docs/nczarr.md * Rebuild using the .y and .l files
489 lines
12 KiB
C
489 lines
12 KiB
C
/*
|
|
* Copyright 2018, University Corporation for Atmospheric Research
|
|
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
|
|
*/
|
|
|
|
#include "ut_includes.h"
|
|
#include <stddef.h>
|
|
|
|
#undef DEBUG
|
|
|
|
#define META1 "/meta1"
|
|
#define META2 "/meta2"
|
|
#define DATA1 "/data1"
|
|
#define DATA1LEN 25
|
|
|
|
#define PASS 1
|
|
#define FAIL 0
|
|
#define XFAIL -1
|
|
|
|
static const char* metadata1 = "{\n\"foo\": 42,\n\"bar\": \"apples\",\n\"baz\": [1, 2, 3, 4]}";
|
|
static const char* metaarray1 = "{\n\"shape\": [1,2,3],\n\"dtype\": \"<1\"}";
|
|
|
|
static char* url = NULL;
|
|
static NCZM_IMPL impl = NCZM_UNDEF;
|
|
static char* keyprefix = NULL; /* Hold, e.g. S3 bucket name */
|
|
|
|
/* Forward */
|
|
static void title(const char*);
|
|
static int report(int pf, const char* op, NCZMAP*);
|
|
static int reportx(int pf, const char* tag, const char* op, NCZMAP*);
|
|
static char* makekey(const char* key);
|
|
|
|
static int simplecreate(void);
|
|
static int simpledelete(void);
|
|
static int simplemeta(void);
|
|
static int simpledata(void);
|
|
static int search(void);
|
|
|
|
struct Test tests[] = {
|
|
{"create",simplecreate},
|
|
{"delete",simpledelete},
|
|
{"simplemeta", simplemeta},
|
|
{"simpledata", simpledata},
|
|
{"search", search},
|
|
{NULL,NULL}
|
|
};
|
|
|
|
int
|
|
main(int argc, char** argv)
|
|
{
|
|
int stat = NC_NOERR;
|
|
char* tmp = NULL;
|
|
|
|
if((stat = ut_init(argc, argv, &utoptions))) goto done;
|
|
if(utoptions.file == NULL && utoptions.output != NULL) utoptions.file = strdup(utoptions.output);
|
|
if(utoptions.output == NULL && utoptions.file != NULL)utoptions.output = strdup(utoptions.file);
|
|
|
|
/* Canonicalize */
|
|
if((stat = NCpathcanonical(utoptions.file,&tmp))) goto done;
|
|
free(utoptions.file);
|
|
utoptions.file = tmp;
|
|
if((stat = NCpathcanonical(utoptions.output,&tmp))) goto done;
|
|
free(utoptions.output);
|
|
utoptions.output = tmp;
|
|
|
|
impl = kind2impl(utoptions.kind);
|
|
url = makeurl(utoptions.file,impl,&utoptions);
|
|
|
|
if((stat = runtests((const char**)utoptions.cmds,tests))) goto done;
|
|
|
|
done:
|
|
nullfree(tmp);
|
|
nullfree(url); url = NULL;
|
|
nullfree(keyprefix);
|
|
ut_final();
|
|
if(stat) usage(THROW(stat));
|
|
return 0;
|
|
}
|
|
|
|
/* Do a simple create */
|
|
static int
|
|
simplecreate(void)
|
|
{
|
|
int stat = NC_NOERR;
|
|
NCZMAP* map = NULL;
|
|
char* truekey = NULL;
|
|
|
|
title(__func__);
|
|
|
|
if((stat = nczmap_truncate(impl,url)))
|
|
goto done;
|
|
report(PASS,"truncate",map);
|
|
|
|
switch(stat = nczmap_create(impl,url,0,0,NULL,&map)) {
|
|
case NC_EOBJECT: break; /* already exists */
|
|
case NC_NOERR: break; /*created*/
|
|
default: goto done;
|
|
}
|
|
|
|
printf("Pass: create: create: %s\n",url);
|
|
|
|
truekey = makekey(ZMETAROOT);
|
|
if((stat = nczmap_write(map, truekey, 0, NULL)))
|
|
goto done;
|
|
printf("Pass: create: defineobj: %s\n",truekey);
|
|
|
|
/* Do not delete */
|
|
if((stat = nczmap_close(map,0)))
|
|
goto done;
|
|
map = NULL;
|
|
printf("Pass: create: close\n");
|
|
|
|
/* Reopen and see if exists */
|
|
if((stat = nczmap_open(impl,url,0,0,NULL,&map)))
|
|
goto done;
|
|
printf("Pass: create: open: %s\n",url);
|
|
|
|
if((stat = nczmap_exists(map,truekey)))
|
|
goto done;
|
|
printf("Pass: create: exists: %s\n",truekey);
|
|
|
|
/* close again */
|
|
if((stat = nczmap_close(map,0)))
|
|
goto done;
|
|
map = NULL;
|
|
printf("Pass: create: close\n");
|
|
|
|
done:
|
|
nullfree(truekey);
|
|
return THROW(stat);
|
|
}
|
|
|
|
/* Do a simple delete of previously created file */
|
|
static int
|
|
simpledelete(void)
|
|
{
|
|
int stat = NC_NOERR;
|
|
NCZMAP* map = NULL;
|
|
|
|
title(__func__);
|
|
|
|
switch ((stat = nczmap_open(impl,url,0,0,NULL,&map))) {
|
|
case NC_NOERR:
|
|
report(PASS,"open",map);
|
|
break;
|
|
default:
|
|
{report(FAIL,"open",map); goto done;}
|
|
}
|
|
/* Delete dataset while closing */
|
|
if((stat = nczmap_close(map,1))) goto done;
|
|
map = NULL;
|
|
report(PASS,"close: delete",map);
|
|
|
|
switch ((stat = nczmap_open(impl,url,0,0,NULL,&map))) {
|
|
case NC_NOERR:
|
|
report(FAIL,"open",map);
|
|
break;
|
|
case NC_ENOOBJECT:
|
|
report(XFAIL,"open",map);
|
|
stat = NC_NOERR;
|
|
break;
|
|
case NC_EEMPTY:
|
|
default: abort();
|
|
}
|
|
|
|
done:
|
|
return THROW(stat);
|
|
}
|
|
|
|
static int
|
|
simplemeta(void)
|
|
{
|
|
int stat = NC_NOERR;
|
|
NCZMAP* map = NULL;
|
|
char* key = NULL;
|
|
char* truekey = NULL;
|
|
size64_t size = 0;
|
|
char* content = NULL;
|
|
|
|
title(__func__);
|
|
|
|
if((stat = nczmap_open(impl,url,NC_WRITE,0,NULL,&map)))
|
|
goto done;
|
|
report(PASS,"open",map);
|
|
|
|
/* Make sure .nczarr exists (from simplecreate) */
|
|
truekey = makekey(ZMETAROOT);
|
|
if((stat = nczmap_exists(map,truekey)))
|
|
goto done;
|
|
report(PASS,".nczarr: exists",map);
|
|
free(truekey); truekey = NULL;
|
|
|
|
if((stat=nczm_concat(META1,ZARRAY,&key)))
|
|
goto done;
|
|
truekey = makekey(key);
|
|
nullfree(key); key = NULL;
|
|
if((stat = nczmap_write(map, truekey, 0, NULL)))
|
|
goto done;
|
|
report(PASS,".zarray: def",map);
|
|
free(truekey); truekey = NULL;
|
|
|
|
truekey = makekey(ZMETAROOT);
|
|
if((stat = nczmap_write(map, truekey, strlen(metadata1), metadata1)))
|
|
goto done;
|
|
report(PASS,".nczarr: writemetadata",map);
|
|
free(truekey); truekey = NULL;
|
|
|
|
if((stat=nczm_concat(META1,ZARRAY,&key)))
|
|
goto done;
|
|
truekey = makekey(key);
|
|
free(key); key = NULL;
|
|
|
|
if((stat = nczmap_write(map, truekey, strlen(metaarray1), metaarray1)))
|
|
goto done;
|
|
report(PASS,".zarray: writemetaarray1",map);
|
|
free(truekey); truekey = NULL;
|
|
|
|
if((stat = nczmap_close(map,0)))
|
|
goto done;
|
|
map = NULL;
|
|
report(PASS,"close",map);
|
|
|
|
if((stat = nczmap_open(impl,url,0,0,NULL,&map)))
|
|
goto done;
|
|
report(PASS,"re-open",map);
|
|
|
|
/* Read previously written */
|
|
truekey = makekey(ZMETAROOT);
|
|
if((stat = nczmap_exists(map, truekey)))
|
|
goto done;
|
|
report(PASS,".nczarr: exists",map);
|
|
if((stat = nczmap_len(map, truekey, &size)))
|
|
goto done;
|
|
report(PASS,".nczarr: len",map);
|
|
if(size != strlen(metadata1))
|
|
report(FAIL,".nczarr: len verify",map);
|
|
if((content = calloc(1,strlen(metadata1)+1))==NULL)
|
|
{stat = NC_ENOMEM; goto done;}
|
|
if((stat = nczmap_read(map, truekey, 0, strlen(metadata1), content)))
|
|
goto done;
|
|
report(PASS,".nczarr: readmetadata",map);
|
|
free(truekey); truekey = NULL;
|
|
if(memcmp(content,metadata1,size)!=0)
|
|
report(FAIL,".nczarr: content verify",map);
|
|
else report(PASS,".nczarr: content verify",map);
|
|
nullfree(content); content = NULL;
|
|
|
|
if((stat=nczm_concat(META1,ZARRAY,&key)))
|
|
goto done;
|
|
truekey = makekey(key);
|
|
nullfree(key); key = NULL;
|
|
if((stat = nczmap_exists(map, truekey)))
|
|
goto done;
|
|
report(PASS,".zarray: exists",map);
|
|
if((stat = nczmap_len(map, truekey, &size)))
|
|
goto done;
|
|
report(PASS,".zarray: len",map);
|
|
if(size != strlen(metaarray1))
|
|
report(FAIL,".zarray: len verify",map);
|
|
content = calloc(1,strlen(metaarray1)+1);
|
|
if((stat = nczmap_read(map, truekey, 0, strlen(metaarray1), content)))
|
|
goto done;
|
|
report(PASS,".zarray: readmeta",map);
|
|
free(truekey); truekey = NULL;
|
|
if(memcmp(content,metaarray1,size)!=0)
|
|
report(FAIL,".zarray: content verify",map);
|
|
else
|
|
report(PASS,".zarray:content verify",map);
|
|
nullfree(content); content = NULL;
|
|
|
|
if((stat = nczmap_close(map,0)))
|
|
goto done;
|
|
map = NULL;
|
|
report(PASS,"close",map);
|
|
|
|
done:
|
|
if(map) nczmap_close(map,0);
|
|
nullfree(content);
|
|
nullfree(truekey);
|
|
nullfree(key);
|
|
return THROW(stat);
|
|
}
|
|
|
|
static int
|
|
simpledata(void)
|
|
{
|
|
int stat = NC_NOERR;
|
|
NCZMAP* map = NULL;
|
|
char* truekey = NULL;
|
|
int data1[DATA1LEN];
|
|
int readdata[DATA1LEN];
|
|
int i;
|
|
size64_t totallen, size;
|
|
char* data1p = (char*)&data1[0]; /* byte level version of data1 */
|
|
|
|
title(__func__);
|
|
|
|
/* Create the data */
|
|
for(i=0;i<DATA1LEN;i++) data1[i] = i;
|
|
totallen = sizeof(int)*DATA1LEN;
|
|
|
|
if((stat = nczmap_open(impl,url,NC_WRITE,0,NULL,&map)))
|
|
goto done;
|
|
report(PASS,"open",map);
|
|
|
|
truekey = makekey(DATA1);
|
|
|
|
if((stat = nczmap_write(map, truekey, totallen, data1p)))
|
|
goto done;
|
|
|
|
report(PASS,DATA1": write",map);
|
|
|
|
if((stat = nczmap_close(map,0)))
|
|
goto done;
|
|
map = NULL;
|
|
report(PASS,"close",map);
|
|
|
|
if((stat = nczmap_open(impl,url,0,0,NULL,&map)))
|
|
goto done;
|
|
report(PASS,"re-open",map);
|
|
|
|
/* Read previously written */
|
|
if((stat = nczmap_exists(map, truekey)))
|
|
goto done;
|
|
report(PASS,DATA1":exists",map);
|
|
if((stat = nczmap_len(map, truekey, &size)))
|
|
goto done;
|
|
report(PASS,DATA1": len",map);
|
|
if(size != totallen)
|
|
report(FAIL,DATA1": len verify",map);
|
|
if((stat = nczmap_read(map, truekey, 0, totallen, readdata)))
|
|
goto done;
|
|
report(PASS,DATA1": read",map);
|
|
if(memcmp(data1,readdata,size)!=0)
|
|
report(FAIL,DATA1": content verify",map);
|
|
else report(PASS,DATA1": content verify",map);
|
|
free(truekey); truekey = NULL;
|
|
|
|
done:
|
|
/* Do not delete so we can look at it with ncdump */
|
|
if(map && (stat = nczmap_close(map,0)))
|
|
goto done;
|
|
nullfree(truekey);
|
|
return THROW(stat);
|
|
}
|
|
|
|
static int
|
|
searchR(NCZMAP* map, int depth, const char* prefix0, NClist* objects)
|
|
{
|
|
|
|
int stat = NC_NOERR;
|
|
NClist* matches = nclistnew();
|
|
char prefix[4096]; /* only ok because we know testdata */
|
|
size_t prefixlen;
|
|
|
|
nclistpush(objects,strdup(prefix0));
|
|
|
|
prefix[0] = '\0';
|
|
strlcat(prefix,prefix0,sizeof(prefix));
|
|
prefixlen = strlen(prefix);
|
|
|
|
/* get next level object keys **below** the prefix: should have form: <name> */
|
|
switch (stat = nczmap_search(map, prefix, matches)) {
|
|
case NC_NOERR: break;
|
|
case NC_ENOTFOUND: stat = NC_NOERR; break;/* prefix is not a dir */
|
|
default: goto done;
|
|
}
|
|
reportx(PASS,prefix,"search",map);
|
|
|
|
/* recurse */
|
|
for(size_t i=0;i<nclistlength(matches);i++) {
|
|
const char* key = nclistget(matches,i);
|
|
/* ensure trailing '/' */
|
|
if(prefix[prefixlen-1] != '/')
|
|
strlcat(prefix,"/",sizeof(prefix));
|
|
strlcat(prefix,key,sizeof(prefix));
|
|
if((stat = searchR(map,depth+1,prefix,objects))) goto done;
|
|
/* restore prefix */
|
|
prefix[prefixlen] = '\0';
|
|
if(stat != NC_NOERR)
|
|
goto done;
|
|
}
|
|
done:
|
|
nclistfreeall(matches);
|
|
return THROW(stat);
|
|
}
|
|
|
|
static int
|
|
search(void)
|
|
{
|
|
|
|
int stat = NC_NOERR;
|
|
NCZMAP* map = NULL;
|
|
NClist* objects = nclistnew();
|
|
|
|
if((stat = nczmap_open(impl,url,0,0,NULL,&map)))
|
|
goto done;
|
|
report(PASS,"open",map);
|
|
|
|
/* Do a recursive search on root to get all object keys */
|
|
if((stat=searchR(map,0,"/",objects)))
|
|
goto done;
|
|
/* Sort */
|
|
ut_sortlist(objects);
|
|
/* Print out the list */
|
|
for(size_t i=0;i<nclistlength(objects);i++) {
|
|
const char* key = nclistget(objects,i);
|
|
printf("[%zu] %s\n",i,key);
|
|
}
|
|
|
|
done:
|
|
/* Do not delete so later tests can use it */
|
|
if(map) {
|
|
(void)nczmap_close(map,0);
|
|
report(PASS,"close",map);
|
|
}
|
|
nclistfreeall(objects);
|
|
return THROW(stat);
|
|
}
|
|
|
|
#if 0
|
|
/* S3 requires knowledge of the bucket+dataset root in order to create the true key */
|
|
static void
|
|
setkeyprefix(const char* file)
|
|
{
|
|
NCURI* uri = NULL;
|
|
NClist* segments = NULL;
|
|
|
|
assert(impl == NCZM_S3);
|
|
ncuriparse(file,&uri);
|
|
/* verify that this could be an S3 url */
|
|
if(uri == NULL) return; /* oh well */
|
|
if(strcmp(uri->protocol,"file")==0) return;
|
|
|
|
segments = nclistnew();
|
|
nczm_split_delim(uri->path,'/',segments);
|
|
/* Extract the first two segments */
|
|
if(nclistlength(segments) < 1) return; /* not enough to qualify */
|
|
/* Remove the bucket */
|
|
{ char* s = nclistremove(segments,0);
|
|
nullfree(s); /* do not nest because arg is eval'd twice */
|
|
}
|
|
nczm_join(segments,&keyprefix);
|
|
nclistfreeall(segments);
|
|
ncurifree(uri);
|
|
}
|
|
#endif
|
|
|
|
static char*
|
|
makekey(const char* key)
|
|
{
|
|
char* truekey = NULL;
|
|
nczm_concat(keyprefix,key,&truekey);
|
|
return truekey;
|
|
}
|
|
|
|
static void
|
|
title(const char* func)
|
|
{
|
|
printf("testing: %s:\n",func);
|
|
fflush(stdout);
|
|
}
|
|
|
|
static int
|
|
reportx(int pf, const char* tag, const char* op, NCZMAP* map)
|
|
{
|
|
char s[4096];
|
|
snprintf(s,sizeof(s),"%s: %s",tag,op);
|
|
return report(pf,s,map);
|
|
}
|
|
|
|
static int
|
|
report(int pf, const char* op, NCZMAP* map)
|
|
{
|
|
const char* result;
|
|
switch (pf) {
|
|
case PASS: result = "Pass"; break;
|
|
case XFAIL: result = "XFail"; break;
|
|
case FAIL: default: result = "Fail"; break;
|
|
}
|
|
fprintf(stderr,"%s: %s\n",result,op);
|
|
fflush(stderr);
|
|
if(pf == FAIL) {
|
|
if(map) (void)nczmap_close(map,0);
|
|
exit(1);
|
|
}
|
|
return NC_NOERR;
|
|
}
|