netcdf-c/plugins/H5Znoop.c
Dennis Heimbigner 7b09290a3a Improve filter installation process to avoid use of an extra shell script
re: https://github.com/Unidata/netcdf-c/issues/2338
re: https://github.com/Unidata/netcdf-c/issues/2294

In issue https://github.com/Unidata/netcdf-c/issues/2338,
Ed Hartnett suggested a better way to install filters to a user
defined location -- for Automake, anyway.

This PR implements that suggestion. It turns out to be more
complicated than it appears, so there are fair number of changes;
mostly to shell scripts. Most of the change is in plugins/Makefile.am.

NOTE: this PR still does NOT address the use of HDF5_PLUGIN_PATH
as the default; this turns out to be complex when dealing with NCZarr.
So this will be addressed in a subsequent post 4.9.0 PR.

## Misc. Changes
1. Record the occurrences of incomplete codecs in libnczarr so that
   they can be included in _Codecs attribute correctly. This allows
   users to see what missing filters are referenced in the Zarr file.
   Primarily affects libnczarr/zfilter.[ch]. Also required creating a
   new no-effect filter: H5Zunknown.c.
2. Move the unknown filter test to a separate test file.
3. Incorporates PR https://github.com/Unidata/netcdf-c/pull/2343
2022-05-14 16:05:48 -06:00

250 lines
6.7 KiB
C

#include "config.h"
#include <stdlib.h>
#include <string.h>
#include <assert.h>
#include <stdio.h>
#include <sys/types.h>
#include <netcdf_json.h>
#include "netcdf_filter_build.h"
#ifndef NOOP_INSTANCE
#define NOOP_INSTANCE 0
#endif
#if NOOP_INSTANCE == 1
const static int instance[1] = {1};
#endif
#if NOOP_INSTANCE == 0
const static int instance[1] = {0};
#endif
/* use a temporary */
#define H5Z_FILTER_NOOP 40000
/* WARNING:
Starting with HDF5 version 1.10.x, the plugin code MUST be
careful when using the standard *malloc()*, *realloc()*, and
*free()* function.
In the event that the code is allocating, reallocating, for
free'ing memory that either came from or will be exported to the
calling HDF5 library, then one MUST use the corresponding HDF5
functions *H5allocate_memory()*, *H5resize_memory()*,
*H5free_memory()* [5] to avoid memory failures.
Additionally, if your filter code leaks memory, then the HDF5 library
will generate an error.
*/
#undef DEBUG
extern void NC_h5filterspec_fix8(void* mem, int decode);
static htri_t H5Z_noop_can_apply(hid_t dcpl_id, hid_t type_id, hid_t space_id);
static size_t H5Z_filter_noop(unsigned int, size_t, const unsigned int cd_values[], size_t, size_t*, void**);
static H5Z_class2_t H5Z_NOOP[1] = {{
H5Z_CLASS_T_VERS, /* H5Z_class_t version */
#if NOOP_INSTANCE == 0
(H5Z_filter_t)(H5Z_FILTER_NOOP), /* Filter id number */
#else
(H5Z_filter_t)(H5Z_FILTER_NOOP+1), /* Filter id number */
#endif
1, /* encoder_present flag (set to true) */
1, /* decoder_present flag (set to true) */
#if NOOP_INSTANCE == 0
"noop", /* Filter name for debugging */
#else
"noop1", /* Filter name for debugging */
#endif
(H5Z_can_apply_func_t)H5Z_noop_can_apply, /* The "can apply" callback */
NULL, /* The "set local" callback */
(H5Z_func_t)H5Z_filter_noop, /* The actual filter function */
}};
/* External Discovery Functions */
DLLEXPORT
H5PL_type_t
H5PLget_plugin_type(void)
{
return H5PL_TYPE_FILTER;
}
DLLEXPORT
const void*
H5PLget_plugin_info(void)
{
return H5Z_NOOP;
}
/* Make this explicit */
/*
* The "can_apply" callback returns positive a valid combination, zero for an
* invalid combination and negative for an error.
*/
static htri_t
H5Z_noop_can_apply(hid_t dcpl_id, hid_t type_id, hid_t space_id)
{
return 1; /* Assume it can always apply */
}
static size_t
H5Z_filter_noop(unsigned int flags, size_t cd_nelmts,
const unsigned int cd_values[], size_t nbytes,
size_t *buf_size, void **buf)
{
void* newbuf;
size_t i;
const char* direction = (flags & H5Z_FLAG_REVERSE) ? "decompress" : "compress";
NC_UNUSED(instance);
printf("direction=%s id=%lu cd_nelmts=%lu cd_values=",direction,(unsigned long)H5Z_NOOP[0].id,(unsigned long)cd_nelmts);
for(i=0;i<cd_nelmts;i++)
printf(" %u",cd_values[i]);
printf("\n");
fflush(stdout);
if (flags & H5Z_FLAG_REVERSE) {
/* Replace buffer */
newbuf = H5allocate_memory(*buf_size,0);
if(newbuf == NULL) abort();
memcpy(newbuf,*buf,*buf_size);
/* reclaim old buffer */
H5free_memory(*buf);
*buf = newbuf;
} else {
/* Replace buffer */
newbuf = H5allocate_memory(*buf_size,0);
if(newbuf == NULL) abort();
memcpy(newbuf,*buf,*buf_size);
/* reclaim old buffer */
H5free_memory(*buf);
*buf = newbuf;
}
return *buf_size;
}
/**************************************************/
/* NCZarr Codec API */
/* Codec Format
{
"id": "test",
"p0": "<unsigned int>",
"p1": "<unsigned int>",
"p2": "<unsigned int>",
...
"pn": "<unsigned int>",
}
*/
/* Forward */
static int NCZ_noop_codec_to_hdf5(const char* codec, size_t* nparamsp, unsigned** paramsp);
static int NCZ_noop_hdf5_to_codec(size_t nparams, const unsigned* params, char** codecp);
/* Structure for NCZ_PLUGIN_CODEC */
static NCZ_codec_t NCZ_noop_codec = {/* NCZ_codec_t codec fields */
NCZ_CODEC_CLASS_VER, /* Struct version number */
NCZ_CODEC_HDF5, /* Struct sort */
#if NOOP_INSTANCE == 0
"noop", /* Standard name/id of the codec */
H5Z_FILTER_NOOP, /* HDF5 alias for noop */
#else
"noop1", /* Standard name/id of the codec */
H5Z_FILTER_NOOP+1, /* HDF5 alias for noop */
#endif
NULL, /*NCZ_noop_codec_initialize*/
NULL, /*NCZ_noop_codec_finalize*/
NCZ_noop_codec_to_hdf5,
NCZ_noop_hdf5_to_codec,
NULL, /*NCZ_noop_modify_parameters*/
};
/* External Export API */
DLLEXPORT
const void*
NCZ_get_codec_info(void)
{
return (void*)&NCZ_noop_codec;
}
/* NCZarr Interface Functions */
static int
NCZ_noop_codec_to_hdf5(const char* codec_json, size_t* nparamsp, unsigned** paramsp)
{
int stat = NC_NOERR;
NCjson* jcodec = NULL;
NCjson* jtmp = NULL;
int i,nparams = 0;
unsigned* params = NULL;
char field[1024];
/* parse the JSON */
if(NCJparse(codec_json,0,&jcodec))
{stat = NC_EFILTER; goto done;}
if(NCJsort(jcodec) != NCJ_DICT) {stat = NC_EPLUGIN; goto done;}
/* Verify the codec ID */
if(NCJdictget(jcodec,"id",&jtmp))
{stat = NC_EFILTER; goto done;}
if(jtmp == NULL || !NCJisatomic(jtmp)) {stat = NC_EINVAL; goto done;}
if(strcmp(NCJstring(jtmp),NCZ_noop_codec.codecid)!=0) {stat = NC_EINVAL; goto done;}
nparams = (NCJlength(jcodec) - 1) / 2; /* -1 for id each param is key+value */
if((params = (unsigned*)calloc(nparams,sizeof(unsigned)))== NULL)
{stat = NC_ENOMEM; goto done;}
/* This filter has an arbitrary number of parameters named p0...pn */
for(i=0;i<nparams;i++) {
struct NCJconst jc;
snprintf(field,sizeof(field),"p%d",i);
if(NCJdictget(jcodec,field,&jtmp))
{stat = NC_EFILTER; goto done;}
if(NCJcvt(jtmp,NCJ_INT,&jc))
{stat = NC_EFILTER; goto done;}
if(jc.ival < 0 || jc.ival > NC_MAX_UINT) {stat = NC_EINVAL; goto done;}
params[i] = (unsigned)jc.ival;
}
if(nparamsp) *nparamsp = nparams;
if(paramsp) {*paramsp = params; params = NULL;}
done:
if(params) free(params);
NCJreclaim(jcodec);
return stat;
}
static int
NCZ_noop_hdf5_to_codec(size_t nparams, const unsigned* params, char** codecp)
{
int i,stat = NC_NOERR;
char json[8192];
char value[1024];
if(nparams != 0 && params == NULL)
{stat = NC_EINVAL; goto done;}
snprintf(json,sizeof(json),"{\"id\": \"%s\"",NCZ_noop_codec.codecid);
for(i=0;i<nparams;i++) {
snprintf(value,sizeof(value),", \"p%d\": \"%u\"",i,params[i]);
strlcat(json,value,sizeof(json));
}
strlcat(json,"}",sizeof(json));
if(codecp) {
if((*codecp = strdup(json))==NULL) {stat = NC_ENOMEM; goto done;}
}
done:
return stat;
}