mirror/netcdf-c
2
0
Fork 0
mirror of https://github.com/Unidata/netcdf-c.git synced 2024-12-21 08:39:46 +08:00
Code Issues Packages Projects Releases Wiki Activity
4e4209b6f0
netcdf-c/ncgen3/load.c
Dennis Heimbigner 6901206927 Regularize the semantics of mkstemp. 
re: https://github.com/Unidata/netcdf-c/issues/1827

The issue is partly resolved by this PR. The proximate problem appears to be that the semantics of mkstemp in **nix is different than the semantics of _mktemp_s in Windows. I had thought they were the same but that is incorrect. The _mktemp_s function will only produce 26 different files and so the netcdf temp file code will fail after about that many iterations.

So, to solve this, I created my own version of mkstemp for windows that uses a random number generator. This appears to solve the reported issue.  I also added the testcase ncdap_test/test_manyurls but made it conditional on --enable-dap-long-tests because it is very slow.

I did note that the provided test program now fails after some 800 iterations with a libcurl error claiming it cannot resolve the host name. My belief is that the library is just running out of resources at this point: too many open curl handles or some such. I doubt if this failure is fixable.

So bottom line is that it is really important to do nc_close when you are finished with a file.

Misc. Other Changes:

1. I took the opportunity to clean up some bad string hacks in the code. Specifically
    * change all uses of strncat to strlcat
    * remove old string hacks: occoncat and occopycat
2. Add heck to see if test.opendap.org is running and if not, then skip test
3. Make CYGWIN use TEMP environment variable
2021-05-14 11:33:03 -06:00

574 lines
14 KiB
C
Raw Blame History

/*********************************************************************
* Copyright 2018, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
* $Id: load.c,v 1.35 2009/11/17 18:15:08 dmh Exp $
*********************************************************************/
#include "config.h"
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <ctype.h>
#include <assert.h>
#include <netcdf.h>
#include "generic.h"
#include "ncgen.h"
#include "genlib.h"
extern int netcdf_flag;
extern int c_flag;
extern int fortran_flag;
#define MIN(a,b) (((a) < (b)) ? (a) : (b))
#define MAX(a,b) (((a) > (b)) ? (a) : (b))
#define fpr (void) fprintf
/*
* Remove trailing zeros (after decimal point) but not trailing decimal
* point from ss, a string representation of a floating-point number that
* might include an exponent part.
*/
static void
tztrim(
char *ss /* returned string representing dd */
)
{
char *cp, *ep;
cp = ss;
if (*cp == '-')
cp++;
while(isdigit((int)*cp) || *cp == '.')
cp++;
if (*--cp == '.')
return;
ep = cp+1;
while (*cp == '0')
cp--;
cp++;
if (cp == ep)
return;
while (*ep)
*cp++ = *ep++;
*cp = '\0';
return;
}
/* generate C to put netCDF record from in-memory data */
static void
gen_load_c(
void *rec_start
)
{
int idim, ival;
char *val_string = NULL;
char *charvalp = NULL;
short *shortvalp = NULL;
int *intvalp = NULL;
float *floatvalp = NULL;
double *doublevalp = NULL;
char stmnt[C_MAX_STMNT];
size_t stmnt_len;
char s2[C_MAX_STMNT] = {'\0'};
if (!vars[varnum].has_data)
return;
cline("");
sprintf(stmnt, " {\t\t\t/* store %s */", vars[varnum].name);
cline(stmnt);
if (vars[varnum].ndims > 0) {
if (vars[varnum].dims[0] == rec_dim) {
sprintf(stmnt, " static size_t %s_start[RANK_%s];",
vars[varnum].lname, vars[varnum].lname);
cline(stmnt);
sprintf(stmnt, " static size_t %s_count[RANK_%s];",
vars[varnum].lname, vars[varnum].lname);
cline(stmnt);
}
/* load variable with data values using static initialization */
sprintf(stmnt, " static %s %s[] = {",
ncctype(vars[varnum].type),
vars[varnum].lname);
stmnt_len = strlen(stmnt);
switch (vars[varnum].type) {
case NC_CHAR:
val_string = cstrstr((char *) rec_start, var_len);
sprintf(s2, "%s", val_string);
strlcat(stmnt, s2, C_MAX_STMNT);
free(val_string);
break;
default:
switch (vars[varnum].type) {
case NC_BYTE:
charvalp = (char *) rec_start;
break;
case NC_SHORT:
shortvalp = (short *) rec_start;
break;
case NC_INT:
intvalp = (int *) rec_start;
break;
case NC_FLOAT:
floatvalp = (float *) rec_start;
break;
case NC_DOUBLE:
doublevalp = (double *) rec_start;
break;
default: break;
}
for (ival = 0; ival < var_len-1; ival++) {
switch (vars[varnum].type) {
case NC_BYTE:
assert(charvalp != NULL);
sprintf(s2, "%d, ", *charvalp++);
break;
case NC_SHORT:
assert(shortvalp != NULL);
sprintf(s2, "%d, ", *shortvalp++);
break;
case NC_INT:
assert(intvalp != NULL);
sprintf(s2, "%ld, ", (long)*intvalp++);
break;
case NC_FLOAT:
assert(floatvalp != NULL);
sprintf(s2, "%.8g, ", *floatvalp++);
break;
case NC_DOUBLE:
assert(doublevalp != NULL);
sprintf(s2, "%#.16g", *doublevalp++);
tztrim(s2);
strcat(s2, ", ");
break;
default: break;
}
stmnt_len += strlen(s2);
if (stmnt_len < C_MAX_STMNT)
strcat(stmnt, s2);
else {
cline(stmnt);
strcpy(stmnt,s2);
stmnt_len = strlen(stmnt);
}
}
for (;ival < var_len; ival++) {
switch (vars[varnum].type) {
case NC_BYTE:
assert(charvalp != NULL);
sprintf(s2, "%d", *charvalp);
break;
case NC_SHORT:
assert(shortvalp != NULL);
sprintf(s2, "%d", *shortvalp);
break;
case NC_INT:
assert(intvalp != NULL);
sprintf(s2, "%ld", (long)*intvalp);
break;
case NC_FLOAT:
assert(floatvalp != NULL);
sprintf(s2, "%.8g", *floatvalp);
break;
case NC_DOUBLE:
assert(doublevalp != NULL);
sprintf(s2, "%#.16g", *doublevalp++);
tztrim(s2);
break;
default: break;
}
stmnt_len += strlen(s2);
if (stmnt_len < C_MAX_STMNT)
strcat(stmnt, s2);
else {
cline(stmnt);
strcpy(stmnt,s2);
stmnt_len = strlen(stmnt);
}
}
break;
}
strcat(stmnt,"};");
cline(stmnt);
if (vars[varnum].dims[0] == rec_dim) {
sprintf(stmnt,
" %s_len = %lu; /* number of records of %s data */",
dims[rec_dim].lname,
(unsigned long)vars[varnum].nrecs, /* number of recs for this variable */
vars[varnum].name);
cline(stmnt);
for (idim = 0; idim < vars[varnum].ndims; idim++) {
sprintf(stmnt, " %s_start[%d] = 0;",
vars[varnum].lname,
idim);
cline(stmnt);
}
for (idim = 0; idim < vars[varnum].ndims; idim++) {
sprintf(stmnt, " %s_count[%d] = %s_len;",
vars[varnum].lname,
idim,
dims[vars[varnum].dims[idim]].lname);
cline(stmnt);
}
}
if (vars[varnum].dims[0] == rec_dim) {
sprintf(stmnt,
" stat = nc_put_vara_%s(ncid, %s_id, %s_start, %s_count, %s);",
ncstype(vars[varnum].type),
vars[varnum].lname,
vars[varnum].lname,
vars[varnum].lname,
vars[varnum].lname);
} else { /* non-record variables */
sprintf(stmnt,
" stat = nc_put_var_%s(ncid, %s_id, %s);",
ncstype(vars[varnum].type),
vars[varnum].lname,
vars[varnum].lname);
}
cline(stmnt);
} else { /* scalar variables */
/* load variable with data values using static initialization */
sprintf(stmnt, " static %s %s = ",
ncctype(vars[varnum].type),
vars[varnum].lname);
switch (vars[varnum].type) {
case NC_CHAR:
val_string = cstrstr((char *) rec_start, var_len);
val_string[strlen(val_string)-1] = '\0';
sprintf(s2, "'%s'", &val_string[1]);
free(val_string);
break;
case NC_BYTE:
charvalp = (char *) rec_start;
sprintf(s2, "%d", *charvalp);
break;
case NC_SHORT:
shortvalp = (short *) rec_start;
sprintf(s2, "%d", *shortvalp);
break;
case NC_INT:
intvalp = (int *) rec_start;
sprintf(s2, "%ld", (long)*intvalp);
break;
case NC_FLOAT:
floatvalp = (float *) rec_start;
sprintf(s2, "%.8g", *floatvalp);
break;
case NC_DOUBLE:
doublevalp = (double *) rec_start;
sprintf(s2, "%#.16g", *doublevalp++);
tztrim(s2);
break;
default: break;
}
strlcat(stmnt, s2, C_MAX_STMNT);
strlcat(stmnt,";", C_MAX_STMNT);
cline(stmnt);
sprintf(stmnt,
" stat = nc_put_var_%s(ncid, %s_id, &%s);",
ncstype(vars[varnum].type),
vars[varnum].lname,
vars[varnum].lname);
cline(stmnt);
}
cline(" check_err(stat,__LINE__,__FILE__);");
cline(" }");
}
/*
* Add to a partial Fortran statement, checking if it's too long. If it is too
* long, output the first part of it as a single statement with continuation
* characters and start a new (probably invalid) statement with the remainder.
* This will cause a Fortran compiler error, but at least all the information
* will be available.
*/
static void
fstrcat(
char *s, /* source string of stement being built */
const char *t, /* string to be appended to source */
size_t *slenp /* pointer to length of source string */
)
{
size_t slen = *slenp;
*slenp += strlen(t);
if (*slenp >= FORT_MAX_STMNT) {
derror("FORTRAN statement too long: %s",s);
fline(s);
strncpy(s, t, FORT_MAX_STMNT);
*slenp = strlen(s);
} else {
/* Suppress a coverity-related issue without actually
ignoring it in the coverity dashboard. */
/* coverity[unsigned_compare] */
#if 0
strncat(s, t, MAX(0,MIN(strlen(t),strlen(s)-(strlen(t)))));
#else
strlcat(s, t, slen);
#endif
}
}
/*
* Create Fortran data statement to initialize numeric variable with
* values.
*/
static void
f_var_init(
int varnum, /* which variable */
void *rec_start /* start of data */
)
{
char *val_string;
char *charvalp;
short *shortvalp;
int *intvalp;
float *floatvalp;
double *doublevalp;
char stmnt[FORT_MAX_STMNT];
size_t stmnt_len;
char s2[FORT_MAX_STMNT];
int ival;
/* load variable with data values */
sprintf(stmnt, "data %s /",vars[varnum].lname);
stmnt_len = strlen(stmnt);
switch (vars[varnum].type) {
case NC_BYTE:
charvalp = (char *) rec_start;
for (ival = 0; ival < var_len-1; ival++) {
val_string = fstring(NC_BYTE,(void *)charvalp++,0);
sprintf(s2, "%s, ", val_string);
fstrcat(stmnt, s2, &stmnt_len);
free(val_string);
}
val_string = fstring(NC_BYTE,(void *)charvalp++,0);
fstrcat(stmnt, val_string, &stmnt_len);
free(val_string);
break;
case NC_SHORT:
shortvalp = (short *) rec_start;
for (ival = 0; ival < var_len-1; ival++) {
sprintf(s2, "%d, ", *shortvalp++);
fstrcat(stmnt, s2, &stmnt_len);
}
sprintf(s2, "%d", *shortvalp);
fstrcat(stmnt, s2, &stmnt_len);
break;
case NC_INT:
intvalp = (int *) rec_start;
for (ival = 0; ival < var_len-1; ival++) {
sprintf(s2, "%ld, ", (long)*intvalp++);
fstrcat(stmnt, s2, &stmnt_len);
}
sprintf(s2, "%ld", (long)*intvalp);
fstrcat(stmnt, s2, &stmnt_len);
break;
case NC_FLOAT:
floatvalp = (float *) rec_start;
for (ival = 0; ival < var_len-1; ival++) {
sprintf(s2, "%.8g, ", *floatvalp++);
fstrcat(stmnt, s2, &stmnt_len);
}
sprintf(s2, "%.8g", *floatvalp);
fstrcat(stmnt, s2, &stmnt_len);
break;
case NC_DOUBLE:
doublevalp = (double *) rec_start;
for (ival = 0; ival < var_len-1; ival++) {
sprintf(s2, "%#.16g", *doublevalp++);
tztrim(s2);
expe2d(s2); /* change 'e' to 'd' in exponent */
fstrcat(s2, ", ", &stmnt_len);
fstrcat(stmnt, s2, &stmnt_len);
}
sprintf(s2, "%#.16g", *doublevalp++);
tztrim(s2);
expe2d(s2);
fstrcat(stmnt, s2, &stmnt_len);
break;
default:
derror("fstrstr: bad type");
break;
}
fstrcat(stmnt, "/", &stmnt_len);
/* For record variables, store data statement for later use;
otherwise, just print it. */
if (vars[varnum].ndims > 0 && vars[varnum].dims[0] == rec_dim) {
char *dup_stmnt = emalloc(strlen(stmnt)+1);
strcpy(dup_stmnt, stmnt); /* ULTRIX missing strdup */
vars[varnum].data_stmnt = dup_stmnt;
} else {
fline(stmnt);
}
}
/* make Fortran to put record */
static void
gen_load_fortran(
void *rec_start
)
{
char stmnt[FORT_MAX_STMNT];
struct vars *v = &vars[varnum];
if (!v->has_data)
return;
if (v->ndims == 0 || v->dims[0] != rec_dim) {
sprintf(stmnt, "* store %s", v->name);
fline(stmnt);
}
/* generate code to initialize variable with values found in CDL input */
if (v->type != NC_CHAR) {
f_var_init(varnum, rec_start);
} else {
v->data_stmnt = fstrstr(rec_start, valnum);
}
if (v->ndims >0 && v->dims[0] == rec_dim) {
return;
}
if (v->type != NC_CHAR) {
sprintf(stmnt, "iret = nf_put_var_%s(ncid, %s_id, %s)",
nfftype(v->type), v->lname, v->lname);
} else {
char *char_expr = fstrstr(rec_start, valnum);
if(strlen("iret = nf_put_var_(ncid, _id, )") +
strlen(nfftype(v->type)) +
strlen(v->lname) +
strlen(char_expr) > FORT_MAX_STMNT) {
derror("FORTRAN statement to assign values to %s too long!",
v->lname);
exit(9);
}
sprintf(stmnt, "iret = nf_put_var_%s(ncid, %s_id, %s)",
nfftype(v->type), v->lname, char_expr);
free(char_expr);
}
fline(stmnt);
fline("call check_err(iret)");
}
/* invoke netcdf calls (or generate C or Fortran code) to load netcdf variable
* from in-memory data. Assumes following global variables set from yacc
* parser:
* int varnum - number of variable to be loaded.
* struct vars[varnum] - structure containing info on variable, specifically
* name, type, ndims, dims, fill_value, has_data
* int rec_dim - id of record dimension, or -1 if none
* struct dims[] - structure containing name and size of dimensions.
*/
int
put_variable(
void *rec_start /* points to data to be loaded */
)
{
if (netcdf_flag)
load_netcdf(rec_start); /* put variable values */
if (c_flag) /* create C code to put values */
gen_load_c(rec_start);
if (fortran_flag) /* create Fortran code to put values */
gen_load_fortran(rec_start);
return 0;
}
/* write out variable's data from in-memory structure */
void
load_netcdf(
void *rec_start
)
{
int idim;
int stat = NC_NOERR;
size_t start[NC_MAX_VAR_DIMS];
size_t count[NC_MAX_VAR_DIMS];
char *charvalp;
short *shortvalp;
int *intvalp;
float *floatvalp;
double *doublevalp;
/* load values into variable */
switch (vars[varnum].type) {
case NC_CHAR:
case NC_BYTE:
charvalp = (char *) rec_start;
break;
case NC_SHORT:
shortvalp = (short *) rec_start;
break;
case NC_INT:
intvalp = (int *) rec_start;
break;
case NC_FLOAT:
floatvalp = (float *) rec_start;
break;
case NC_DOUBLE:
doublevalp = (double *) rec_start;
break;
default: break;
}
if (vars[varnum].ndims > 0) {
/* initialize start to upper left corner (0,0,0,...) */
start[0] = 0;
if (vars[varnum].dims[0] == rec_dim) {
count[0] = vars[varnum].nrecs;
}
else {
count[0] = dims[vars[varnum].dims[0]].size;
}
}
for (idim = 1; idim < vars[varnum].ndims; idim++) {
start[idim] = 0;
count[idim] = dims[vars[varnum].dims[idim]].size;
}
switch (vars[varnum].type) {
case NC_BYTE:
stat = nc_put_vara_schar(ncid, varnum, start, count,
(signed char *)charvalp);
break;
case NC_CHAR:
stat = nc_put_vara_text(ncid, varnum, start, count, charvalp);
break;
case NC_SHORT:
stat = nc_put_vara_short(ncid, varnum, start, count, shortvalp);
break;
case NC_INT:
stat = nc_put_vara_int(ncid, varnum, start, count, intvalp);
break;
case NC_FLOAT:
stat = nc_put_vara_float(ncid, varnum, start, count, floatvalp);
break;
case NC_DOUBLE:
stat = nc_put_vara_double(ncid, varnum, start, count, doublevalp);
break;
default: break;
}
check_err(stat);
}
Reference in New Issue View Git Blame Copy Permalink