mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-11-27 07:30:33 +08:00
3db4f013bf
Specific changes:
1. Add dap4 code: libdap4 and dap4_test.
Note that until the d4ts server problem is solved, dap4 is turned off.
2. Modify various files to support dap4 flags:
configure.ac, Makefile.am, CMakeLists.txt, etc.
3. Add nc_test/test_common.sh. This centralizes
the handling of the locations of various
things in the build tree: e.g. where is
ncgen.exe located. See nc_test/test_common.sh
for details.
4. Modify .sh files to use test_common.sh
5. Obsolete separate oc2 by moving it to be part of
netcdf-c. This means replacing code with netcdf-c
equivalents.
5. Add --with-testserver to configure.ac to allow
override of the servers to be used for --enable-dap-remote-tests.
6. There were multiple versions of nctypealignment code. Try to
centralize in libdispatch/doffset.c and include/ncoffsets.h
7. Add a unit test for the ncuri code because of its complexity.
8. Move the findserver code out of libdispatch and into
a separate, self contained program in ncdap_test and dap4_test.
9. Move the dispatch header files (nc{3,4}dispatch.h) to
.../include because they are now shared by modules.
10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts.
11. Make use of MREMAP if available
12. Misc. minor changes e.g.
- #include <config.h> -> #include "config.h"
- Add some no-install headers to /include
- extern -> EXTERNL and vice versa as needed
- misc header cleanup
- clean up checking for misc. unix vs microsoft functions
13. Change copyright decls in some files to point to LICENSE file.
14. Add notes to RELEASENOTES.md
636 lines
17 KiB
C
636 lines
17 KiB
C
/*********************************************************************
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* Copyright 1993, UCAR/Unidata
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* See netcdf/COPYRIGHT file for copying and redistribution conditions.
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*********************************************************************/
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#include "config.h"
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#ifdef USE_PARALLEL
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#include "netcdf_par.h"
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#endif
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#include "dapincludes.h"
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#include "dapdump.h"
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#include "dceconstraints.h"
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#define CHECK(n) if((n) != NC_NOERR) {return (n);} else {}
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static void dumptreer(CDFnode* root, NCbytes* buf, int indent, int visible);
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int
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dumpmetadata(int ncid, NChdr** hdrp)
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{
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int stat,i,j,k;
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NChdr* hdr = (NChdr*)calloc(1,sizeof(NChdr));
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MEMCHECK(hdr,NC_ENOMEM);
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hdr->ncid = ncid;
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hdr->content = ncbytesnew();
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if(hdrp) *hdrp = hdr;
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stat = nc_inq(hdr->ncid,
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&hdr->ndims,
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&hdr->nvars,
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&hdr->ngatts,
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&hdr->unlimid);
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CHECK(stat);
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if(ncdap3debug > 0) {
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fprintf(stdout,"ncid=%d ngatts=%d ndims=%d nvars=%d unlimid=%d\n",
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hdr->ncid,hdr->ngatts,hdr->ndims,hdr->nvars,hdr->unlimid);
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}
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hdr->gatts = (NCattribute*)calloc(1,hdr->ngatts*sizeof(NCattribute));
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MEMCHECK(hdr->gatts,NC_ENOMEM);
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if(hdr->ngatts > 0)
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fprintf(stdout,"global attributes:\n");
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for(i=0;i<hdr->ngatts;i++) {
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NCattribute* att = &hdr->gatts[i];
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char attname[NC_MAX_NAME];
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nc_type nctype;
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size_t typesize;
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size_t nvalues;
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stat = nc_inq_attname(hdr->ncid,NC_GLOBAL,i,attname);
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CHECK(stat);
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att->name = nulldup(attname);
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stat = nc_inq_att(hdr->ncid,NC_GLOBAL,att->name,&nctype,&nvalues);
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CHECK(stat);
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att->etype = nctypetodap(nctype);
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typesize = nctypesizeof(att->etype);
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fprintf(stdout,"\t[%d]: name=%s type=%s values(%lu)=",
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i,att->name,nctypetostring(octypetonc(att->etype)),
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(unsigned long)nvalues);
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if(nctype == NC_CHAR) {
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size_t len = typesize*nvalues;
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char* values = (char*)malloc(len+1);/* for null terminate*/
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MEMCHECK(values,NC_ENOMEM);
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stat = nc_get_att(hdr->ncid,NC_GLOBAL,att->name,values);
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CHECK(stat);
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values[len] = '\0';
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fprintf(stdout," '%s'",values);
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} else {
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size_t len = typesize*nvalues;
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char* values = (char*)malloc(len);
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MEMCHECK(values,NC_ENOMEM);
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stat = nc_get_att(hdr->ncid,NC_GLOBAL,att->name,values);
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CHECK(stat);
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for(k=0;k<nvalues;k++) {
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fprintf(stdout," ");
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dumpdata1(octypetonc(att->etype),k,values);
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}
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}
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fprintf(stdout,"\n");
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}
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hdr->dims = (Dim*)malloc(hdr->ndims*sizeof(Dim));
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MEMCHECK(hdr->dims,NC_ENOMEM);
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for(i=0;i<hdr->ndims;i++) {
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hdr->dims[i].dimid = i;
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stat = nc_inq_dim(hdr->ncid,
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hdr->dims[i].dimid,
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hdr->dims[i].name,
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&hdr->dims[i].size);
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CHECK(stat);
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fprintf(stdout,"dim[%d]: name=%s size=%lu\n",
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i,hdr->dims[i].name,(unsigned long)hdr->dims[i].size);
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}
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hdr->vars = (Var*)malloc(hdr->nvars*sizeof(Var));
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MEMCHECK(hdr->vars,NC_ENOMEM);
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for(i=0;i<hdr->nvars;i++) {
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Var* var = &hdr->vars[i];
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nc_type nctype;
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var->varid = i;
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stat = nc_inq_var(hdr->ncid,
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var->varid,
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var->name,
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&nctype,
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&var->ndims,
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var->dimids,
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&var->natts);
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CHECK(stat);
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var->nctype = (nctype);
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fprintf(stdout,"var[%d]: name=%s type=%s |dims|=%d",
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i,
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var->name,
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nctypetostring(var->nctype),
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var->ndims);
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fprintf(stdout," dims={");
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for(j=0;j<var->ndims;j++) {
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fprintf(stdout," %d",var->dimids[j]);
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}
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fprintf(stdout,"}\n");
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var->atts = (NCattribute*)malloc(var->natts*sizeof(NCattribute));
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MEMCHECK(var->atts,NC_ENOMEM);
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for(j=0;j<var->natts;j++) {
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NCattribute* att = &var->atts[j];
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char attname[NC_MAX_NAME];
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size_t typesize;
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char* values;
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nc_type nctype;
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size_t nvalues;
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stat = nc_inq_attname(hdr->ncid,var->varid,j,attname);
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CHECK(stat);
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att->name = nulldup(attname);
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stat = nc_inq_att(hdr->ncid,var->varid,att->name,&nctype,&nvalues);
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CHECK(stat);
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att->etype = nctypetodap(nctype);
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typesize = nctypesizeof(att->etype);
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values = (char*)malloc(typesize*nvalues);
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MEMCHECK(values,NC_ENOMEM);
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stat = nc_get_att(hdr->ncid,var->varid,att->name,values);
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CHECK(stat);
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fprintf(stdout,"\tattr[%d]: name=%s type=%s values(%lu)=",
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j,att->name,nctypetostring(octypetonc(att->etype)),(unsigned long)nvalues);
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for(k=0;k<nvalues;k++) {
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fprintf(stdout," ");
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dumpdata1(octypetonc(att->etype),k,values);
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}
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fprintf(stdout,"\n");
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}
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}
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fflush(stdout);
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return NC_NOERR;
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}
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void
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dumpdata1(nc_type nctype, size_t index, char* data)
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{
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switch (nctype) {
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case NC_CHAR:
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fprintf(stdout,"'%c' %hhd",data[index],data[index]);
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break;
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case NC_BYTE:
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fprintf(stdout,"%hdB",((signed char*)data)[index]);
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break;
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case NC_UBYTE:
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fprintf(stdout,"%huB",((unsigned char*)data)[index]);
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break;
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case NC_SHORT:
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fprintf(stdout,"%hdS",((short*)data)[index]);
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break;
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case NC_USHORT:
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fprintf(stdout,"%hdUS",((unsigned short*)data)[index]);
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break;
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case NC_INT:
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fprintf(stdout,"%d",((int*)data)[index]);
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break;
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case NC_UINT:
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fprintf(stdout,"%uU",((unsigned int*)data)[index]);
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break;
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case NC_FLOAT:
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fprintf(stdout,"%#gF",((float*)data)[index]);
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break;
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case NC_DOUBLE:
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fprintf(stdout,"%#gD",((double*)data)[index]);
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break;
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case NC_STRING:
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fprintf(stdout,"\"%s\"",((char**)data)[index]);
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break;
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default:
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fprintf(stdout,"Unknown type: %i",nctype);
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break;
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}
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fflush(stdout);
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}
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/* Following should be kept consistent with
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the makeXXXstring3 routines in constraints3.c
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*/
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/* Convert an NCprojection instance into a string
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that can be used with the url
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*/
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char*
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dumpprojections(NClist* projections)
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{
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char* tmp;
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int v = dceverbose;
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dceverbose = 1;
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tmp = dcelisttostring(projections,",");
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dceverbose = v;
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return tmp;
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}
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char*
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dumpprojection(DCEprojection* proj)
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{
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char* tmp;
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int v = dceverbose;
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dceverbose = 1;
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tmp = dcetostring((DCEnode*)proj);
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dceverbose = v;
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return tmp;
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}
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char*
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dumpselections(NClist* selections)
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{
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return dcelisttostring(selections,"&");
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}
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char*
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dumpselection(DCEselection* sel)
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{
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return dcetostring((DCEnode*)sel);
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}
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char*
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dumpconstraint(DCEconstraint* con)
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{
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char* tmp;
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int v = dceverbose;
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dceverbose = 1;
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tmp = dcetostring((DCEnode*)con);
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dceverbose = v;
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return tmp;
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}
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char*
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dumpsegments(NClist* segments)
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{
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return dcelisttostring(segments,".");
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}
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char*
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dumppath(CDFnode* leaf)
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{
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NClist* path = nclistnew();
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NCbytes* buf = ncbytesnew();
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char* result;
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int i;
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if(leaf == NULL) return nulldup("");
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collectnodepath(leaf,path,!WITHDATASET);
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for(i=0;i<nclistlength(path);i++) {
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CDFnode* node = (CDFnode*)nclistget(path,i);
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if(i > 0) ncbytescat(buf,".");
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ncbytescat(buf,node->ncbasename);
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}
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result = ncbytesdup(buf);
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ncbytesfree(buf);
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nclistfree(path);
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return result;
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}
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static void
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dumpindent(int indent, NCbytes* buf)
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{
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static char* indentstr = " ";
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int i;
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for(i=0;i<indent;i++) ncbytescat(buf,indentstr);
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}
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static void
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dumptreer1(CDFnode* root, NCbytes* buf, int indent, char* tag, int visible)
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{
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int i;
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dumpindent(indent,buf);
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ncbytescat(buf,tag);
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ncbytescat(buf," {\n");
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for(i=0;i<nclistlength(root->subnodes);i++) {
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CDFnode* node = (CDFnode*)nclistget(root->subnodes,i);
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if(visible && root->invisible) continue;
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if(root->nctype == NC_Grid) {
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if(i==0) {
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dumpindent(indent+1,buf);
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ncbytescat(buf,"Array:\n");
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} else if(i==1) {
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dumpindent(indent+1,buf);
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ncbytescat(buf,"Maps:\n");
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}
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dumptreer(node,buf,indent+2,visible);
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} else {
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dumptreer(node,buf,indent+1,visible);
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}
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}
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dumpindent(indent,buf);
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ncbytescat(buf,"} ");
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ncbytescat(buf,(root->ncbasename?root->ncbasename:"<?>"));
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}
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static void
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dumptreer(CDFnode* root, NCbytes* buf, int indent, int visible)
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{
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int i;
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char* primtype = NULL;
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NClist* dimset = NULL;
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if(visible && root->invisible) return;
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switch (root->nctype) {
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case NC_Dataset:
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dumptreer1(root,buf,indent,"Dataset",visible);
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break;
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case NC_Sequence:
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dumptreer1(root,buf,indent,"Sequence",visible);
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break;
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case NC_Structure:
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dumptreer1(root,buf,indent,"Structure",visible);
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break;
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case NC_Grid:
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dumptreer1(root,buf,indent,"Grid",visible);
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break;
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case NC_Atomic:
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switch (root->etype) {
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case NC_BYTE: primtype = "byte"; break;
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case NC_CHAR: primtype = "char"; break;
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case NC_SHORT: primtype = "short"; break;
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case NC_INT: primtype = "int"; break;
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case NC_FLOAT: primtype = "float"; break;
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case NC_DOUBLE: primtype = "double"; break;
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case NC_UBYTE: primtype = "ubyte"; break;
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case NC_USHORT: primtype = "ushort"; break;
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case NC_UINT: primtype = "uint"; break;
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case NC_INT64: primtype = "int64"; break;
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case NC_UINT64: primtype = "uint64"; break;
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case NC_STRING: primtype = "string"; break;
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default: break;
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}
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dumpindent(indent,buf);
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ncbytescat(buf,primtype);
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ncbytescat(buf," ");
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ncbytescat(buf,(root->ncbasename?root->ncbasename:"<?>"));
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break;
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default: break;
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}
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if(nclistlength(root->array.dimsetplus) > 0) dimset = root->array.dimsetplus;
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else if(nclistlength(root->array.dimset0) > 0) dimset = root->array.dimset0;
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if(dimset != NULL) {
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for(i=0;i<nclistlength(dimset);i++) {
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CDFnode* dim = (CDFnode*)nclistget(dimset,i);
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char tmp[64];
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ncbytescat(buf,"[");
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if(dim->ncbasename != NULL) {
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ncbytescat(buf,dim->ncbasename);
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ncbytescat(buf,"=");
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}
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snprintf(tmp,sizeof(tmp),"%lu",(unsigned long)dim->dim.declsize);
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ncbytescat(buf,tmp);
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ncbytescat(buf,"]");
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}
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}
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ncbytescat(buf,";\n");
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}
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char*
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dumptree(CDFnode* root)
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{
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NCbytes* buf = ncbytesnew();
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char* result;
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dumptreer(root,buf,0,0);
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result = ncbytesdup(buf);
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ncbytesfree(buf);
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return result;
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}
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char*
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dumpvisible(CDFnode* root)
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{
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NCbytes* buf = ncbytesnew();
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char* result;
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dumptreer(root,buf,0,1);
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result = ncbytesdup(buf);
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ncbytesfree(buf);
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return result;
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}
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/* Provide detailed data on a CDFnode */
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char*
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dumpnode(CDFnode* node)
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{
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NCbytes* buf = ncbytesnew();
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char* result;
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int i;
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char* nctype = NULL;
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char* primtype = NULL;
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char tmp[1024];
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switch (node->nctype) {
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case NC_Dataset: nctype = "Dataset"; break;
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case NC_Sequence: nctype = "Sequence"; break;
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case NC_Structure: nctype = "Structure"; break;
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case NC_Grid: nctype = "Grid"; break;
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case NC_Atomic:
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switch (node->etype) {
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case NC_BYTE: primtype = "byte"; break;
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case NC_CHAR: primtype = "char"; break;
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case NC_SHORT: primtype = "short"; break;
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case NC_INT: primtype = "int"; break;
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case NC_FLOAT: primtype = "float"; break;
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case NC_DOUBLE: primtype = "double"; break;
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case NC_UBYTE: primtype = "ubyte"; break;
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case NC_USHORT: primtype = "ushort"; break;
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case NC_UINT: primtype = "uint"; break;
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case NC_INT64: primtype = "int64"; break;
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case NC_UINT64: primtype = "uint64"; break;
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case NC_STRING: primtype = "string"; break;
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default: break;
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}
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break;
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default: break;
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}
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snprintf(tmp,sizeof(tmp),"%s %s {\n",
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(nctype?nctype:primtype),node->ocname);
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"ocnode=%lx\n",(unsigned long)node->ocnode);
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"container=%s\n",
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(node->container?node->container->ocname:"null"));
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"root=%s\n",
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(node->root?node->root->ocname:"null"));
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"ncbasename=%s\n",node->ncbasename);
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"ncfullname=%s\n",node->ncfullname);
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"|subnodes|=%ld\n",nclistlength(node->subnodes));
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"externaltype=%d\n",node->externaltype);
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"ncid=%d\n",node->ncid);
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"maxstringlength=%ld\n",node->maxstringlength);
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"sequencelimit=%ld\n",node->sequencelimit);
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ncbytescat(buf,tmp);
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snprintf(tmp,sizeof(tmp),"usesequence=%d\n",node->usesequence);
|
|
ncbytescat(buf,tmp);
|
|
snprintf(tmp,sizeof(tmp),"elided=%d\n",node->elided);
|
|
ncbytescat(buf,tmp);
|
|
snprintf(tmp,sizeof(tmp),"invisible=%d\n",node->invisible);
|
|
ncbytescat(buf,tmp);
|
|
snprintf(tmp,sizeof(tmp),"attachment=%s\n",
|
|
(node->attachment?node->attachment->ocname:"null"));
|
|
ncbytescat(buf,tmp);
|
|
snprintf(tmp,sizeof(tmp),"rank=%lu\n",nclistlength(node->array.dimset0));
|
|
ncbytescat(buf,tmp);
|
|
for(i=0;i<nclistlength(node->array.dimset0);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(node->array.dimset0,i);
|
|
snprintf(tmp,sizeof(tmp),"dims[%d]={\n",i);
|
|
ncbytescat(buf,tmp);
|
|
snprintf(tmp,sizeof(tmp)," ocname=%s\n",dim->ocname);
|
|
ncbytescat(buf,tmp);
|
|
snprintf(tmp,sizeof(tmp)," ncbasename=%s\n",dim->ncbasename);
|
|
ncbytescat(buf,tmp);
|
|
snprintf(tmp,sizeof(tmp)," dimflags=%u\n",
|
|
(unsigned int)dim->dim.dimflags);
|
|
ncbytescat(buf,tmp);
|
|
snprintf(tmp,sizeof(tmp)," declsize=%lu\n",
|
|
(unsigned long)dim->dim.declsize);
|
|
ncbytescat(buf,tmp);
|
|
snprintf(tmp,sizeof(tmp)," }\n");
|
|
ncbytescat(buf,tmp);
|
|
}
|
|
|
|
result = ncbytesdup(buf);
|
|
ncbytesfree(buf);
|
|
return result;
|
|
}
|
|
|
|
char*
|
|
dumpalign(NCalignment* ncalign)
|
|
{
|
|
char* result;
|
|
char tmp[1024];
|
|
if(ncalign == NULL)
|
|
result = nulldup("NCalignment{size=-- alignment=-- offset=--}");
|
|
else {
|
|
snprintf(tmp,sizeof(tmp),"NCalignment{size=%lu alignment=%lu offset=%lu}",
|
|
ncalign->size,ncalign->alignment,ncalign->offset);
|
|
result = nulldup(tmp);
|
|
}
|
|
return result;
|
|
}
|
|
|
|
char*
|
|
dumpcachenode(NCcachenode* node)
|
|
{
|
|
char* result = NULL;
|
|
char tmp[8192];
|
|
int i;
|
|
NCbytes* buf;
|
|
|
|
if(node == NULL) return strdup("cachenode{null}");
|
|
buf = ncbytesnew();
|
|
result = dcebuildconstraintstring(node->constraint);
|
|
snprintf(tmp,sizeof(tmp),"cachenode%s(%lx){size=%lu; constraint=%s; vars=",
|
|
node->isprefetch?"*":"",
|
|
(unsigned long)node,
|
|
(unsigned long)node->xdrsize,
|
|
result);
|
|
ncbytescat(buf,tmp);
|
|
if(nclistlength(node->vars)==0)
|
|
ncbytescat(buf,"null");
|
|
else for(i=0;i<nclistlength(node->vars);i++) {
|
|
CDFnode* var = (CDFnode*)nclistget(node->vars,i);
|
|
if(i > 0) ncbytescat(buf,",");
|
|
ncbytescat(buf,makecdfpathstring(var,"."));
|
|
}
|
|
ncbytescat(buf,"}");
|
|
result = ncbytesdup(buf);
|
|
ncbytesfree(buf);
|
|
return result;
|
|
}
|
|
|
|
char*
|
|
dumpcache(NCcache* cache)
|
|
{
|
|
char* result = NULL;
|
|
char tmp[8192];
|
|
int i;
|
|
NCbytes* buf;
|
|
|
|
if(cache == NULL) return strdup("cache{null}");
|
|
buf = ncbytesnew();
|
|
snprintf(tmp,sizeof(tmp),"cache{limit=%lu; size=%lu;\n",
|
|
(unsigned long)cache->cachelimit,
|
|
(unsigned long)cache->cachesize);
|
|
ncbytescat(buf,tmp);
|
|
if(cache->prefetch) {
|
|
ncbytescat(buf,"\tprefetch=");
|
|
ncbytescat(buf,dumpcachenode(cache->prefetch));
|
|
ncbytescat(buf,"\n");
|
|
}
|
|
if(nclistlength(cache->nodes) > 0) {
|
|
for(i=0;i<nclistlength(cache->nodes);i++) {
|
|
NCcachenode* node = (NCcachenode*)nclistget(cache->nodes,i);
|
|
ncbytescat(buf,"\t");
|
|
ncbytescat(buf,dumpcachenode(node));
|
|
ncbytescat(buf,"\n");
|
|
}
|
|
}
|
|
ncbytescat(buf,"}");
|
|
result = ncbytesdup(buf);
|
|
ncbytesfree(buf);
|
|
return result;
|
|
}
|
|
|
|
/* This should be consistent with makeslicestring3 in constraints3.c */
|
|
char*
|
|
dumpslice(DCEslice* slice)
|
|
{
|
|
char buf[8192];
|
|
char tmp[8192];
|
|
buf[0] = '\0';
|
|
if(slice->last > slice->declsize && slice->declsize > 0)
|
|
slice->last = slice->declsize - 1;
|
|
if(slice->count == 1) {
|
|
snprintf(tmp,sizeof(tmp),"[%lu]",
|
|
(unsigned long)slice->first);
|
|
} else if(slice->stride == 1) {
|
|
snprintf(tmp,sizeof(tmp),"[%lu:%lu]",
|
|
(unsigned long)slice->first,
|
|
(unsigned long)slice->last);
|
|
} else {
|
|
snprintf(tmp,sizeof(tmp),"[%lu:%lu:%lu]",
|
|
(unsigned long)slice->first,
|
|
(unsigned long)slice->stride,
|
|
(unsigned long)slice->last);
|
|
}
|
|
strcat(buf,tmp);
|
|
return strdup(tmp);
|
|
}
|
|
|
|
char*
|
|
dumpslices(DCEslice* slice, unsigned int rank)
|
|
{
|
|
int i;
|
|
NCbytes* buf;
|
|
char* result = NULL;
|
|
|
|
buf = ncbytesnew();
|
|
for(i=0;i<rank;i++,slice++) {
|
|
char* sslice = dumpslice(slice);
|
|
if(sslice != NULL) {
|
|
ncbytescat(buf,sslice);
|
|
free(sslice);
|
|
}
|
|
}
|
|
result = ncbytesdup(buf);
|
|
ncbytesfree(buf);
|
|
return result;
|
|
}
|
|
|
|
void
|
|
dumpraw(void* o)
|
|
{
|
|
fprintf(stderr,"%s\n",dcerawtostring(o));
|
|
fflush(stderr);
|
|
}
|
|
|
|
void
|
|
dumplistraw(NClist* l)
|
|
{
|
|
fprintf(stderr,"%s\n",dcerawlisttostring(l));
|
|
fflush(stderr);
|
|
}
|
|
|
|
/* For debugging */
|
|
void
|
|
dumpstringlist(NClist* l)
|
|
{
|
|
int i;
|
|
for(i=0;i<nclistlength(l);i++) {
|
|
const char* s = (const char*)nclistget(l,i);
|
|
fprintf(stderr,"[%d]: |%s|\n",i,s);
|
|
}
|
|
fflush(stderr);
|
|
}
|