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netcdf-c/nczarr_test
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Dennis Heimbigner 53464e8963 Allow optional use of libxml2 
re: https://github.com/Unidata/netcdf-c/issues/2119

H/T to [Egbert Eich](https://github.com/e4t) and [Bas Couwenberg](https://github.com/sebastic) for this PR.

It is undesirable to make netcdf be dependent on the availability
of libxml2, but it is desirable to allow its use if available.

In order to do this, a wrapper API (include/ncxml.h) was constructed
that supports either ezxml or libxml2 as the implementation.
Additionally, the xml support code was moved to a new directory
netcdf-c/libncxml.

Primary changes:
* Create a new sub-directory named netcdf-c/libncxml to hold all the xml implementation code.
* Move ezxml.c and ezxml.h to libncxml
* Create a wrapper API -- include/ncxml.h
* Create an implementation, ncxml_ezxml.c to support use of ezxml.
* Create an implementation, ncxml_xml2.c to support use of libxml2.
* Add a check for libxml2 in configure.ac and CMakeLists.txt
* Modify libdap to use the wrapper API instead of ezxml directly.

Misc. Other Changes:
* Change include/netcdf_json.h from built source to be part of the distribution.
2021-11-01 22:37:05 -06:00
..
refs
bm_chunks3.c Additional Fixes to NCZarr 2020-12-16 20:48:02 -07:00
bm_timer.h Add missing files so --enable-benchmarks works again. 2021-08-07 21:19:40 -06:00
bm_utils.c Add missing files so --enable-benchmarks works again. 2021-08-07 21:19:40 -06:00
bm_utils.h Add missing files so --enable-benchmarks works again. 2021-08-07 21:19:40 -06:00
CMakeLists.txt Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
Makefile.am Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ncdumpchunks.c Merge branch 'master' into eliminate_need_for_hdf5-1.6-API 2021-05-28 07:11:13 -06:00
ref_any.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_avail1.cdl More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_avail1.dmp More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_avail1.txt More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_blosc_zmap.txt Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_byte_fill_value_null.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_byte_fill_value_null.zarr.zip Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_byte.cdl Add test cases 2021-08-10 14:15:24 -06:00
ref_byte.zarr.zip Add test cases 2021-08-10 14:15:24 -06:00
ref_bzip2.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_fillonly.cdl Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
ref_filtered.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_groups_regular.cdl Add test cases 2021-08-10 14:15:24 -06:00
ref_groups.h5 Add test cases 2021-08-10 14:15:24 -06:00
ref_misc1.cdl Fix some additional edges cases for mapping slices to chunks 2020-12-19 21:17:46 -07:00
ref_misc1.dmp More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_misc2.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_multi.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_nczarr2zarr.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_ndims.cdl Fix some additional edges cases for mapping slices to chunks 2020-12-19 21:17:46 -07:00
ref_ndims.dmp More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_newformatpure.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_oldformat.cdl Move to Version 2 NCZarr Extended Meta-Data 2021-07-17 16:55:30 -06:00
ref_oldformat.zip Fix bad chunkpath calculation 2021-07-18 16:20:22 -06:00
ref_perdimspecs.cdl Provide a Number of fixes/improvements to NCZarr 2020-11-19 17:01:04 -07:00
ref_power_901_constants.cdl Fix JSON quoted string processing in libnczarr 2021-05-06 16:39:44 -06:00
ref_power_901_constants.zip Fix JSON quoted string processing in libnczarr 2021-05-06 16:39:44 -06:00
ref_purezarr_base.cdl Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_purezarr.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_quotes.cdl Fix JSON quoted string processing in libnczarr 2021-05-06 16:39:44 -06:00
ref_quotes.zip Fix JSON quoted string processing in libnczarr 2021-05-06 16:39:44 -06:00
ref_rem.cdl Fix some additional edges cases for mapping slices to chunks 2020-12-19 21:17:46 -07:00
ref_rem.dmp More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_skip.cdl Additional Fixes to NCZarr 2020-12-16 20:48:02 -07:00
ref_skip.txt More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_skipw.cdl Fix some additional edges cases for mapping slices to chunks 2020-12-19 21:17:46 -07:00
ref_t_meta_dim1.cdl
ref_t_meta_var1.cdl
ref_ut_json_build.txt
ref_ut_json_parse.txt
ref_ut_map_create.cdl Add zip file support 2021-01-28 20:11:01 -07:00
ref_ut_map_readdata_nz4.txt
ref_ut_map_readmeta2.txt Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_ut_map_readmeta_nz4.txt
ref_ut_map_readmeta_nzf.txt
ref_ut_map_readmeta.txt Add zip file support 2021-01-28 20:11:01 -07:00
ref_ut_map_search_nz4.txt Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_map_search_nzf.txt Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_map_search.txt Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_ut_map_writedata.cdl Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_ut_map_writemeta2.cdl Add support for the XArray Zarr _ARRAY_DIMENSIONS attribute 2021-02-24 13:46:11 -07:00
ref_ut_map_writemeta.cdl Add zip file support 2021-01-28 20:11:01 -07:00
ref_ut_mapapi_create.cdl Add zip file support 2021-01-28 20:11:01 -07:00
ref_ut_mapapi_data.cdl Add zip file support 2021-01-28 20:11:01 -07:00
ref_ut_mapapi_meta.cdl Add zip file support 2021-01-28 20:11:01 -07:00
ref_ut_mapapi_search_nz4.txt Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_mapapi_search_nzf.txt Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
ref_ut_mapapi_search_s3.txt
ref_ut_mapapi_search.txt Add zip file support 2021-01-28 20:11:01 -07:00
ref_ut_proj.txt More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_ut_testmap_create.cdl Add zip file support 2021-01-28 20:11:01 -07:00
ref_whole.cdl More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_whole.txt More NCZarr optimizations 2021-01-06 13:35:59 -07:00
ref_xarray.cdl Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
ref_zarr_test_data.cdl.gz Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
run_chunkcases.sh Upgrade the nczarr code to match Zarr V2 2021-04-24 19:48:15 -06:00
run_fillonlyz.sh Add zip file support 2021-01-28 20:11:01 -07:00
run_filter.sh Significantly Improve Amazon S3 Cloud Storage Support 2021-09-27 18:36:33 -06:00
run_interop.sh Allow optional use of libxml2 2021-11-01 22:37:05 -06:00
run_it_chunks1.sh Add zip file support 2021-01-28 20:11:01 -07:00
run_misc.sh Add test cases 2021-08-10 14:15:24 -06:00
run_nccopyz.sh More modification in support of #1940 2021-03-09 10:49:30 -07:00
run_ncgen4.sh Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
run_nczarr_fill.sh Add test cases 2021-08-10 14:15:24 -06:00
run_newformat.sh Move to Version 2 NCZarr Extended Meta-Data 2021-07-17 16:55:30 -06:00
run_perf_chunks1.sh Add zip file support 2021-01-28 20:11:01 -07:00
run_purezarr.sh Significantly Improve Amazon S3 Cloud Storage Support 2021-09-27 18:36:33 -06:00
run_s3_cleanup.sh Add zip file support 2021-01-28 20:11:01 -07:00
run_specific_filters.sh Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
run_ut_chunk.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
run_ut_map.sh Add zip file support 2021-01-28 20:11:01 -07:00
run_ut_mapapi.sh Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
run_ut_misc.sh Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
s3util.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
test_nczarr_utils.h Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
test_nczarr.sh Significantly Improve Amazon S3 Cloud Storage Support 2021-09-27 18:36:33 -06:00
testfilter_misc.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
testfilter_multi.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
testfilter_order.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
testfilter_repeat.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
testfilter.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
tst_chunkcases.c Add zip file support 2021-01-28 20:11:01 -07:00
tst_fillonlyz.c Add zip file support 2021-01-28 20:11:01 -07:00
tst_nczfilter.c Add filter support to NCZarr 2021-09-02 17:04:26 -06:00
tst_utils.c Merge branch 'master' into eliminate_need_for_hdf5-1.6-API 2021-05-28 07:11:13 -06:00
tst_utils.h Add zip file support 2021-01-28 20:11:01 -07:00
tst_zchunks2.c Additional Fixes to NCZarr 2020-12-16 20:48:02 -07:00
tst_zchunks3.c Add zip file support 2021-01-28 20:11:01 -07:00
tst_zchunks.c Additional Fixes to NCZarr 2020-12-16 20:48:02 -07:00
ut_chunking.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_includes.h Fix bad chunkpath calculation 2021-07-18 16:20:22 -06:00
ut_json.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_map.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_mapapi.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_projections.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_projtest.h
ut_test.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_test.h Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
ut_util.c Add zip file support 2021-01-28 20:11:01 -07:00
ut_util.h Fix some additional edges cases for mapping slices to chunks 2020-12-19 21:17:46 -07:00
z4dump.c
zhex.c Add zip file support 2021-01-28 20:11:01 -07:00
zisjson.c Move to Version 2 NCZarr Extended Meta-Data 2021-07-17 16:55:30 -06:00
zmapio.c Fix additional S3 support issues 2021-10-29 20:06:37 -06:00
zs3parse.c Fix Mingw versus XGetopt (again) 2021-05-26 14:27:27 -06:00