mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-11-21 03:13:42 +08:00
b02703aa24
After a long discussion, I implemented the rules at the end of that issue. They are documented in nccopy.1. Additionally, I added a new, per-variable, -c flag that allows for the direct setting of the chunking parameters for a variable. The form is -c var:c1,c2,...ck where var is the name of the variable (possibly a fully qualified name) and the ci are the chunksizes for that variable. It must be the case that the rank of the variable is k. If the new form is used as well as the old form, then the new form overrides the old form for the specified variable. Note that multiple occurrences of the new form -c flag may be specified. Misc. Other fixes 1. Added -M <size> option to nccopy to specify the minimum allowable chunksize. 2. Removed the unused variables from bigmeta.c (Issue https://github.com/Unidata/netcdf-c/issues/1079) 3. Fixed failure of nc_test4/tst_filter.sh by using the new -M flag (#1) to allow filter test on a small chunk size.
265 lines
5.9 KiB
C
265 lines
5.9 KiB
C
/*
|
|
Create a netcdf-4 file with horrendously large metadata.
|
|
*/
|
|
|
|
#include "config.h"
|
|
#include <stdlib.h>
|
|
#include <stdio.h>
|
|
#include <string.h>
|
|
#include <time.h>
|
|
#include <assert.h>
|
|
#include <netcdf.h>
|
|
#ifdef HAVE_GETOPT_H
|
|
#include <getopt.h>
|
|
#endif
|
|
|
|
#undef DEBUG
|
|
|
|
/*
|
|
Total number of groups is NGROUPS^TREEDEPTH
|
|
TREEDEPTH = Depth of the group tree
|
|
NGROUPS = Number subgroups per group
|
|
NGROUPATTRS = Number group attributes per group
|
|
NDIMS = Number dimensions per group
|
|
NTYPES = Number user types per group
|
|
NVARS = Number of variables per group
|
|
VARRANK = Rank of variables: must be <= NDIMS
|
|
NVARATTRS = Number attributes per variable
|
|
*/
|
|
|
|
/* Define the Defaults */
|
|
#if 1
|
|
#define TREEDEPTH 6
|
|
#define NGROUPS 2
|
|
#define NGROUPATTRS 100
|
|
#define NDIMS 100
|
|
#define NTYPES 10
|
|
#define NVARS 100
|
|
#define VARRANK 2
|
|
#define NVARATTRS 500
|
|
#endif
|
|
|
|
/* Alternate Defaults for testing*/
|
|
#if 0
|
|
#define TREEDEPTH 2
|
|
#define NGROUPS 2
|
|
#define NGROUPATTRS 2
|
|
#define NDIMS 2
|
|
#define NTYPES 2
|
|
#define NVARS 2
|
|
#define VARRANK 2
|
|
#define NVARATTRS NGROUPATTRS
|
|
#endif
|
|
|
|
#define FILE "bigmeta.nc"
|
|
|
|
#define CHECK(expr) assert((expr) == NC_NOERR)
|
|
|
|
static int treedepth = TREEDEPTH;
|
|
static int ngroups = NGROUPS;
|
|
static int ngroupattrs = NGROUPATTRS;
|
|
static int ndims = NDIMS;
|
|
static int ntypes = NTYPES;
|
|
static int nvars = NVARS;
|
|
static int varrank = VARRANK;
|
|
static int nvarattrs = NVARATTRS;
|
|
|
|
/* Define the getopt tags */
|
|
#define OPT_UNKNOWN 0
|
|
#define OPT_TREEDEPTH 1
|
|
#define OPT_NGROUPS 2
|
|
#define OPT_NGROUPATTRS 3
|
|
#define OPT_NDIMS 4
|
|
#define OPT_NTYPES 5
|
|
#define OPT_NVARS 6
|
|
#define OPT_VARRANK 7
|
|
#define OPT_NVARATTRS 8
|
|
|
|
static struct option options[] = {
|
|
{"treedepth", 1, NULL, OPT_TREEDEPTH},
|
|
{"ngroups", 1, NULL, OPT_NGROUPS},
|
|
{"ngroupattrs", 1, NULL, OPT_NGROUPATTRS},
|
|
{"ndims", 1, NULL, OPT_NDIMS},
|
|
{"ntypes", 1, NULL, OPT_NTYPES},
|
|
{"nvars", 1, NULL, OPT_NVARS},
|
|
{"varrank", 1, NULL, OPT_VARRANK},
|
|
{"nvarattrs", 1, NULL, OPT_NVARATTRS},
|
|
{NULL, 0, NULL, 0}
|
|
};
|
|
|
|
/**************************************************/
|
|
|
|
static void
|
|
reportparameters(void)
|
|
{
|
|
fprintf(stderr,"--treedepth=%d\n",treedepth);
|
|
fprintf(stderr,"--ngroups=%d\n",ngroups);
|
|
fprintf(stderr,"--ngroupattrs=%d\n",ngroupattrs);
|
|
fprintf(stderr,"--ndims=%d\n",ndims);
|
|
fprintf(stderr,"--ntypes=%d\n",ntypes);
|
|
fprintf(stderr,"--nvars=%d\n",nvars);
|
|
fprintf(stderr,"--varrank=%d\n",varrank);
|
|
fprintf(stderr,"--nvarattrs=%d\n",nvarattrs);
|
|
fflush(stderr);
|
|
}
|
|
|
|
/* Build a compound type with two fields */
|
|
static void
|
|
buildcmpdtype(int grpid, int typindex)
|
|
{
|
|
char name[NC_MAX_NAME+1];
|
|
int typid;
|
|
snprintf(name,NC_MAX_NAME,"cmpd%d",typindex);
|
|
CHECK(nc_def_compound(grpid, 2*sizeof(int), name, &typid));
|
|
CHECK(nc_insert_compound(grpid, typid, "f1", 0, NC_INT));
|
|
CHECK(nc_insert_compound(grpid, typid, "f2", sizeof(int), NC_INT));
|
|
}
|
|
|
|
/* Build an enum type with two members */
|
|
static void
|
|
buildenumtype(int grpid, int typindex)
|
|
{
|
|
char name[NC_MAX_NAME+1];
|
|
int typid;
|
|
int val0 = 17;
|
|
int val1 = 37;
|
|
snprintf(name,NC_MAX_NAME,"enum%d",typindex);
|
|
CHECK(nc_def_enum(grpid, NC_INT, name, &typid));
|
|
CHECK(nc_insert_enum(grpid, typid, "m0", &val0));
|
|
CHECK(nc_insert_enum(grpid, typid, "m1", &val1));
|
|
}
|
|
|
|
/* Build attributes for either group or var */
|
|
static void
|
|
buildatts(int grpid, int varid)
|
|
{
|
|
char name[NC_MAX_NAME+1];
|
|
int i, count;
|
|
|
|
count = (varid == NC_GLOBAL? ngroupattrs : nvarattrs);
|
|
|
|
for(i=0;i<count;i++) {
|
|
snprintf(name,NC_MAX_NAME,"a%d",i);
|
|
CHECK(nc_put_att_int(grpid, varid, name, NC_INT, 1, &i));
|
|
}
|
|
}
|
|
|
|
static void
|
|
buildgroup(int parent, int grpindex, int depth)
|
|
{
|
|
char name[NC_MAX_NAME+1];
|
|
int i, grpid, varid;
|
|
int dimids[NDIMS];
|
|
|
|
if(depth == 0) return;
|
|
|
|
snprintf(name,NC_MAX_NAME,"g%d",grpindex);
|
|
CHECK(nc_def_grp(parent, name, &grpid));
|
|
|
|
/* Add dimensions and capture ids */
|
|
for(i=0;i<ndims;i++) {
|
|
snprintf(name,NC_MAX_NAME,"d%d",i);
|
|
CHECK(nc_def_dim(grpid, name, i, &dimids[i]));
|
|
}
|
|
|
|
/* Add types: even index => compound, odd => enum */
|
|
for(i=0;i<ntypes;i++) {
|
|
if((i % 2) == 0)
|
|
buildcmpdtype(grpid,i);
|
|
else
|
|
buildenumtype(grpid,i);
|
|
}
|
|
|
|
/* Add variables (plus their attributes */
|
|
for(i=0;i<nvars;i++) {
|
|
snprintf(name,NC_MAX_NAME,"v%d",i);
|
|
CHECK(nc_def_var(grpid, name, NC_INT, VARRANK, dimids, &varid));
|
|
/* Make variable be nofill */
|
|
CHECK(nc_def_var_fill(grpid,varid,1,NULL));
|
|
buildatts(grpid,varid);
|
|
}
|
|
|
|
/* Add group attributes */
|
|
buildatts(grpid,NC_GLOBAL);
|
|
|
|
/* Build subgroups */
|
|
for(i=0;i<ngroups;i++) {
|
|
buildgroup(grpid,i,depth-1);
|
|
}
|
|
|
|
}
|
|
|
|
int
|
|
main(int argc, char **argv)
|
|
{
|
|
int i, ncid;
|
|
time_t starttime, endtime;
|
|
long long delta;
|
|
int tag;
|
|
|
|
if(argc > 1) {
|
|
while ((tag = getopt_long_only(argc, argv, "", options, NULL)) >= 0) {
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"arg=%s value=%s\n",argv[optind-1],optarg);
|
|
#endif
|
|
switch (tag) {
|
|
case OPT_TREEDEPTH:
|
|
treedepth = atoi(optarg);
|
|
break;
|
|
case OPT_NGROUPS:
|
|
ngroups = atoi(optarg);
|
|
break;
|
|
case OPT_NGROUPATTRS:
|
|
ngroupattrs = atoi(optarg);
|
|
break;
|
|
case OPT_NDIMS:
|
|
ndims = atoi(optarg);
|
|
break;
|
|
case OPT_NTYPES:
|
|
ntypes = atoi(optarg);
|
|
break;
|
|
case OPT_NVARS:
|
|
nvars = atoi(optarg);
|
|
break;
|
|
case OPT_VARRANK:
|
|
varrank = atoi(optarg);
|
|
break;
|
|
case OPT_NVARATTRS:
|
|
nvarattrs = atoi(optarg);
|
|
break;
|
|
case ':':
|
|
fprintf(stderr,"missing argument\n");
|
|
exit(1);
|
|
case '?':
|
|
default:
|
|
fprintf(stderr,"unknown option\n");
|
|
exit(1);
|
|
}
|
|
}
|
|
}
|
|
|
|
reportparameters();
|
|
|
|
starttime = 0;
|
|
endtime = 0;
|
|
|
|
time(&starttime);
|
|
|
|
CHECK(nc_create(FILE, NC_NETCDF4, &ncid));
|
|
/* Build subgroups */
|
|
for(i=0;i<NGROUPS;i++) {
|
|
buildgroup(ncid,i,TREEDEPTH - 1);
|
|
}
|
|
|
|
CHECK(nc_close(ncid));
|
|
|
|
time(&endtime);
|
|
|
|
/* Compute the delta 1 second resolution is fine for this */
|
|
delta = (long long)(endtime - starttime);
|
|
printf("create delta=%lld\n",delta);
|
|
return 0;
|
|
|
|
return 0;
|
|
}
|