mirror/netcdf-c
2
0
Fork 0
mirror of https://github.com/Unidata/netcdf-c.git synced 2024-12-03 08:01:25 +08:00
Code Issues Packages Projects Releases Wiki Activity
363718215c
netcdf-c/libdap4/ncd4.h
Dennis Heimbigner fb40a72b45 Improve performance of the nc_reclaim_data and nc_copy_data functions. 
re: Issue https://github.com/Unidata/netcdf-c/issues/2685
re: PR https://github.com/Unidata/netcdf-c/pull/2179

As noted in PR https://github.com/Unidata/netcdf-c/pull/2179,
the old code did not allow for reclaiming instances of types,
nor for properly copying them. That PR provided new functions
capable of reclaiming/copying instances of arbitrary types.

However, as noted by Issue https://github.com/Unidata/netcdf-c/issues/2685, using these
most general functions resulted in a significant performance
degradation, even for common cases.

This PR attempts to mitigate the cost of using the general
reclaim/copy functions in two ways.

First, the previous functions operating at the top level by
using ncid and typeid arguments. These functions were augmented
with equivalent versions that used the netcdf-c library internal
data structures to allow direct access to needed information.
These new functions are used internally to the library.

The second mitigation involves optimizing the internal functions
by providing early tests for common cases. This avoids
unnecessary recursive function calls.

The overall result is a significant improvement in speed by a
factor of roughly twenty -- your mileage may vary. These
optimized functions are still not as fast as the original (more
limited) functions, but they are getting close. Additional optimizations are
possible. But the cost is a significant "uglification" of the
code that I deemed a step too far, at least for now.

## Misc. Changes
1. Added a test case to check the proper reclamation/copy of complex types.
2. Found and fixed some places where nc_reclaim/copy should have been used.
3. Replaced, in the netcdf-c library, (almost all) occurrences of nc_reclaim_copy with calls to NC_reclaim/copy. This plus the optimizations is the primary speed-up mechanism.
4. In DAP4, the metadata is held in a substrate in-memory file; this required some changes so that the reclaim/copy code accessed that substrate dispatcher rather than the DAP4 dispatcher.
5. Re-factored and isolated the code that computes if a type is (transitively) variable-sized or not.
6. Clean up the reclamation code in ncgen; adding the use of nc_reclaim exposed some memory problems.
2023-05-20 17:11:25 -06:00

260 lines
8.8 KiB
C
Raw Blame History

/*********************************************************************
* Copyright 2018, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
*********************************************************************/
/*
External functions and state variables are
defined here, including function-like #defines.
*/
#ifndef NCD4_H
#define NCD4_H 1
#include "d4includes.h"
#include "d4util.h"
#include "d4debug.h"
#include "nc4internal.h"
/**************************************************/
/* Constants */
#define RCFILEENV "DAPRCFILE"
/* Figure out a usable max path name max */
#ifdef PATH_MAX /* *nix* */
#define NC_MAX_PATH PATH_MAX
#else
# ifdef MAX_PATH /*windows*/
# define NC_MAX_PATH MAX_PATH
# else
# define NC_MAX_PATH 4096
# endif
#endif
#define COUNTERTYPE unsigned long long
#define COUNTERSIZE sizeof(COUNTERTYPE)
/* Clear allocated memory (see e.g. d4data.c); Potentially costly*/
#undef CLEARMEM
/* Clear empty structure alignment space; Potentially costly, but probably less than CLEARMEM */
#define CLEARSTRUCT
/* Always use fixed size opaques */
#define FIXEDOPAQUE
#define DFALTOPAQUESIZE 16
/* Size of a chunk header */
#define CHUNKHDRSIZE 4
/* Special attributes */
#define D4CHECKSUMATTR "_DAP4_Checksum_CRC32"
#define D4LEATTR "_DAP4_Little_Endian"
/**************************************************/
#undef nullfree
#ifndef nullfree
#define nullfree(m) ((m)==NULL?NULL:(free(m),NULL))
#endif
#define nulldup(s) ((s)==NULL?NULL:strdup(s))
/**************************************************/
/* DSP API wrappers */
#ifdef FIX
EXTERNL int dsp_getDMR(ND4dsp* dsp, DCR** dcrp);
EXTERNL int dsp_getDAP(ND4dsp* dsp, DCR** dcrp);
EXTERNL int dsp_close(ND4dsp* dsp);
/* DSP API */
EXTERNL int dsp_open(const char* path, ND4dsp** dspp);
#endif
/**************************************************/
/* From d4http.c */
EXTERNL long NCD4_fetchhttpcode(CURL* curl);
EXTERNL int NCD4_fetchurl_file(CURL* curl, const char* url, FILE* stream, d4size_t* sizep, long* filetime);
EXTERNL int NCD4_fetchurl(CURL* curl, const char* url, NCbytes* buf, long* filetime, int* httpcode);
EXTERNL int NCD4_curlopen(CURL** curlp);
EXTERNL void NCD4_curlclose(CURL* curl);
EXTERNL int NCD4_fetchlastmodified(CURL* curl, char* url, long* filetime);
EXTERNL int NCD4_ping(const char* url);
/* From d4read.c */
EXTERNL int NCD4_readDMR(NCD4INFO* state, int flags);
EXTERNL int NCD4_readDAP(NCD4INFO* state, int flags);
EXTERNL int NCD4_seterrormessage(NCD4meta* metadata, size_t len, char* msg);
/* From d4parser.c */
EXTERNL int NCD4_parse(NCD4meta*);
EXTERNL NCD4node* NCD4_findAttr(NCD4node* container, const char* attrname);
EXTERNL NCD4node* NCD4_groupFor(NCD4node* node);
EXTERNL int NCD4_defineattr(NCD4meta* meta, NCD4node* parent, const char* aname, const char* typename, NCD4node** attrp);
/* From d4printer.c */
EXTERNL int NCD4_print(NCD4meta*, NCbytes* output);
/* From d4meta.c */
EXTERNL NCD4meta* NCD4_newmeta(NCD4INFO*);
EXTERNL void NCD4_attachraw(NCD4meta*, size_t size, void* rawdata);
EXTERNL void NCD4_reclaimMeta(NCD4meta*);
EXTERNL void NCD4_resetMeta(NCD4meta*);
EXTERNL void reclaimNode(NCD4node* node);
EXTERNL void NCD4_setdebuglevel(NCD4meta*,int);
EXTERNL int NCD4_metabuild(NCD4meta*, int ncid);
EXTERNL size_t NCD4_computeTypeSize(NCD4meta*, NCD4node* type);
EXTERNL int NCD4_findvar(NC* ncp, int ncid, int varid, NCD4node** varp, NCD4node** grpp);
/* From d4chunk.c */
EXTERNL int NCD4_dechunk(NCD4meta*);
EXTERNL int NCD4_infermode(NCD4meta* meta);
struct NCD4serial;
EXTERNL void NCD4_resetSerial(struct NCD4serial* serial, size_t rawsize, void* rawdata);
/* From d4swap.c */
EXTERNL int NCD4_swapdata(NCD4meta*, NClist* topvars);
/* From d4fix.c */
EXTERNL int NCD4_delimit(NCD4meta*, NCD4node* var, NCD4offset* offset);
EXTERNL int NCD4_moveto(NCD4meta*, NCD4node* var, d4size_t count, NCD4offset* offset);
EXTERNL int NCD4_toposort(NCD4meta*);
/* From d4data.c */
EXTERNL int NCD4_processdata(NCD4meta*);
EXTERNL int NCD4_fillinstance(NCD4meta*, NCD4node* type, NCD4offset* offset, void** dstp, NClist* blobs);
EXTERNL int NCD4_getToplevelVars(NCD4meta* meta, NCD4node* group, NClist* toplevel);
/* From d4util.c */
EXTERNL d4size_t NCD4_dimproduct(NCD4node* node);
EXTERNL size_t NCD4_typesize(nc_type tid);
EXTERNL int NCD4_isLittleEndian(void);/* Return 1 if this machine is little endian */
EXTERNL int NCD4_errorNC(int code, const int line, const char* file);
EXTERNL int NCD4_error(int code, const int line, const char* file, const char* fmt, ...);
EXTERNL char* NCD4_makeFQN(NCD4node* node);
EXTERNL char* NCD4_makeName(NCD4node*,const char* sep);
EXTERNL int NCD4_parseFQN(const char* fqn0, NClist* pieces);
EXTERNL char* NCD4_deescape(const char* esc);
EXTERNL char* NCD4_entityescape(const char* s);
EXTERNL size_t NCD4_elidenuls(char* s, size_t slen);
EXTERNL void* NCD4_getheader(void* p, NCD4HDR* hdr, int hostlittleendian);
EXTERNL void NCD4_reporterror(NCD4INFO* state);
/* From d4dump.c */
EXTERNL void NCD4_dumpbytes(size_t size, const void* data0, int swap);
EXTERNL void NCD4_tagdump(size_t size, const void* data0, int swap, const char* tag);
EXTERNL void NCD4_dumpvars(NCD4node* group);
EXTERNL union ATOMICS* NCD4_dumpatomic(NCD4node* var, void* data);
/* From d4rc.c */
EXTERNL int NCD4_rcload(void);
EXTERNL int NCD4_rcprocess(NCD4INFO* info);
EXTERNL void NCD4_rcfree(NClist* rc);
EXTERNL char* NCD4_rclookup(char* key, char* hostport);
EXTERNL int NCD4_parseproxy(NCD4INFO* info, const char* surl);
EXTERNL int NCD4_rcdefault(NCD4INFO*);
/* From d4cvt.c */
EXTERNL int NCD4_convert(nc_type srctype, nc_type dsttype, char* memory0, char* value0, size_t count);
/* d4file.c */
EXTERNL int NCD4_readDMRorDAP(NCD4INFO* d4info, NCD4mode mode);
EXTERNL void NCD4_applyclientfragmentcontrols(NCD4INFO* d4info);
EXTERNL void NCD4_applyclientquerycontrols(NCD4INFO* d4info);
/* ncd4dispatch.c */
struct NC_reservedatt; /*forward*/
EXTERNL const struct NC_reservedatt* NCD4_lookupreserved(const char* name);
/* Add an extra function whose sole purpose is to allow
configure(.ac) to test for the presence of this code.
*/
EXTERNL int nc__dap4(void);
/**************************************************/
/* Macro defined functions */
#undef NCCHECK
#undef FAIL
#define NCCHECK(expr) if((ret=(expr))) {ret = NCD4_errorNC(ret,__LINE__,__FILE__); goto done;}else{}
#define FAIL(code,fmt,...) do{ret=NCD4_error(code,__LINE__,__FILE__,fmt , ##__VA_ARGS__); goto done;}while(0)
#undef BUILDOFFSET
#define BUILDOFFSET(base,size) NCD4_buildoffset(base,size)
EXTERNL NCD4offset* NCD4_buildoffset(void* base, d4size_t size);
#undef INCR
#undef DECR
#undef DELTA
#if 0
#define INCR(offset,size) ((void*)(((char*)(offset->offset))+(size)))
#define DECR(offset,size) ((void*)(((char*)(offset->offset))-(size)))
#define DELTA(p1,p2) ((ptrdiff_t)(((char*)(p1))-((char*)(p2))))
#endif
EXTERNL void NCD4_incr(NCD4offset* p, d4size_t size);
EXTERNL void NCD4_decr(NCD4offset* p, d4size_t size);
#define INCR(offset,size) NCD4_incr(offset,size)
#define DECR(offset,size) NCD4_decr(offset,size)
#define OFFSETSIZE(p,mark) ((d4size_t)(((ptrdiff_t)(p)->offset) - ((ptrdiff_t)(mark))))
#define TRANSFER(dst,src,size) memcpy((dst),(src)->offset,size)
#define DELTA(p1,p2) ((ptrdiff_t)(((char*)(p1))-((char*)(p2))))
#define MARK(p,mark) do {(mark) = (p)->offset;} while(0)
#undef GETCOUNTER
#undef SKIPCOUNTER
/* Unclear which macros are defined for which compilers.
see: https://sourceforge.net/p/predef/wiki/Architectures/
*/
#if 0
#if defined(__arm__) && __ARM_ARCH < 8
EXTERNL d4size_t NCD4_getcounter(void* p);
#define GETCOUNTER(p) NCD4_getcounter(p)
#else
#define GETCOUNTER(p) ((d4size_t)*((COUNTERTYPE*)(p)))
#endif
#endif /*0*/
EXTERNL d4size_t NCD4_getcounter(NCD4offset* p);
#define GETCOUNTER(p) NCD4_getcounter(p)
#define SKIPCOUNTER(p) INCR(p,COUNTERSIZE)
#undef PUSH
#define PUSH(list,value) do{if((list)==NULL) {(list)=nclistnew();} else{}; nclistpush((list),(value));}while(0)
#define getnc3id(d4) (getdap(d4)->nc4id)
#define ISTOPLEVEL(var) ((var)->container == NULL || (var)->container->sort == NCD4_GROUP)
#define FILEIDPART(NCID) (((unsigned int) (NCID)) >> ID_SHIFT)
#define GROUPIDPART(NCID) (((unsigned int) (NCID)) & GRP_ID_MASK)
#define MAKENCID(grp,file) ((((unsigned int)(file)) << ID_SHIFT) | (grp))
#define getdap(ncp) ((NCD4INFO*)((NC*)ncp)->dispatchdata)
#define getnc4id(ncp) (getdap(ncp)->substrate.nc4id)
/* Convert a dap4 grpid to a substrate id */
#define makenc4id(ncp,dap4id) (((dap4id) & GRP_ID_MASK) | getdap(ncp)->substrate.nc4id)
/* and the inverse */
#define makedap4id(ncp,nc4id) (((nc4id) & GRP_ID_MASK) | (ncp)->ext_ncid)
#ifdef CLEARMEM
#define d4alloc(n) (calloc(1,(size_t)(n)))
#else
#define d4alloc(n) (malloc((size_t)(n)))
#endif
/* A number of hacks have been inserted
to deal with issues in accessing hyrax
using DAP4.
*/
#define HYRAXHACK
EXTERNL NC* NCD4_get_substrate_nc(NC* nc);
#endif /*NCD4_H*/
Reference in New Issue View Git Blame Copy Permalink