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https://github.com/Unidata/netcdf-c.git
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https://github.com/Unidata/netcdf-c/issues/1168 https://github.com/Unidata/netcdf-c/issues/1163 https://github.com/Unidata/netcdf-c/issues/1162 This PR partially fixes memory leaks in the netcdf-c library, in the ncdump utility, and in some test cases. The netcdf-c library now runs memory clean with the assumption that the --disable-utilities option is used. The primary remaining problem is ncgen. Once that is fixed, I believe the netcdf-c library will run memory clean with no limitations. Notes ----------- 1. Memory checking was performed using gcc -fsanitize=address. Valgrind-based testing has yet to be performed. 2. The pnetcdf, hdf4, and examples code has not been tested. Misc. Non-leak changes 1. Make tst_diskless2 only run when netcdf4 is enabled (issue 1162) 2. Fix CmakeLists.txt to turn off logging if ENABLE_NETCDF_4 is OFF 3. Isolated all my debug scripts into a single top-level directory called debug 4. Fix some USE_NETCDF4 dependencies in nc_test and nc_test4 Makefile.am
2823 lines
80 KiB
C
2823 lines
80 KiB
C
/*********************************************************************
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* Copyright 1993, UCAR/Unidata
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* See netcdf/COPYRIGHT file for copying and redistribution conditions.
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*********************************************************************/
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#include "dapincludes.h"
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#include "ncd2dispatch.h"
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#include "ncrc.h"
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#include "ncoffsets.h"
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#ifdef DEBUG2
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#include "dapdump.h"
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#endif
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#ifdef _MSC_VER
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#include <crtdbg.h>
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#endif
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#ifdef HAVE_GETRLIMIT
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# ifdef HAVE_SYS_RESOURCE_H
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# include <sys/time.h>
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# endif
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# ifdef HAVE_SYS_RESOURCE_H
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# include <sys/resource.h>
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# endif
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#endif
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/* Define the set of protocols known to be constrainable */
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static char* constrainableprotocols[] = {"http", "https",NULL};
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static int ncd2initialized = 0;
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/* Forward */
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static NCerror buildncstructures(NCDAPCOMMON*);
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static NCerror builddims(NCDAPCOMMON*);
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static char* getdefinename(CDFnode* node);
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static NCerror buildvars(NCDAPCOMMON*);
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static NCerror buildglobalattrs(NCDAPCOMMON*, CDFnode* root);
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static NCerror buildattribute(NCDAPCOMMON*, CDFnode*, NCattribute*);
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static void computedimindexanon(CDFnode* dim, CDFnode* var);
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static void replacedims(NClist* dims);
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static int equivalentdim(CDFnode* basedim, CDFnode* dupdim);
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static NCerror addstringdims(NCDAPCOMMON*);
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static NCerror defrecorddim(NCDAPCOMMON*);
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static NCerror defseqdims(NCDAPCOMMON*);
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static NCerror showprojection(NCDAPCOMMON*, CDFnode* var);
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static NCerror getseqdimsize(NCDAPCOMMON*, CDFnode* seq, size_t* sizep);
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static NCerror makeseqdim(NCDAPCOMMON*, CDFnode* seq, size_t count, CDFnode** sqdimp);
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static NCerror countsequence(NCDAPCOMMON*, CDFnode* xseq, size_t* sizep);
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static NCerror freeNCDAPCOMMON(NCDAPCOMMON*);
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static NCerror fetchpatternmetadata(NCDAPCOMMON*);
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static size_t fieldindex(CDFnode* parent, CDFnode* child);
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static NCerror computeseqcountconstraints(NCDAPCOMMON*, CDFnode*, NCbytes*);
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static void computeseqcountconstraintsr(NCDAPCOMMON*, CDFnode*, CDFnode**);
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static void estimatevarsizes(NCDAPCOMMON*);
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static NCerror fetchconstrainedmetadata(NCDAPCOMMON*);
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static NCerror suppressunusablevars(NCDAPCOMMON*);
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static NCerror fixzerodims(NCDAPCOMMON*);
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static void applyclientparamcontrols(NCDAPCOMMON*);
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static NCerror applyclientparams(NCDAPCOMMON*);
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/**************************************************/
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static int
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NCD2_create(const char *path, int cmode,
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size_t initialsz, int basepe, size_t *chunksizehintp,
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void* mpidata, NC_Dispatch*,NC* ncp);
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static int NCD2_redef(int ncid);
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static int NCD2__enddef(int ncid, size_t h_minfree, size_t v_align, size_t v_minfree, size_t r_align);
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static int NCD2_sync(int ncid);
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static int NCD2_abort(int ncid);
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static int NCD2_put_vara(int ncid, int varid,
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const size_t *start, const size_t *edges0,
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const void *value0,
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nc_type memtype);
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static int NCD2_get_vara(int ncid, int varid,
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const size_t *start, const size_t *edges,
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void *value,
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nc_type memtype);
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static int NCD2_put_vars(int ncid, int varid,
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const size_t *start, const size_t *edges, const ptrdiff_t* stride,
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const void *value0, nc_type memtype);
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static int NCD2_get_vars(int ncid, int varid,
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const size_t *start, const size_t *edges, const ptrdiff_t* stride,
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void *value, nc_type memtype);
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static NC_Dispatch NCD2_dispatch_base = {
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NC_FORMATX_DAP2,
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NCD2_create,
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NCD2_open,
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NCD2_redef,
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NCD2__enddef,
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NCD2_sync,
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NCD2_abort,
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NCD2_close,
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NCD2_set_fill,
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NCD2_inq_base_pe,
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NCD2_set_base_pe,
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NCD2_inq_format,
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NCD2_inq_format_extended, /*inq_format_extended*/
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NCD2_inq,
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NCD2_inq_type,
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NCD2_def_dim,
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NCD2_inq_dimid,
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NCD2_inq_dim,
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NCD2_inq_unlimdim,
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NCD2_rename_dim,
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NCD2_inq_att,
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NCD2_inq_attid,
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NCD2_inq_attname,
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NCD2_rename_att,
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NCD2_del_att,
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NCD2_get_att,
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NCD2_put_att,
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NCD2_def_var,
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NCD2_inq_varid,
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NCD2_rename_var,
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NCD2_get_vara,
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NCD2_put_vara,
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NCD2_get_vars,
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NCD2_put_vars,
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NCDEFAULT_get_varm,
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NCDEFAULT_put_varm,
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NCD2_inq_var_all,
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NCD2_var_par_access,
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NCD2_def_var_fill,
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#ifdef USE_NETCDF4
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NCD2_show_metadata,
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NCD2_inq_unlimdims,
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NCD2_inq_ncid,
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NCD2_inq_grps,
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NCD2_inq_grpname,
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NCD2_inq_grpname_full,
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NCD2_inq_grp_parent,
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NCD2_inq_grp_full_ncid,
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NCD2_inq_varids,
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NCD2_inq_dimids,
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NCD2_inq_typeids,
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NCD2_inq_type_equal,
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NCD2_def_grp,
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NCD2_rename_grp,
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NCD2_inq_user_type,
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NCD2_inq_typeid,
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NCD2_def_compound,
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NCD2_insert_compound,
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NCD2_insert_array_compound,
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NCD2_inq_compound_field,
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NCD2_inq_compound_fieldindex,
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NCD2_def_vlen,
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NCD2_put_vlen_element,
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NCD2_get_vlen_element,
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NCD2_def_enum,
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NCD2_insert_enum,
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NCD2_inq_enum_member,
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NCD2_inq_enum_ident,
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NCD2_def_opaque,
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NCD2_def_var_deflate,
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NCD2_def_var_fletcher32,
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NCD2_def_var_chunking,
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NCD2_def_var_endian,
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NCD2_def_var_filter,
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NCD2_set_var_chunk_cache,
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NCD2_get_var_chunk_cache,
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#endif /*USE_NETCDF4*/
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};
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NC_Dispatch* NCD2_dispatch_table = NULL; /* moved here from ddispatch.c */
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int
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NCD2_initialize(void)
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{
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NCD2_dispatch_table = &NCD2_dispatch_base;
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ncd2initialized = 1;
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#ifdef DEBUG
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/* force logging to go to stderr */
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nclogclose();
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if(nclogopen(NULL))
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ncsetlogging(1); /* turn it on */
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#endif
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return NC_NOERR;
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}
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int
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NCD2_finalize(void)
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{
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curl_global_cleanup();
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return NC_NOERR;
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}
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static int
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NCD2_redef(int ncid)
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{
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return (NC_EPERM);
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}
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static int
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NCD2__enddef(int ncid, size_t h_minfree, size_t v_align, size_t v_minfree, size_t r_align)
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{
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return (NC_EPERM);
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}
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static int
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NCD2_sync(int ncid)
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{
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return (NC_EINVAL);
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}
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static int
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NCD2_abort(int ncid)
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{
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return NCD2_close(ncid,NULL);
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}
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static int
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NCD2_create(const char *path, int cmode,
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size_t initialsz, int basepe, size_t *chunksizehintp,
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void* mpidata, NC_Dispatch* dispatch, NC* ncp)
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{
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return NC_EPERM;
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}
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static int
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NCD2_put_vara(int ncid, int varid,
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const size_t *start, const size_t *edges,
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const void *value,
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nc_type memtype)
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{
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return NC_EPERM;
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}
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static int
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NCD2_get_vara(int ncid, int varid,
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const size_t *start, const size_t *edges,
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void *value,
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nc_type memtype)
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{
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int stat = nc3d_getvarx(ncid, varid, start, edges, nc_ptrdiffvector1, value,memtype);
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return stat;
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}
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static int
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NCD2_put_vars(int ncid, int varid,
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const size_t *start, const size_t *edges, const ptrdiff_t* stride,
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const void *value0, nc_type memtype)
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{
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return NC_EPERM;
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}
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static int
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NCD2_get_vars(int ncid, int varid,
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const size_t *start, const size_t *edges, const ptrdiff_t* stride,
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void *value, nc_type memtype)
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{
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int stat = nc3d_getvarx(ncid, varid, start, edges, stride, value, memtype);
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return stat;
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}
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/* See ncd2dispatch.c for other version */
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int
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NCD2_open(const char* path, int mode, int basepe, size_t *chunksizehintp,
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void* mpidata, NC_Dispatch* dispatch, NC* drno)
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{
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NCerror ncstat = NC_NOERR;
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OCerror ocstat = OC_NOERR;
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NCDAPCOMMON* dapcomm = NULL;
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const char* value;
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int nc3id = -1;
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if(path == NULL)
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{ncstat = NC_EDAPURL; goto done;}
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if(dispatch == NULL)
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PANIC("NCD3_open: no dispatch table");
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/* Setup our NC and NCDAPCOMMON state*/
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dapcomm = (NCDAPCOMMON*)calloc(1,sizeof(NCDAPCOMMON));
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if(dapcomm == NULL)
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{ncstat = NC_ENOMEM; goto done;}
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NCD2_DATA_SET(drno,dapcomm);
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drno->int_ncid = nc__pseudofd(); /* create a unique id */
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dapcomm->controller = (NC*)drno;
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dapcomm->cdf.separator = ".";
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dapcomm->cdf.smallsizelimit = DFALTSMALLLIMIT;
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dapcomm->cdf.cache = createnccache();
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#ifdef HAVE_GETRLIMIT
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{ struct rlimit rl;
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if(getrlimit(RLIMIT_NOFILE, &rl) >= 0) {
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dapcomm->cdf.cache->cachecount = (size_t)(rl.rlim_cur / 2);
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}
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}
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#endif
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#ifdef OCCOMPILEBYDEFAULT
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{ int rullen = 0;
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/* set the compile flag by default */
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rullen = strlen(path)+strlen("[compile]");;
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rullen++; /* strlcat nul */
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dapcomm->oc.rawurltext = (char*)emalloc(rullen+1);
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strncpy(dapcomm->oc.rawurltext,"[compile]",rullen);
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strlcat(dapcomm->oc.rawurltext, path, rullen);
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}
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#else
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dapcomm->oc.rawurltext = strdup(path);
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#endif
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if(ncuriparse(dapcomm->oc.rawurltext,&dapcomm->oc.url) != NCU_OK)
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{ncstat = NC_EURL; goto done;}
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if(!constrainable(dapcomm->oc.url))
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SETFLAG(dapcomm->controls,NCF_UNCONSTRAINABLE);
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#ifdef COLUMBIA_HACK
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{
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const char* p;
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/* Does this url look like it is from columbia? */
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if(dapcomm->oc.url->host != NULL) {
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for(p=dapcomm->oc.url->host;*p;p++) {
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if(strncmp(p,COLUMBIA_HACK,strlen(COLUMBIA_HACK))==0)
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SETFLAG(dapcomm->controls,NCF_COLUMBIA);
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}
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}
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}
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#endif
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/* fail if we are unconstrainable but have constraints */
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if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE)) {
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if(dapcomm->oc.url->query != NULL) {
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nclog(NCLOGWARN,"Attempt to constrain an unconstrainable data source: %s",
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dapcomm->oc.url->query);
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ncstat = THROW(NC_EDAPCONSTRAINT);
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goto done;
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}
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}
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/* Use libsrc code (netcdf-3) for storing metadata */
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{
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char tmpname[32];
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/* Create fake file name: exact name must be unique,
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but is otherwise irrelevant because we are using NC_DISKLESS
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*/
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snprintf(tmpname,sizeof(tmpname),"tmp_%d",drno->int_ncid);
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/* Now, use the file to create the hidden, in-memory netcdf file.
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We want this hidden file to always be NC_CLASSIC, so we need to
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force default format temporarily in case user changed it.
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Since diskless is enabled, create file in-memory.
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*/
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{
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int new = 0; /* format netcdf-3 */
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int old = 0;
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int ncflags = NC_CLOBBER|NC_CLASSIC_MODEL;
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ncflags |= NC_DISKLESS;
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nc_set_default_format(new,&old); /* save and change */
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ncstat = nc_create(tmpname,ncflags,&nc3id);
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nc_set_default_format(old,&new); /* restore */
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dapcomm->substrate.realfile = ((ncflags & NC_DISKLESS) != 0);
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dapcomm->substrate.filename = strdup(tmpname);
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if(tmpname == NULL) ncstat = NC_ENOMEM;
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dapcomm->substrate.nc3id = nc3id;
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}
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if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
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/* Avoid fill */
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nc_set_fill(nc3id,NC_NOFILL,NULL);
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}
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dapcomm->oc.dapconstraint = (DCEconstraint*)dcecreate(CES_CONSTRAINT);
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dapcomm->oc.dapconstraint->projections = nclistnew();
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dapcomm->oc.dapconstraint->selections = nclistnew();
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/* Parse constraints to make sure they are syntactically correct */
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ncstat = dapparsedapconstraints(dapcomm,dapcomm->oc.url->query,dapcomm->oc.dapconstraint);
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if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
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/* Construct a url for oc minus any constraint and params*/
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dapcomm->oc.urltext = ncuribuild(dapcomm->oc.url,NULL,NULL,NCURIBASE);
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/* Pass to OC */
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ocstat = oc_open(dapcomm->oc.urltext,&dapcomm->oc.conn);
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if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto done;}
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#ifdef DEBUG1
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(void)oc_trace_curl(dapcomm->oc.conn);
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#endif
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nullfree(dapcomm->oc.urltext); /* clean up */
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dapcomm->oc.urltext = NULL;
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/* process control client parameters */
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applyclientparamcontrols(dapcomm);
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/* Turn on logging; only do this after oc_open*/
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if((value = dapparamvalue(dapcomm,"log")) != NULL) {
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ncloginit();
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if(nclogopen(value))
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ncsetlogging(1);
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ncloginit();
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if(nclogopen(value))
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ncsetlogging(1);
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}
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/* fetch and build the unconstrained DDS for use as
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pattern */
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ncstat = fetchpatternmetadata(dapcomm);
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if(ncstat != NC_NOERR) goto done;
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/* Operations on the pattern tree */
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/* Accumulate useful nodes sets */
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ncstat = computecdfnodesets(dapcomm,dapcomm->cdf.fullddsroot->tree);
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if(ncstat) {THROWCHK(ncstat); goto done;}
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/* Define the dimsettrans list */
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ncstat = definedimsettrans(dapcomm,dapcomm->cdf.fullddsroot->tree);
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if(ncstat) {THROWCHK(ncstat); goto done;}
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/* Mark the nodes of the pattern that are eligible for prefetch */
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ncstat = markprefetch(dapcomm);
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|
|
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/* fetch and build the constrained DDS */
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ncstat = fetchconstrainedmetadata(dapcomm);
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if(ncstat != NC_NOERR) goto done;
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|
|
|
#ifdef DEBUG2
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fprintf(stderr,"constrained dds: %s\n",dumptree(dapcomm->cdf.ddsroot));
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#endif
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|
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/* Operations on the constrained tree */
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/* Accumulate useful nodes sets */
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ncstat = computecdfnodesets(dapcomm,dapcomm->cdf.ddsroot->tree);
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if(ncstat) {THROWCHK(ncstat); goto done;}
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/* Fix grids */
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ncstat = fixgrids(dapcomm);
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if(ncstat) {THROWCHK(ncstat); goto done;}
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|
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/* Locate and mark usable sequences */
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ncstat = sequencecheck(dapcomm);
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if(ncstat) {THROWCHK(ncstat); goto done;}
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|
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/* suppress variables not in usable sequences */
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ncstat = suppressunusablevars(dapcomm);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* apply client parameters */
|
|
ncstat = applyclientparams(dapcomm);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* Add (as needed) string dimensions*/
|
|
ncstat = addstringdims(dapcomm);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
|
|
if(nclistlength(dapcomm->cdf.ddsroot->tree->seqnodes) > 0) {
|
|
/* Build the sequence related dimensions */
|
|
ncstat = defseqdims(dapcomm);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
}
|
|
|
|
/* Define the dimsetplus and dimsetall lists */
|
|
ncstat = definedimsets(dapcomm,dapcomm->cdf.ddsroot->tree);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* Re-compute the dimension names*/
|
|
ncstat = computecdfdimnames(dapcomm);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* Deal with zero size dimensions */
|
|
ncstat = fixzerodims(dapcomm);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* Attempt to use the DODS_EXTRA info to turn
|
|
one of the dimensions into unlimited.
|
|
Assume computecdfdimnames34 has already been called.
|
|
*/
|
|
ncstat = defrecorddim(dapcomm);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
if(dapcomm->cdf.recorddimname != NULL
|
|
&& nclistlength(dapcomm->cdf.ddsroot->tree->seqnodes) > 0) {
|
|
/*nclog(NCLOGWARN,"unlimited dimension specified, but sequences exist in DDS");*/
|
|
PANIC("unlimited dimension specified, but sequences exist in DDS");
|
|
}
|
|
|
|
/* Re-compute the var names*/
|
|
ncstat = computecdfvarnames(dapcomm,
|
|
dapcomm->cdf.ddsroot,
|
|
dapcomm->cdf.ddsroot->tree->varnodes);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* Transfer data from the unconstrained DDS data to the unconstrained DDS */
|
|
ncstat = dimimprint(dapcomm);
|
|
if(ncstat) goto done;
|
|
|
|
/* Process the constraints to map to the constrained CDF tree */
|
|
/* (must follow fixgrids3) */
|
|
ncstat = dapmapconstraints(dapcomm->oc.dapconstraint,dapcomm->cdf.ddsroot);
|
|
if(ncstat != NC_NOERR) goto done;
|
|
|
|
/* Canonicalize the constraint */
|
|
ncstat = dapfixprojections(dapcomm->oc.dapconstraint->projections);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* Fill in segment information */
|
|
ncstat = dapqualifyconstraints(dapcomm->oc.dapconstraint);
|
|
if(ncstat != NC_NOERR) goto done;
|
|
|
|
/* Accumulate set of variables in the constraint's projections */
|
|
ncstat = dapcomputeprojectedvars(dapcomm,dapcomm->oc.dapconstraint);
|
|
if(ncstat) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* using the modified constraint, rebuild the constraint string */
|
|
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE)) {
|
|
/* ignore all constraints */
|
|
dapcomm->oc.urltext = ncuribuild(dapcomm->oc.url,NULL,NULL,NCURIBASE);
|
|
} else {
|
|
char* constraintstring = dcebuildconstraintstring(dapcomm->oc.dapconstraint);
|
|
ncurisetquery(dapcomm->oc.url,constraintstring);
|
|
nullfree(constraintstring);
|
|
dapcomm->oc.urltext = ncuribuild(dapcomm->oc.url,NULL,NULL,NCURISVC);
|
|
}
|
|
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"ncdap3: final constraint: %s\n",dapcomm->oc.url->query);
|
|
#endif
|
|
|
|
/* Estimate the variable sizes */
|
|
estimatevarsizes(dapcomm);
|
|
|
|
/* Build the meta data */
|
|
ncstat = buildncstructures(dapcomm);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* Explicitly do not call enddef because it will complain
|
|
about variables that are too large.
|
|
*/
|
|
#if 0
|
|
ncstat = nc_endef(nc3id,NC_NOFILL,NULL);
|
|
if(ncstat != NC_NOERR && ncstat != NC_EVARSIZE)
|
|
{THROWCHK(ncstat); goto done;}
|
|
#endif
|
|
|
|
{ /* (for now) break abstractions*/
|
|
NC* ncsub;
|
|
NC3_INFO* nc3i;
|
|
CDFnode* unlimited = dapcomm->cdf.recorddim;
|
|
/* get the dispatch data for the substrate */
|
|
ncstat = NC_check_id(nc3id,&ncsub);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
|
|
nc3i = (NC3_INFO*)ncsub->dispatchdata;
|
|
/* This must be checked after all dds and data processing
|
|
so we can figure out the value of numrecs.
|
|
*/
|
|
if(unlimited != NULL) { /* Set the effective size of UNLIMITED */
|
|
NC_set_numrecs(nc3i,unlimited->dim.declsize);
|
|
}
|
|
/* Pretend the substrate is read-only */
|
|
NC_set_readonly(nc3i);
|
|
}
|
|
|
|
/* Do any necessary data prefetch */
|
|
if(FLAGSET(dapcomm->controls,NCF_PREFETCH)
|
|
&& FLAGSET(dapcomm->controls,NCF_PREFETCH_EAGER)) {
|
|
ncstat = prefetchdata(dapcomm);
|
|
if(ncstat != NC_NOERR) {
|
|
del_from_NCList((NC*)drno); /* undefine here */
|
|
{THROWCHK(ncstat); goto done;}
|
|
}
|
|
}
|
|
|
|
return ncstat;
|
|
|
|
done:
|
|
if(drno != NULL) NCD2_close(drno->ext_ncid,NULL);
|
|
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
int
|
|
NCD2_close(int ncid, void* ignore)
|
|
{
|
|
NC* drno;
|
|
NCDAPCOMMON* dapcomm;
|
|
int ncstatus = NC_NOERR;
|
|
|
|
ncstatus = NC_check_id(ncid, (NC**)&drno);
|
|
if(ncstatus != NC_NOERR) return THROW(ncstatus);
|
|
dapcomm = (NCDAPCOMMON*)drno->dispatchdata;
|
|
|
|
/* We call abort rather than close to avoid
|
|
trying to write anything or try to pad file length
|
|
*/
|
|
ncstatus = nc_abort(getnc3id(drno));
|
|
|
|
/* clean NC* */
|
|
freeNCDAPCOMMON(dapcomm);
|
|
|
|
return THROW(ncstatus);
|
|
}
|
|
|
|
/**************************************************/
|
|
|
|
static NCerror
|
|
buildncstructures(NCDAPCOMMON* dapcomm)
|
|
{
|
|
NCerror ncstat = NC_NOERR;
|
|
CDFnode* dds = dapcomm->cdf.ddsroot;
|
|
|
|
ncstat = buildglobalattrs(dapcomm,dds);
|
|
if(ncstat != NC_NOERR) goto done;
|
|
|
|
ncstat = builddims(dapcomm);
|
|
if(ncstat != NC_NOERR) goto done;
|
|
|
|
ncstat = buildvars(dapcomm);
|
|
if(ncstat != NC_NOERR) goto done;
|
|
|
|
done:
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
static NCerror
|
|
builddims(NCDAPCOMMON* dapcomm)
|
|
{
|
|
int i;
|
|
NCerror ncstat = NC_NOERR;
|
|
int dimid;
|
|
NClist* dimset = NULL;
|
|
NC* ncsub;
|
|
char* definename;
|
|
|
|
/* collect all dimensions from variables */
|
|
dimset = dapcomm->cdf.ddsroot->tree->dimnodes;
|
|
|
|
/* Sort by fullname just for the fun of it */
|
|
for(;;) {
|
|
int last = nclistlength(dimset) - 1;
|
|
int swap = 0;
|
|
for(i=0;i<last;i++) {
|
|
CDFnode* dim1 = (CDFnode*)nclistget(dimset,i);
|
|
CDFnode* dim2 = (CDFnode*)nclistget(dimset,i+1);
|
|
if(strcmp(dim1->ncfullname,dim2->ncfullname) > 0) {
|
|
nclistset(dimset,i,(void*)dim2);
|
|
nclistset(dimset,i+1,(void*)dim1);
|
|
swap = 1;
|
|
break;
|
|
}
|
|
}
|
|
if(!swap) break;
|
|
}
|
|
|
|
/* Define unlimited only if needed */
|
|
if(dapcomm->cdf.recorddim != NULL) {
|
|
CDFnode* unlimited = dapcomm->cdf.recorddim;
|
|
definename = getdefinename(unlimited);
|
|
ncstat = nc_def_dim(dapcomm->substrate.nc3id,
|
|
definename,
|
|
NC_UNLIMITED,
|
|
&unlimited->ncid);
|
|
nullfree(definename);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
|
|
|
|
/* get the id for the substrate */
|
|
ncstat = NC_check_id(dapcomm->substrate.nc3id,&ncsub);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
|
|
#if 0
|
|
nc3sub = (NC3_INFO*)&ncsub->dispatchdata;
|
|
/* Set the effective size of UNLIMITED;
|
|
note that this cannot easily be done through the normal API.*/
|
|
NC_set_numrecs(nc3sub,unlimited->dim.declsize);
|
|
#endif
|
|
|
|
}
|
|
|
|
for(i=0;i<nclistlength(dimset);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(dimset,i);
|
|
if(dim->dim.basedim != NULL) continue; /* handle below */
|
|
if(DIMFLAG(dim,CDFDIMRECORD)) continue; /* defined above */
|
|
#ifdef DEBUG1
|
|
fprintf(stderr,"define: dim: %s=%ld\n",dim->ncfullname,(long)dim->dim.declsize);
|
|
#endif
|
|
definename = getdefinename(dim);
|
|
ncstat = nc_def_dim(dapcomm->substrate.nc3id,definename,dim->dim.declsize,&dimid);
|
|
if(ncstat != NC_NOERR) {
|
|
THROWCHK(ncstat); nullfree(definename); goto done;
|
|
}
|
|
nullfree(definename);
|
|
dim->ncid = dimid;
|
|
}
|
|
|
|
/* Make all duplicate dims have same dimid as basedim*/
|
|
/* (see computecdfdimnames)*/
|
|
for(i=0;i<nclistlength(dimset);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(dimset,i);
|
|
if(dim->dim.basedim != NULL) {
|
|
dim->ncid = dim->dim.basedim->ncid;
|
|
}
|
|
}
|
|
done:
|
|
nclistfree(dimset);
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
/* Simultaneously build any associated attributes*/
|
|
/* and any necessary pseudo-dimensions for string types*/
|
|
static NCerror
|
|
buildvars(NCDAPCOMMON* dapcomm)
|
|
{
|
|
int i,j;
|
|
NCerror ncstat = NC_NOERR;
|
|
int varid;
|
|
NClist* varnodes = dapcomm->cdf.ddsroot->tree->varnodes;
|
|
char* definename;
|
|
|
|
ASSERT((varnodes != NULL));
|
|
for(i=0;i<nclistlength(varnodes);i++) {
|
|
CDFnode* var = (CDFnode*)nclistget(varnodes,i);
|
|
int dimids[NC_MAX_VAR_DIMS];
|
|
unsigned int ncrank;
|
|
NClist* vardims = NULL;
|
|
|
|
if(var->invisible) continue;
|
|
if(var->array.basevar != NULL) continue;
|
|
|
|
#ifdef DEBUG1
|
|
fprintf(stderr,"buildvars.candidate=|%s|\n",var->ncfullname);
|
|
#endif
|
|
|
|
vardims = var->array.dimsetall;
|
|
ncrank = nclistlength(vardims);
|
|
if(ncrank > 0) {
|
|
for(j=0;j<ncrank;j++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(vardims,j);
|
|
dimids[j] = dim->ncid;
|
|
}
|
|
}
|
|
definename = getdefinename(var);
|
|
|
|
#ifdef DEBUG1
|
|
fprintf(stderr,"define: var: %s/%s",
|
|
definename,var->ocname);
|
|
if(ncrank > 0) {
|
|
int k;
|
|
for(k=0;k<ncrank;k++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(vardims,k);
|
|
fprintf(stderr,"[%ld]",dim->dim.declsize);
|
|
}
|
|
}
|
|
fprintf(stderr,"\n");
|
|
#endif
|
|
ncstat = nc_def_var(dapcomm->substrate.nc3id,
|
|
definename,
|
|
var->externaltype,
|
|
ncrank,
|
|
(ncrank==0?NULL:dimids),
|
|
&varid);
|
|
nullfree(definename);
|
|
if(ncstat != NC_NOERR) {
|
|
THROWCHK(ncstat);
|
|
goto done;
|
|
}
|
|
var->ncid = varid;
|
|
if(var->attributes != NULL) {
|
|
for(j=0;j<nclistlength(var->attributes);j++) {
|
|
NCattribute* att = (NCattribute*)nclistget(var->attributes,j);
|
|
/* Check for _FillValue/Variable mismatch */
|
|
if(strcmp(att->name,"_FillValue")==0) {
|
|
if(att->etype != var->etype) {
|
|
/* Log a message */
|
|
nclog(NCLOGERR,"_FillValue/Variable type mismatch: variable=%s",var->ncbasename);
|
|
/* See if mismatch is allowed */
|
|
if(FLAGSET(dapcomm->controls,NCF_FILLMISMATCH)) {
|
|
/* Forcibly change the attribute type to match */
|
|
att->etype = var->etype;
|
|
} else {
|
|
ncstat = NC_EBADTYPE; /* fail */
|
|
goto done;
|
|
}
|
|
}
|
|
}
|
|
ncstat = buildattribute(dapcomm,var,att);
|
|
if(ncstat != NC_NOERR) goto done;
|
|
}
|
|
}
|
|
/* Tag the variable with its DAP path */
|
|
if(dapparamcheck(dapcomm,"show","projection"))
|
|
showprojection(dapcomm,var);
|
|
}
|
|
done:
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
static NCerror
|
|
buildglobalattrs(NCDAPCOMMON* dapcomm, CDFnode* root)
|
|
{
|
|
int i;
|
|
NCerror ncstat = NC_NOERR;
|
|
const char* txt;
|
|
char *nltxt, *p;
|
|
NCbytes* buf = NULL;
|
|
NClist* cdfnodes;
|
|
|
|
if(root->attributes != NULL) {
|
|
for(i=0;i<nclistlength(root->attributes);i++) {
|
|
NCattribute* att = (NCattribute*)nclistget(root->attributes,i);
|
|
ncstat = buildattribute(dapcomm,NULL,att);
|
|
if(ncstat != NC_NOERR) goto done;
|
|
}
|
|
}
|
|
|
|
/* Add global attribute identifying the sequence dimensions */
|
|
if(dapparamcheck(dapcomm,"show","seqdims")) {
|
|
buf = ncbytesnew();
|
|
cdfnodes = dapcomm->cdf.ddsroot->tree->nodes;
|
|
for(i=0;i<nclistlength(cdfnodes);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(cdfnodes,i);
|
|
if(dim->nctype != NC_Dimension) continue;
|
|
if(DIMFLAG(dim,CDFDIMSEQ)) {
|
|
char* cname = cdflegalname(dim->ocname);
|
|
if(ncbyteslength(buf) > 0) ncbytescat(buf,", ");
|
|
ncbytescat(buf,cname);
|
|
nullfree(cname);
|
|
}
|
|
}
|
|
if(ncbyteslength(buf) > 0) {
|
|
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_sequence_dimensions",
|
|
ncbyteslength(buf),ncbytescontents(buf));
|
|
}
|
|
}
|
|
|
|
/* Define some additional system global attributes
|
|
depending on show= clientparams*/
|
|
/* Ignore failures*/
|
|
|
|
if(dapparamcheck(dapcomm,"show","translate")) {
|
|
/* Add a global attribute to show the translation */
|
|
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_translate",
|
|
strlen("netcdf-3"),"netcdf-3");
|
|
}
|
|
if(dapparamcheck(dapcomm,"show","url")) {
|
|
if(dapcomm->oc.rawurltext != NULL)
|
|
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_url",
|
|
strlen(dapcomm->oc.rawurltext),dapcomm->oc.rawurltext);
|
|
}
|
|
if(dapparamcheck(dapcomm,"show","dds")) {
|
|
txt = NULL;
|
|
if(dapcomm->cdf.ddsroot != NULL)
|
|
txt = oc_tree_text(dapcomm->oc.conn,dapcomm->cdf.ddsroot->ocnode);
|
|
if(txt != NULL) {
|
|
/* replace newlines with spaces*/
|
|
nltxt = nulldup(txt);
|
|
for(p=nltxt;*p;p++) {if(*p == '\n' || *p == '\r' || *p == '\t') {*p = ' ';}};
|
|
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_dds",strlen(nltxt),nltxt);
|
|
nullfree(nltxt);
|
|
}
|
|
}
|
|
if(dapparamcheck(dapcomm,"show","das")) {
|
|
txt = NULL;
|
|
if(dapcomm->oc.ocdasroot != NULL)
|
|
txt = oc_tree_text(dapcomm->oc.conn,dapcomm->oc.ocdasroot);
|
|
if(txt != NULL) {
|
|
nltxt = nulldup(txt);
|
|
for(p=nltxt;*p;p++) {if(*p == '\n' || *p == '\r' || *p == '\t') {*p = ' ';}};
|
|
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_das",strlen(nltxt),nltxt);
|
|
nullfree(nltxt);
|
|
}
|
|
}
|
|
|
|
done:
|
|
ncbytesfree(buf);
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
static NCerror
|
|
buildattribute(NCDAPCOMMON* dapcomm, CDFnode* var, NCattribute* att)
|
|
{
|
|
int i;
|
|
NCerror ncstat = NC_NOERR;
|
|
unsigned int nvalues = nclistlength(att->values);
|
|
int varid = (var == NULL ? NC_GLOBAL : var->ncid);
|
|
void* mem = NULL;
|
|
|
|
/* If the type of the attribute is string, then we need*/
|
|
/* to convert to a single character string by concatenation.
|
|
modified: 10/23/09 to insert newlines.
|
|
modified: 10/28/09 to interpret escapes
|
|
*/
|
|
if(att->etype == NC_STRING || att->etype == NC_URL) {
|
|
char* newstring = NULL;
|
|
size_t newlen = 0;
|
|
for(i=0;i<nvalues;i++) {
|
|
char* s = (char*)nclistget(att->values,i);
|
|
newlen += (1+strlen(s));
|
|
}
|
|
newlen++; /* for strlcat nul */
|
|
newstring = (char*)malloc(newlen+1);
|
|
MEMCHECK(newstring,NC_ENOMEM);
|
|
newstring[0] = '\0';
|
|
for(i=0;i<nvalues;i++) {
|
|
char* s = (char*)nclistget(att->values,i);
|
|
if(i > 0) strlcat(newstring,"\n",newlen);
|
|
strlcat(newstring,s,newlen);
|
|
}
|
|
dapexpandescapes(newstring);
|
|
if(newstring[0]=='\0')
|
|
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,varid,att->name,1,newstring);
|
|
else
|
|
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,varid,att->name,strlen(newstring),newstring);
|
|
free(newstring);
|
|
if(ncstat) goto done;
|
|
} else {
|
|
nc_type atype;
|
|
unsigned int typesize;
|
|
atype = nctypeconvert(dapcomm,att->etype);
|
|
typesize = nctypesizeof(atype);
|
|
if (nvalues > 0) {
|
|
mem = malloc(typesize * nvalues);
|
|
}
|
|
ncstat = dapcvtattrval(atype,mem,att->values,att);
|
|
if(ncstat == NC_ERANGE)
|
|
nclog(NCLOGERR,"Attribute value out of range: %s:%s",
|
|
(var==NULL?"":var->ncbasename),att->name);
|
|
if(ncstat) goto done;
|
|
ncstat = nc_put_att(dapcomm->substrate.nc3id,varid,att->name,atype,nvalues,mem);
|
|
if(ncstat) goto done;
|
|
}
|
|
done:
|
|
if(mem) free(mem);
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
static char*
|
|
getdefinename(CDFnode* node)
|
|
{
|
|
char* spath = NULL;
|
|
NClist* path = NULL;
|
|
|
|
switch (node->nctype) {
|
|
case NC_Atomic:
|
|
/* The define name is same as the fullname with elided nodes */
|
|
path = nclistnew();
|
|
collectnodepath(node,path,!WITHDATASET);
|
|
spath = makepathstring(path,".",PATHNC|PATHELIDE);
|
|
nclistfree(path);
|
|
break;
|
|
|
|
case NC_Dimension:
|
|
/* Return just the node's ncname */
|
|
spath = nulldup(node->ncbasename);
|
|
break;
|
|
|
|
default:
|
|
PANIC("unexpected nctype");
|
|
}
|
|
return spath;
|
|
}
|
|
|
|
int
|
|
NCDAP2_ping(const char* url)
|
|
{
|
|
OCerror ocstat = OC_NOERR;
|
|
ocstat = oc_ping(url);
|
|
return ocerrtoncerr(ocstat);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_format_extended(int ncid, int* formatp, int* modep)
|
|
{
|
|
NC* nc;
|
|
int ncstatus = NC_check_id(ncid, (NC**)&nc);
|
|
if(ncstatus != NC_NOERR) return THROW(ncstatus);
|
|
if(modep) *modep = nc->mode;
|
|
if(formatp) *formatp = NC_FORMATX_DAP2;
|
|
return NC_NOERR;
|
|
}
|
|
|
|
/**************************************************/
|
|
/* Support functions */
|
|
|
|
/*
|
|
Provide short and/or unified names for dimensions.
|
|
This must mimic lib-ncdap, which is difficult.
|
|
*/
|
|
NCerror
|
|
computecdfdimnames(NCDAPCOMMON* nccomm)
|
|
{
|
|
int i,j;
|
|
char tmp[NC_MAX_NAME*2];
|
|
NClist* conflicts = nclistnew();
|
|
NClist* varnodes = nccomm->cdf.ddsroot->tree->varnodes;
|
|
NClist* alldims;
|
|
NClist* basedims;
|
|
|
|
/* Collect all dimension nodes from dimsetall lists */
|
|
|
|
alldims = getalldims(nccomm,0);
|
|
|
|
/* Assign an index to all anonymous dimensions
|
|
vis-a-vis its containing variable
|
|
*/
|
|
for(i=0;i<nclistlength(varnodes);i++) {
|
|
CDFnode* var = (CDFnode*)nclistget(varnodes,i);
|
|
for(j=0;j<nclistlength(var->array.dimsetall);j++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(var->array.dimsetall,j);
|
|
if(dim->ocname != NULL) continue; /* not anonymous */
|
|
computedimindexanon(dim,var);
|
|
}
|
|
}
|
|
|
|
/* Unify dimensions by defining one dimension as the "base"
|
|
dimension, and make all "equivalent" dimensions point to the
|
|
base dimension.
|
|
1. Equivalent means: same size and both have identical non-null names.
|
|
2. Dims with same name but different sizes will be handled separately
|
|
*/
|
|
for(i=0;i<nclistlength(alldims);i++) {
|
|
CDFnode* dupdim = NULL;
|
|
CDFnode* basedim = (CDFnode*)nclistget(alldims,i);
|
|
if(basedim == NULL) continue;
|
|
if(basedim->dim.basedim != NULL) continue; /* already processed*/
|
|
for(j=i+1;j<nclistlength(alldims);j++) { /* Sigh, n**2 */
|
|
dupdim = (CDFnode*)nclistget(alldims,j);
|
|
if(basedim == dupdim) continue;
|
|
if(dupdim == NULL) continue;
|
|
if(dupdim->dim.basedim != NULL) continue; /* already processed */
|
|
if(!equivalentdim(basedim,dupdim))
|
|
continue;
|
|
dupdim->dim.basedim = basedim; /* equate */
|
|
#ifdef DEBUG1
|
|
fprintf(stderr,"assign: %s/%s -> %s/%s\n",
|
|
basedim->dim.array->ocname,basedim->ocname,
|
|
dupdim->dim.array->ocname,dupdim->ocname
|
|
);
|
|
#endif
|
|
}
|
|
}
|
|
|
|
/* Next case: same name and different sizes*/
|
|
/* => rename second dim */
|
|
|
|
for(i=0;i<nclistlength(alldims);i++) {
|
|
CDFnode* basedim = (CDFnode*)nclistget(alldims,i);
|
|
if(basedim->dim.basedim != NULL) continue;
|
|
/* Collect all conflicting dimensions */
|
|
nclistclear(conflicts);
|
|
for(j=i+1;j<nclistlength(alldims);j++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(alldims,j);
|
|
if(dim->dim.basedim != NULL) continue;
|
|
if(dim->ocname == NULL && basedim->ocname == NULL) continue;
|
|
if(dim->ocname == NULL || basedim->ocname == NULL) continue;
|
|
if(strcmp(dim->ocname,basedim->ocname)!=0) continue;
|
|
if(dim->dim.declsize == basedim->dim.declsize) continue;
|
|
#ifdef DEBUG2
|
|
fprintf(stderr,"conflict: %s[%lu] %s[%lu]\n",
|
|
basedim->ncfullname,(unsigned long)basedim->dim.declsize,
|
|
dim->ncfullname,(unsigned long)dim->dim.declsize);
|
|
#endif
|
|
nclistpush(conflicts,(void*)dim);
|
|
}
|
|
/* Give all the conflicting dimensions an index */
|
|
for(j=0;j<nclistlength(conflicts);j++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(conflicts,j);
|
|
dim->dim.index1 = j+1;
|
|
}
|
|
}
|
|
nclistfree(conflicts);
|
|
|
|
/* Replace all non-base dimensions with their base dimension */
|
|
for(i=0;i<nclistlength(varnodes);i++) {
|
|
CDFnode* node = (CDFnode*)nclistget(varnodes,i);
|
|
replacedims(node->array.dimsetall);
|
|
replacedims(node->array.dimsetplus);
|
|
replacedims(node->array.dimset0);
|
|
}
|
|
|
|
/* Collect list of all basedims */
|
|
basedims = nclistnew();
|
|
for(i=0;i<nclistlength(alldims);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(alldims,i);
|
|
if(dim->dim.basedim == NULL) {
|
|
if(!nclistcontains(basedims,(void*)dim)) {
|
|
nclistpush(basedims,(void*)dim);
|
|
}
|
|
}
|
|
}
|
|
|
|
nccomm->cdf.ddsroot->tree->dimnodes = basedims;
|
|
|
|
/* cleanup */
|
|
nclistfree(alldims);
|
|
|
|
/* Assign ncbasenames and ncfullnames to base dimensions */
|
|
for(i=0;i<nclistlength(basedims);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(basedims,i);
|
|
CDFnode* var = dim->dim.array;
|
|
if(dim->dim.basedim != NULL) PANIC1("nonbase basedim: %s\n",dim->ocname);
|
|
/* stringdim names are already assigned */
|
|
if(dim->ocname == NULL) { /* anonymous: use the index to compute the name */
|
|
snprintf(tmp,sizeof(tmp),"%s_%d",
|
|
var->ncfullname,dim->dim.index1-1);
|
|
nullfree(dim->ncbasename);
|
|
dim->ncbasename = cdflegalname(tmp);
|
|
nullfree(dim->ncfullname);
|
|
dim->ncfullname = nulldup(dim->ncbasename);
|
|
} else { /* !anonymous; use index1 if defined */
|
|
char* legalname = cdflegalname(dim->ocname);
|
|
nullfree(dim->ncbasename);
|
|
if(dim->dim.index1 > 0) {/* need to fix conflicting names (see above) */
|
|
char sindex[64];
|
|
size_t baselen;
|
|
snprintf(sindex,sizeof(sindex),"_%d",dim->dim.index1);
|
|
baselen = strlen(sindex)+strlen(legalname);
|
|
baselen++; /* for strlcat nul */
|
|
dim->ncbasename = (char*)malloc(baselen+1);
|
|
if(dim->ncbasename == NULL) {nullfree(legalname); return NC_ENOMEM;}
|
|
strncpy(dim->ncbasename,legalname,baselen);
|
|
strlcat(dim->ncbasename,sindex,baselen);
|
|
nullfree(legalname);
|
|
} else {/* standard case */
|
|
dim->ncbasename = legalname;
|
|
}
|
|
nullfree(dim->ncfullname);
|
|
dim->ncfullname = nulldup(dim->ncbasename);
|
|
}
|
|
}
|
|
|
|
/* Verify unique and defined names for dimensions*/
|
|
for(i=0;i<nclistlength(basedims);i++) {
|
|
CDFnode* dim1 = (CDFnode*)nclistget(basedims,i);
|
|
CDFnode* dim2 = NULL;
|
|
if(dim1->dim.basedim != NULL) PANIC1("nonbase basedim: %s\n",dim1->ncbasename);
|
|
if(dim1->ncbasename == NULL || dim1->ncfullname == NULL)
|
|
PANIC1("missing dim names: %s",dim1->ocname);
|
|
/* search backward so we can delete duplicates */
|
|
for(j=nclistlength(basedims)-1;j>i;j--) {
|
|
if(!dim1->ncfullname) continue;
|
|
dim2 = (CDFnode*)nclistget(basedims,j);
|
|
if(strcmp(dim1->ncfullname,dim2->ncfullname)==0) {
|
|
/* complain and suppress one of them */
|
|
fprintf(stderr,"duplicate dim names: %s[%lu] %s[%lu]\n",
|
|
dim1->ncfullname,(unsigned long)dim1->dim.declsize,
|
|
dim2->ncfullname,(unsigned long)dim2->dim.declsize);
|
|
nclistremove(basedims,j);
|
|
}
|
|
}
|
|
}
|
|
|
|
#ifdef DEBUG
|
|
for(i=0;i<nclistlength(basedims);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(basedims,i);
|
|
fprintf(stderr,"basedim: %s=%ld\n",dim->ncfullname,(long)dim->dim.declsize);
|
|
}
|
|
#endif
|
|
|
|
return NC_NOERR;
|
|
}
|
|
|
|
int
|
|
constrainable(NCURI* durl)
|
|
{
|
|
char** protocol = constrainableprotocols;
|
|
for(;*protocol;protocol++) {
|
|
if(strcmp(durl->protocol,*protocol)==0)
|
|
return 1;
|
|
}
|
|
return 0;
|
|
}
|
|
|
|
/* Lookup a parameter key; case insensitive */
|
|
static const char*
|
|
paramlookup(NCDAPCOMMON* state, const char* key)
|
|
{
|
|
const char* value = NULL;
|
|
if(state == NULL || key == NULL || state->oc.url == NULL) return NULL;
|
|
value = ncurilookup(state->oc.url,key);
|
|
return value;
|
|
}
|
|
|
|
/* Note: this routine only applies some common
|
|
client parameters, other routines may apply
|
|
specific ones.
|
|
*/
|
|
|
|
static NCerror
|
|
applyclientparams(NCDAPCOMMON* nccomm)
|
|
{
|
|
int i,len;
|
|
int dfaltstrlen = DEFAULTSTRINGLENGTH;
|
|
int dfaltseqlim = DEFAULTSEQLIMIT;
|
|
const char* value;
|
|
char tmpname[NC_MAX_NAME+32];
|
|
char* pathstr = NULL;
|
|
OClink conn = nccomm->oc.conn;
|
|
unsigned long limit;
|
|
|
|
ASSERT(nccomm->oc.url != NULL);
|
|
|
|
nccomm->cdf.cache->cachelimit = DFALTCACHELIMIT;
|
|
value = paramlookup(nccomm,"cachelimit");
|
|
limit = getlimitnumber(value);
|
|
if(limit > 0) nccomm->cdf.cache->cachelimit = limit;
|
|
|
|
nccomm->cdf.fetchlimit = DFALTFETCHLIMIT;
|
|
value = paramlookup(nccomm,"fetchlimit");
|
|
limit = getlimitnumber(value);
|
|
if(limit > 0) nccomm->cdf.fetchlimit = limit;
|
|
|
|
nccomm->cdf.smallsizelimit = DFALTSMALLLIMIT;
|
|
value = paramlookup(nccomm,"smallsizelimit");
|
|
limit = getlimitnumber(value);
|
|
if(limit > 0) nccomm->cdf.smallsizelimit = limit;
|
|
|
|
nccomm->cdf.cache->cachecount = DFALTCACHECOUNT;
|
|
#ifdef HAVE_GETRLIMIT
|
|
{ struct rlimit rl;
|
|
if(getrlimit(RLIMIT_NOFILE, &rl) >= 0) {
|
|
nccomm->cdf.cache->cachecount = (size_t)(rl.rlim_cur / 2);
|
|
}
|
|
}
|
|
#endif
|
|
value = paramlookup(nccomm,"cachecount");
|
|
limit = getlimitnumber(value);
|
|
if(limit > 0) nccomm->cdf.cache->cachecount = limit;
|
|
/* Ignore limit if not caching */
|
|
if(!FLAGSET(nccomm->controls,NCF_CACHE))
|
|
nccomm->cdf.cache->cachecount = 0;
|
|
|
|
if(paramlookup(nccomm,"nolimit") != NULL)
|
|
dfaltseqlim = 0;
|
|
value = paramlookup(nccomm,"limit");
|
|
if(value != NULL && strlen(value) != 0) {
|
|
if(sscanf(value,"%d",&len) && len > 0) dfaltseqlim = len;
|
|
}
|
|
nccomm->cdf.defaultsequencelimit = dfaltseqlim;
|
|
|
|
/* allow embedded _ */
|
|
value = paramlookup(nccomm,"stringlength");
|
|
if(value == NULL)
|
|
value = paramlookup(nccomm,"maxstrlen");
|
|
if(value != NULL && strlen(value) != 0) {
|
|
if(sscanf(value,"%d",&len) && len > 0) dfaltstrlen = len;
|
|
}
|
|
nccomm->cdf.defaultstringlength = dfaltstrlen;
|
|
|
|
/* String dimension limits apply to variables */
|
|
for(i=0;i<nclistlength(nccomm->cdf.ddsroot->tree->varnodes);i++) {
|
|
CDFnode* var = (CDFnode*)nclistget(nccomm->cdf.ddsroot->tree->varnodes,i);
|
|
/* Define the client param stringlength/maxstrlen for this variable*/
|
|
/* create the variable path name */
|
|
var->maxstringlength = 0; /* => use global dfalt */
|
|
strncpy(tmpname,"stringlength_",sizeof(tmpname));
|
|
pathstr = makeocpathstring(conn,var->ocnode,".");
|
|
strlcat(tmpname,pathstr,sizeof(tmpname));
|
|
value = paramlookup(nccomm,tmpname);
|
|
if(value == NULL) {
|
|
strcpy(tmpname,"maxstrlen_");
|
|
strncat(tmpname,pathstr,NC_MAX_NAME);
|
|
value = paramlookup(nccomm,tmpname);
|
|
}
|
|
nullfree(pathstr);
|
|
if(value != NULL && strlen(value) != 0) {
|
|
if(sscanf(value,"%d",&len) && len > 0) var->maxstringlength = len;
|
|
}
|
|
}
|
|
/* Sequence limits apply to sequences */
|
|
for(i=0;i<nclistlength(nccomm->cdf.ddsroot->tree->nodes);i++) {
|
|
CDFnode* var = (CDFnode*)nclistget(nccomm->cdf.ddsroot->tree->nodes,i);
|
|
if(var->nctype != NC_Sequence) continue;
|
|
var->sequencelimit = dfaltseqlim;
|
|
strncpy(tmpname,"nolimit_",sizeof(tmpname));
|
|
pathstr = makeocpathstring(conn,var->ocnode,".");
|
|
strlcat(tmpname,pathstr,sizeof(tmpname));
|
|
if(paramlookup(nccomm,tmpname) != NULL)
|
|
var->sequencelimit = 0;
|
|
strncpy(tmpname,"limit_",sizeof(tmpname));
|
|
strlcat(tmpname,pathstr,sizeof(tmpname));
|
|
value = paramlookup(nccomm,tmpname);
|
|
if(value != NULL && strlen(value) != 0) {
|
|
if(sscanf(value,"%d",&len) && len > 0)
|
|
var->sequencelimit = len;
|
|
}
|
|
nullfree(pathstr);
|
|
}
|
|
|
|
/* test for the appropriate fetch flags */
|
|
value = paramlookup(nccomm,"fetch");
|
|
if(value != NULL && strlen(value) > 0) {
|
|
if(value[0] == 'd' || value[0] == 'D') {
|
|
SETFLAG(nccomm->controls,NCF_ONDISK);
|
|
}
|
|
}
|
|
|
|
/* test for the force-whole-var flag */
|
|
value = paramlookup(nccomm,"wholevar");
|
|
if(value != NULL) {
|
|
SETFLAG(nccomm->controls,NCF_WHOLEVAR);
|
|
}
|
|
|
|
return NC_NOERR;
|
|
}
|
|
|
|
/**
|
|
* Given an anonymous dimension, compute the
|
|
* effective 0-based index wrt to the specified var.
|
|
* The result should mimic the libnc-dap indices.
|
|
*/
|
|
|
|
static void
|
|
computedimindexanon(CDFnode* dim, CDFnode* var)
|
|
{
|
|
int i;
|
|
NClist* dimset = var->array.dimsetall;
|
|
for(i=0;i<nclistlength(dimset);i++) {
|
|
CDFnode* candidate = (CDFnode*)nclistget(dimset,i);
|
|
if(dim == candidate) {
|
|
dim->dim.index1=i+1;
|
|
return;
|
|
}
|
|
}
|
|
}
|
|
|
|
/* Replace dims in a list with their corresponding basedim */
|
|
static void
|
|
replacedims(NClist* dims)
|
|
{
|
|
int i;
|
|
for(i=0;i<nclistlength(dims);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(dims,i);
|
|
CDFnode* basedim = dim->dim.basedim;
|
|
if(basedim == NULL) continue;
|
|
nclistset(dims,i,(void*)basedim);
|
|
}
|
|
}
|
|
|
|
/**
|
|
Two dimensions are equivalent if
|
|
1. they have the same size
|
|
2. neither are anonymous
|
|
3. they ave the same names.
|
|
*/
|
|
static int
|
|
equivalentdim(CDFnode* basedim, CDFnode* dupdim)
|
|
{
|
|
if(dupdim->dim.declsize != basedim->dim.declsize) return 0;
|
|
if(basedim->ocname == NULL && dupdim->ocname == NULL) return 0;
|
|
if(basedim->ocname == NULL || dupdim->ocname == NULL) return 0;
|
|
if(strcmp(dupdim->ocname,basedim->ocname) != 0) return 0;
|
|
return 1;
|
|
}
|
|
|
|
static void
|
|
getalldimsa(NClist* dimset, NClist* alldims)
|
|
{
|
|
int i;
|
|
for(i=0;i<nclistlength(dimset);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(dimset,i);
|
|
if(!nclistcontains(alldims,(void*)dim)) {
|
|
#ifdef DEBUG3
|
|
fprintf(stderr,"getalldims: %s[%lu]\n",
|
|
dim->ncfullname,(unsigned long)dim->dim.declsize);
|
|
#endif
|
|
nclistpush(alldims,(void*)dim);
|
|
}
|
|
}
|
|
}
|
|
|
|
/* Accumulate a set of all the known dimensions
|
|
vis-a-vis defined variables
|
|
*/
|
|
NClist*
|
|
getalldims(NCDAPCOMMON* nccomm, int visibleonly)
|
|
{
|
|
int i;
|
|
NClist* alldims = nclistnew();
|
|
NClist* varnodes = nccomm->cdf.ddsroot->tree->varnodes;
|
|
|
|
/* get bag of all dimensions */
|
|
for(i=0;i<nclistlength(varnodes);i++) {
|
|
CDFnode* node = (CDFnode*)nclistget(varnodes,i);
|
|
if(!visibleonly || !node->invisible) {
|
|
getalldimsa(node->array.dimsetall,alldims);
|
|
}
|
|
}
|
|
return alldims;
|
|
}
|
|
|
|
|
|
static NCerror
|
|
addstringdims(NCDAPCOMMON* dapcomm)
|
|
{
|
|
/* for all variables of string type, we will need another dimension
|
|
to represent the string; Accumulate the needed sizes and create
|
|
the dimensions with a specific name: either as specified
|
|
in DODS{...} attribute set or defaulting to the variable name.
|
|
All such dimensions are global.
|
|
*/
|
|
int i;
|
|
NClist* varnodes = dapcomm->cdf.ddsroot->tree->varnodes;
|
|
CDFnode* globalsdim = NULL;
|
|
char dimname[4096];
|
|
size_t dimsize;
|
|
|
|
/* Start by creating the global string dimension */
|
|
snprintf(dimname,sizeof(dimname),"maxStrlen%lu",
|
|
(unsigned long)dapcomm->cdf.defaultstringlength);
|
|
globalsdim = makecdfnode(dapcomm, dimname, OC_Dimension, NULL,
|
|
dapcomm->cdf.ddsroot);
|
|
nclistpush(dapcomm->cdf.ddsroot->tree->nodes,(void*)globalsdim);
|
|
DIMFLAGSET(globalsdim,CDFDIMSTRING);
|
|
globalsdim->dim.declsize = dapcomm->cdf.defaultstringlength;
|
|
globalsdim->dim.declsize0 = globalsdim->dim.declsize;
|
|
globalsdim->dim.array = dapcomm->cdf.ddsroot;
|
|
globalsdim->ncbasename = cdflegalname(dimname);
|
|
globalsdim->ncfullname = nulldup(globalsdim->ncbasename);
|
|
dapcomm->cdf.globalstringdim = globalsdim;
|
|
|
|
for(i=0;i<nclistlength(varnodes);i++) {
|
|
CDFnode* var = (CDFnode*)nclistget(varnodes,i);
|
|
CDFnode* sdim = NULL;
|
|
|
|
/* Does this node need a string dim? */
|
|
if(var->etype != NC_STRING && var->etype != NC_URL) continue;
|
|
|
|
dimsize = 0;
|
|
if(var->dodsspecial.maxstrlen > 0)
|
|
dimsize = var->dodsspecial.maxstrlen;
|
|
else
|
|
dimsize = var->maxstringlength;
|
|
|
|
/* check is a variable-specific string length was specified */
|
|
if(dimsize == 0)
|
|
sdim = dapcomm->cdf.globalstringdim; /* use default */
|
|
else {
|
|
/* create a pseudo dimension for the charification of the string*/
|
|
if(var->dodsspecial.dimname != NULL) {
|
|
strncpy(dimname,var->dodsspecial.dimname,sizeof(dimname));
|
|
dimname[sizeof(dimname)-1] = '\0';
|
|
} else
|
|
snprintf(dimname,sizeof(dimname),"maxStrlen%lu",
|
|
(unsigned long)dimsize);
|
|
sdim = makecdfnode(dapcomm, dimname, OC_Dimension, NULL,
|
|
dapcomm->cdf.ddsroot);
|
|
if(sdim == NULL) return THROW(NC_ENOMEM);
|
|
nclistpush(dapcomm->cdf.ddsroot->tree->nodes,(void*)sdim);
|
|
DIMFLAGSET(sdim,CDFDIMSTRING);
|
|
sdim->dim.declsize = dimsize;
|
|
sdim->dim.declsize0 = dimsize;
|
|
sdim->dim.array = var;
|
|
sdim->ncbasename = cdflegalname(sdim->ocname);
|
|
sdim->ncfullname = nulldup(sdim->ncbasename);
|
|
}
|
|
/* tag the variable with its string dimension*/
|
|
var->array.stringdim = sdim;
|
|
}
|
|
return NC_NOERR;
|
|
}
|
|
|
|
static NCerror
|
|
defrecorddim(NCDAPCOMMON* dapcomm)
|
|
{
|
|
unsigned int i;
|
|
NCerror ncstat = NC_NOERR;
|
|
NClist* basedims;
|
|
|
|
if(dapcomm->cdf.recorddimname == NULL) return NC_NOERR; /* ignore */
|
|
/* Locate the base dimension matching the record dim */
|
|
basedims = dapcomm->cdf.ddsroot->tree->dimnodes;
|
|
for(i=0;i<nclistlength(basedims);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(basedims,i);
|
|
if(strcmp(dim->ocname,dapcomm->cdf.recorddimname) != 0) continue;
|
|
DIMFLAGSET(dim,CDFDIMRECORD);
|
|
dapcomm->cdf.recorddim = dim;
|
|
break;
|
|
}
|
|
|
|
return ncstat;
|
|
}
|
|
|
|
static NCerror
|
|
defseqdims(NCDAPCOMMON* dapcomm)
|
|
{
|
|
unsigned int i = 0;
|
|
NCerror ncstat = NC_NOERR;
|
|
int seqdims = 1; /* default is to compute seq dims counts */
|
|
|
|
/* Does the user want to compute actual sequence sizes? */
|
|
if(dapparamvalue(dapcomm,"noseqdims")) seqdims = 0;
|
|
|
|
/*
|
|
Compute and define pseudo dimensions for sequences
|
|
meeting the following qualifications:
|
|
1. all parents (transitively) of the sequence must
|
|
be either a dataset or a scalar structure.
|
|
2. it must be possible to find a usable sequence constraint.
|
|
All other sequences will be ignored.
|
|
*/
|
|
|
|
for(i=0;i<nclistlength(dapcomm->cdf.ddsroot->tree->seqnodes);i++) {
|
|
CDFnode* seq = (CDFnode*)nclistget(dapcomm->cdf.ddsroot->tree->seqnodes,i);
|
|
size_t seqsize = 0;
|
|
CDFnode* sqdim = NULL;
|
|
CDFnode* container;
|
|
/* Does this sequence match the requirements for use ? */
|
|
seq->usesequence = 1; /* assume */
|
|
for(container=seq->container;container != NULL;container=container->container) {
|
|
if(container->nctype == NC_Dataset) break;
|
|
if(container->nctype != NC_Structure
|
|
|| nclistlength(container->array.dimset0) > 0)
|
|
{seq->usesequence = 0; break;}/* no good */
|
|
}
|
|
/* Does the user want us to compute the actual sequence dim size? */
|
|
if(seq->usesequence && seqdims) {
|
|
ncstat = getseqdimsize(dapcomm,seq,&seqsize);
|
|
if(ncstat != NC_NOERR) {
|
|
/* Cannot read sequence; mark as unusable */
|
|
seq->usesequence = 0;
|
|
}
|
|
} else { /* !seqdims default to size = 1 */
|
|
seqsize = 1;
|
|
}
|
|
if(seq->usesequence) {
|
|
/* Note: we are making the dimension in the dds root tree */
|
|
ncstat = makeseqdim(dapcomm,seq,seqsize,&sqdim);
|
|
if(ncstat) goto fail;
|
|
seq->array.seqdim = sqdim;
|
|
} else
|
|
seq->array.seqdim = NULL;
|
|
}
|
|
|
|
fail:
|
|
return ncstat;
|
|
}
|
|
|
|
static NCerror
|
|
showprojection(NCDAPCOMMON* dapcomm, CDFnode* var)
|
|
{
|
|
int i,rank;
|
|
NCerror ncstat = NC_NOERR;
|
|
NCbytes* projection = ncbytesnew();
|
|
NClist* path = nclistnew();
|
|
NC* drno = dapcomm->controller;
|
|
|
|
/* Collect the set of DDS node name forming the xpath */
|
|
collectnodepath(var,path,WITHOUTDATASET);
|
|
for(i=0;i<nclistlength(path);i++) {
|
|
CDFnode* node = (CDFnode*)nclistget(path,i);
|
|
if(i > 0) ncbytescat(projection,".");
|
|
ncbytescat(projection,node->ocname);
|
|
}
|
|
nclistfree(path);
|
|
/* Now, add the dimension info */
|
|
rank = nclistlength(var->array.dimset0);
|
|
for(i=0;i<rank;i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(var->array.dimset0,i);
|
|
char tmp[32];
|
|
ncbytescat(projection,"[");
|
|
snprintf(tmp,sizeof(tmp),"%lu",(unsigned long)dim->dim.declsize);
|
|
ncbytescat(projection,tmp);
|
|
ncbytescat(projection,"]");
|
|
}
|
|
/* Define the attribute */
|
|
ncstat = nc_put_att_text(getncid(drno),var->ncid,
|
|
"_projection",
|
|
ncbyteslength(projection),
|
|
ncbytescontents(projection));
|
|
ncbytesfree(projection);
|
|
return ncstat;
|
|
}
|
|
|
|
static NCerror
|
|
getseqdimsize(NCDAPCOMMON* dapcomm, CDFnode* seq, size_t* sizep)
|
|
{
|
|
NCerror ncstat = NC_NOERR;
|
|
OCerror ocstat = OC_NOERR;
|
|
OClink conn = dapcomm->oc.conn;
|
|
OCdatanode rootcontent = NULL;
|
|
OCddsnode ocroot;
|
|
CDFnode* dxdroot;
|
|
CDFnode* xseq;
|
|
NCbytes* seqcountconstraints = ncbytesnew();
|
|
size_t seqsize = 0;
|
|
|
|
/* Read the minimal amount of data in order to get the count */
|
|
/* If the url is unconstrainable, then get the whole thing */
|
|
computeseqcountconstraints(dapcomm,seq,seqcountconstraints);
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"seqcountconstraints: %s\n",ncbytescontents(seqcountconstraints));
|
|
#endif
|
|
|
|
/* Fetch the minimal data */
|
|
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE))
|
|
ncstat = dap_fetch(dapcomm,conn,NULL,OCDATADDS,&ocroot);
|
|
else
|
|
ncstat = dap_fetch(dapcomm,conn,ncbytescontents(seqcountconstraints),OCDATADDS,&ocroot);
|
|
if(ncstat) goto fail;
|
|
|
|
ncstat = buildcdftree(dapcomm,ocroot,OCDATA,&dxdroot);
|
|
if(ncstat) goto fail;
|
|
/* attach DATADDS to DDS */
|
|
ncstat = attach(dxdroot,seq);
|
|
if(ncstat) goto fail;
|
|
|
|
/* WARNING: we are now switching to datadds tree */
|
|
xseq = seq->attachment;
|
|
ncstat = countsequence(dapcomm,xseq,&seqsize);
|
|
if(ncstat != NC_NOERR) goto fail;
|
|
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"sequencesize: %s = %lu\n",seq->ocname,(unsigned long)seqsize);
|
|
#endif
|
|
|
|
/* throw away the fetch'd trees */
|
|
unattach(dapcomm->cdf.ddsroot);
|
|
freecdfroot(dxdroot);
|
|
#if 1
|
|
/*Note sure what this is doing?*/
|
|
if(ncstat != NC_NOERR) {
|
|
/* Cannot get DATADDDS*/
|
|
char* code;
|
|
char* msg;
|
|
long httperr;
|
|
oc_svcerrordata(dapcomm->oc.conn,&code,&msg,&httperr);
|
|
if(code != NULL) {
|
|
nclog(NCLOGERR,"oc_fetch_datadds failed: %s %s %l",
|
|
code,msg,httperr);
|
|
}
|
|
ocstat = OC_NOERR;
|
|
}
|
|
#endif
|
|
|
|
if(sizep) *sizep = seqsize;
|
|
|
|
fail:
|
|
ncbytesfree(seqcountconstraints);
|
|
oc_data_free(conn,rootcontent);
|
|
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
|
|
return ncstat;
|
|
}
|
|
|
|
static NCerror
|
|
makeseqdim(NCDAPCOMMON* dapcomm, CDFnode* seq, size_t count, CDFnode** sqdimp)
|
|
{
|
|
CDFnode* sqdim;
|
|
CDFnode* root = seq->root;
|
|
CDFtree* tree = root->tree;
|
|
|
|
/* build the dimension with given size; keep the dimension anonymous */
|
|
sqdim = makecdfnode(dapcomm,seq->ocname,OC_Dimension,NULL,root);
|
|
if(sqdim == NULL) return THROW(NC_ENOMEM);
|
|
nclistpush(tree->nodes,(void*)sqdim);
|
|
/* Assign a name to the sequence node */
|
|
sqdim->ncbasename = cdflegalname(seq->ocname);
|
|
sqdim->ncfullname = nulldup(sqdim->ncbasename);
|
|
DIMFLAGSET(sqdim,CDFDIMSEQ);
|
|
sqdim->dim.declsize = count;
|
|
sqdim->dim.declsize0 = count;
|
|
sqdim->dim.array = seq;
|
|
if(sqdimp) *sqdimp = sqdim;
|
|
return NC_NOERR;
|
|
}
|
|
|
|
static NCerror
|
|
countsequence(NCDAPCOMMON* dapcomm, CDFnode* xseq, size_t* sizep)
|
|
{
|
|
unsigned int i;
|
|
NClist* path = nclistnew();
|
|
int index;
|
|
OCerror ocstat = OC_NOERR;
|
|
NCerror ncstat = NC_NOERR;
|
|
OClink conn = dapcomm->oc.conn;
|
|
size_t recordcount;
|
|
CDFnode* xroot;
|
|
OCdatanode data = NULL;
|
|
|
|
ASSERT((xseq->nctype == NC_Sequence));
|
|
|
|
/* collect the path to the sequence node */
|
|
collectnodepath(xseq,path,WITHDATASET);
|
|
|
|
/* Get tree root */
|
|
ASSERT(xseq->root == (CDFnode*)nclistget(path,0));
|
|
xroot = xseq->root;
|
|
ocstat = oc_data_getroot(conn,xroot->tree->ocroot,&data);
|
|
if(ocstat) goto done;
|
|
|
|
/* Basically we use the path to walk the data instances to reach
|
|
the sequence instance
|
|
*/
|
|
for(i=0;i<nclistlength(path);i++) {
|
|
CDFnode* current = (CDFnode*)nclistget(path,i);
|
|
OCdatanode nextdata = NULL;
|
|
CDFnode* next = NULL;
|
|
|
|
/* invariant: current = ith node in path; data = corresponding
|
|
datanode
|
|
*/
|
|
|
|
/* get next node in next and next instance in nextdata */
|
|
if(current->nctype == NC_Structure
|
|
|| current->nctype == NC_Dataset) {
|
|
if(nclistlength(current->array.dimset0) > 0) {
|
|
/* Cannot handle this case */
|
|
ncstat = THROW(NC_EDDS);
|
|
goto done;
|
|
}
|
|
/* get next node in path; structure/dataset => exists */
|
|
next = (CDFnode*)nclistget(path,i+1);
|
|
index = fieldindex(current,next);
|
|
/* Move to appropriate field */
|
|
ocstat = oc_data_ithfield(conn,data,index,&nextdata);
|
|
if(ocstat) goto done;
|
|
oc_data_free(conn,data);
|
|
data = nextdata; /* set up for next loop iteration */
|
|
} else if(current->nctype == NC_Sequence) {
|
|
/* Check for nested Sequences */
|
|
if(current != xseq) {
|
|
/* Cannot handle this case */
|
|
ncstat = THROW(NC_EDDS);
|
|
goto done;
|
|
}
|
|
/* Get the record count */
|
|
ocstat = oc_data_recordcount(conn,data,&recordcount);
|
|
if(sizep) *sizep = recordcount;
|
|
oc_data_free(conn,data); /* reclaim */
|
|
break; /* leave the loop */
|
|
} else {
|
|
PANIC("unexpected mode");
|
|
return NC_EINVAL;
|
|
}
|
|
}
|
|
|
|
done:
|
|
nclistfree(path);
|
|
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
|
|
return THROW(ncstat);
|
|
}
|
|
|
|
static NCerror
|
|
freeNCDAPCOMMON(NCDAPCOMMON* dapcomm)
|
|
{
|
|
if(dapcomm == NULL) return NC_NOERR;
|
|
freenccache(dapcomm,dapcomm->cdf.cache);
|
|
nclistfree(dapcomm->cdf.projectedvars);
|
|
nullfree(dapcomm->cdf.recorddimname);
|
|
|
|
/* free the trees */
|
|
freecdfroot(dapcomm->cdf.ddsroot);
|
|
dapcomm->cdf.ddsroot = NULL;
|
|
freecdfroot(dapcomm->cdf.fullddsroot);
|
|
dapcomm->cdf.fullddsroot = NULL;
|
|
if(dapcomm->oc.ocdasroot != NULL)
|
|
oc_root_free(dapcomm->oc.conn,dapcomm->oc.ocdasroot);
|
|
dapcomm->oc.ocdasroot = NULL;
|
|
oc_close(dapcomm->oc.conn); /* also reclaims remaining OC trees */
|
|
ncurifree(dapcomm->oc.url);
|
|
nullfree(dapcomm->oc.urltext);
|
|
nullfree(dapcomm->oc.rawurltext);
|
|
|
|
dcefree((DCEnode*)dapcomm->oc.dapconstraint);
|
|
dapcomm->oc.dapconstraint = NULL;
|
|
|
|
/* Note that the ncio layer will figure out that the tmp file needs to be deleted,
|
|
so we do not have to do it.
|
|
*/
|
|
nullfree(dapcomm->substrate.filename); /* always reclaim */
|
|
|
|
free(dapcomm);
|
|
|
|
return NC_NOERR;
|
|
}
|
|
|
|
static size_t
|
|
fieldindex(CDFnode* parent, CDFnode* child)
|
|
{
|
|
unsigned int i;
|
|
for(i=0;i<nclistlength(parent->subnodes);i++) {
|
|
CDFnode* node = (CDFnode*)nclistget(parent->subnodes,i);
|
|
if(node == child) return i;
|
|
}
|
|
return -1;
|
|
}
|
|
|
|
/*
|
|
This is more complex than one might think. We want to find
|
|
a path to a variable inside the given node so that we can
|
|
ask for a single instance of that variable to minimize the
|
|
amount of data we retrieve. However, we want to avoid passing
|
|
through any nested sequence. This is possible because of the way
|
|
that sequencecheck() works.
|
|
TODO: some servers will not accept an unconstrained fetch, so
|
|
make sure we always have a constraint.
|
|
*/
|
|
|
|
static NCerror
|
|
computeseqcountconstraints(NCDAPCOMMON* dapcomm, CDFnode* seq, NCbytes* seqcountconstraints)
|
|
{
|
|
int i,j;
|
|
NClist* path = NULL;
|
|
CDFnode* var = NULL;
|
|
|
|
ASSERT(seq->nctype == NC_Sequence);
|
|
computeseqcountconstraintsr(dapcomm,seq,&var);
|
|
|
|
ASSERT((var != NULL));
|
|
|
|
/* Compute var path */
|
|
path = nclistnew();
|
|
collectnodepath(var,path,WITHOUTDATASET);
|
|
|
|
/* construct the projection path using minimal index values */
|
|
for(i=0;i<nclistlength(path);i++) {
|
|
CDFnode* node = (CDFnode*)nclistget(path,i);
|
|
if(i > 0) ncbytescat(seqcountconstraints,".");
|
|
ncbytescat(seqcountconstraints,node->ocname);
|
|
if(node == seq) {
|
|
/* Use the limit */
|
|
if(node->sequencelimit > 0) {
|
|
char tmp[64];
|
|
snprintf(tmp,sizeof(tmp),"[0:%lu]",
|
|
(unsigned long)(node->sequencelimit - 1));
|
|
ncbytescat(seqcountconstraints,tmp);
|
|
}
|
|
} else if(nclistlength(node->array.dimset0) > 0) {
|
|
int ndims = nclistlength(node->array.dimset0);
|
|
for(j=0;j<ndims;j++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(node->array.dimset0,j);
|
|
if(DIMFLAG(dim,CDFDIMSTRING)) {
|
|
ASSERT((j == (ndims - 1)));
|
|
break;
|
|
}
|
|
ncbytescat(seqcountconstraints,"[0]");
|
|
}
|
|
}
|
|
}
|
|
/* Finally, add in any selection from the original URL */
|
|
if(dap_getselection(dapcomm->oc.url) != NULL)
|
|
ncbytescat(seqcountconstraints,dap_getselection(dapcomm->oc.url));
|
|
nclistfree(path);
|
|
return NC_NOERR;
|
|
}
|
|
|
|
|
|
/* Given an existing candidate, see if we prefer newchoice */
|
|
static CDFnode*
|
|
prefer(CDFnode* candidate, CDFnode* newchoice)
|
|
{
|
|
nc_type newtyp;
|
|
nc_type cantyp;
|
|
int newisstring;
|
|
int canisstring;
|
|
int newisscalar;
|
|
int canisscalar;
|
|
|
|
/* always choose !null over null */
|
|
if(newchoice == NULL)
|
|
return candidate;
|
|
if(candidate == NULL)
|
|
return newchoice;
|
|
|
|
newtyp = newchoice->etype;
|
|
cantyp = candidate->etype;
|
|
newisstring = (newtyp == NC_STRING || newtyp == NC_URL);
|
|
canisstring = (cantyp == NC_STRING || cantyp == NC_URL);
|
|
newisscalar = (nclistlength(newchoice->array.dimset0) == 0);
|
|
canisscalar = (nclistlength(candidate->array.dimset0) == 0);
|
|
|
|
ASSERT(candidate->nctype == NC_Atomic && newchoice->nctype == NC_Atomic);
|
|
|
|
/* choose non-string over string */
|
|
if(canisstring && !newisstring)
|
|
return newchoice;
|
|
if(!canisstring && newisstring)
|
|
return candidate;
|
|
|
|
/* choose scalar over array */
|
|
if(canisscalar && !newisscalar)
|
|
return candidate;
|
|
if(!canisscalar && newisscalar)
|
|
return candidate;
|
|
|
|
/* otherwise choose existing candidate */
|
|
return candidate;
|
|
}
|
|
|
|
/* computeseqcountconstraints recursive helper function */
|
|
static void
|
|
computeseqcountconstraintsr(NCDAPCOMMON* dapcomm, CDFnode* node, CDFnode** candidatep)
|
|
{
|
|
CDFnode* candidate;
|
|
CDFnode* compound;
|
|
unsigned int i;
|
|
|
|
candidate = NULL;
|
|
compound = NULL;
|
|
if(node == NULL)
|
|
return;
|
|
for(i=0;i<nclistlength(node->subnodes);i++) {
|
|
CDFnode* subnode = (CDFnode*)nclistget(node->subnodes,i);
|
|
if(subnode->nctype == NC_Structure || subnode->nctype == NC_Grid)
|
|
compound = subnode; /* save for later recursion */
|
|
else if(subnode->nctype == NC_Atomic)
|
|
candidate = prefer(candidate,subnode);
|
|
}
|
|
if(candidate == NULL && compound == NULL) {
|
|
PANIC("cannot find candidate for seqcountconstraints for a sequence");
|
|
} else if(candidate != NULL && candidatep != NULL) {
|
|
*candidatep = candidate;
|
|
} else { /* compound != NULL by construction */
|
|
/* recurse on a nested grids or strucures */
|
|
computeseqcountconstraintsr(dapcomm,compound,candidatep);
|
|
}
|
|
}
|
|
|
|
|
|
static unsigned long
|
|
cdftotalsize(NClist* dimensions)
|
|
{
|
|
unsigned int i;
|
|
unsigned long total = 1;
|
|
if(dimensions != NULL) {
|
|
for(i=0;i<nclistlength(dimensions);i++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(dimensions,i);
|
|
total *= dim->dim.declsize;
|
|
}
|
|
}
|
|
return total;
|
|
}
|
|
|
|
/* Estimate variables sizes and then resort the variable list
|
|
by that size
|
|
*/
|
|
static void
|
|
estimatevarsizes(NCDAPCOMMON* dapcomm)
|
|
{
|
|
int ivar;
|
|
unsigned int rank;
|
|
size_t totalsize = 0;
|
|
|
|
for(ivar=0;ivar<nclistlength(dapcomm->cdf.ddsroot->tree->varnodes);ivar++) {
|
|
CDFnode* var = (CDFnode*)nclistget(dapcomm->cdf.ddsroot->tree->varnodes,ivar);
|
|
NClist* ncdims = var->array.dimset0;
|
|
rank = nclistlength(ncdims);
|
|
if(rank == 0) { /* use instance size of the type */
|
|
var->estimatedsize = nctypesizeof(var->etype);
|
|
#ifdef DEBUG1
|
|
fprintf(stderr,"scalar %s.estimatedsize = %lu\n",
|
|
makecdfpathstring(var,"."),var->estimatedsize);
|
|
#endif
|
|
} else {
|
|
unsigned long size = cdftotalsize(ncdims);
|
|
size *= nctypesizeof(var->etype);
|
|
#ifdef DEBUG1
|
|
fprintf(stderr,"array %s(%u).estimatedsize = %lu\n",
|
|
makecdfpathstring(var,"."),rank,size);
|
|
#endif
|
|
var->estimatedsize = size;
|
|
}
|
|
totalsize += var->estimatedsize;
|
|
}
|
|
#ifdef DEBUG1
|
|
fprintf(stderr,"total estimatedsize = %lu\n",totalsize);
|
|
#endif
|
|
dapcomm->cdf.totalestimatedsize = totalsize;
|
|
}
|
|
|
|
static NCerror
|
|
fetchpatternmetadata(NCDAPCOMMON* dapcomm)
|
|
{
|
|
NCerror ncstat = NC_NOERR;
|
|
OCerror ocstat = OC_NOERR;
|
|
OCddsnode ocroot = NULL;
|
|
CDFnode* ddsroot = NULL;
|
|
char* ce = NULL;
|
|
|
|
/* Temporary hack: we need to get the selection string
|
|
from the url
|
|
*/
|
|
/* Get (almost) unconstrained DDS; In order to handle functions
|
|
correctly, those selections must always be included
|
|
*/
|
|
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE))
|
|
ce = NULL;
|
|
else
|
|
ce = nulldup(dap_getselection(dapcomm->oc.url));
|
|
|
|
/* Get selection constrained DDS */
|
|
ncstat = dap_fetch(dapcomm,dapcomm->oc.conn,ce,OCDDS,&ocroot);
|
|
if(ncstat != NC_NOERR) {
|
|
/* Special Hack. If the protocol is file, then see if
|
|
we can get the dds from the .dods file
|
|
*/
|
|
if(strcmp(dapcomm->oc.url->protocol,"file") != 0) {
|
|
THROWCHK(ocstat); goto done;
|
|
}
|
|
/* Fetch the data dds */
|
|
ncstat = dap_fetch(dapcomm,dapcomm->oc.conn,ce,OCDATADDS,&ocroot);
|
|
if(ncstat != NC_NOERR) {
|
|
THROWCHK(ncstat); goto done;
|
|
}
|
|
/* Note what we did */
|
|
nclog(NCLOGWARN,"Cannot locate .dds file, using .dods file");
|
|
}
|
|
|
|
/* Get selection constrained DAS */
|
|
ncstat = dap_fetch(dapcomm,dapcomm->oc.conn,ce,OCDAS,&dapcomm->oc.ocdasroot);
|
|
if(ncstat != NC_NOERR) {
|
|
/* Ignore but complain */
|
|
nclog(NCLOGWARN,"Could not read DAS; ignored");
|
|
dapcomm->oc.ocdasroot = NULL;
|
|
ncstat = NC_NOERR;
|
|
}
|
|
|
|
/* Construct the netcdf cdf tree corresponding to the dds tree*/
|
|
ncstat = buildcdftree(dapcomm,ocroot,OCDDS,&ddsroot);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
|
|
dapcomm->cdf.fullddsroot = ddsroot;
|
|
ddsroot = NULL; /* avoid double reclaim */
|
|
|
|
/* Combine DDS and DAS */
|
|
if(dapcomm->oc.ocdasroot != NULL) {
|
|
ncstat = dapmerge(dapcomm,dapcomm->cdf.fullddsroot,
|
|
dapcomm->oc.ocdasroot);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
|
|
}
|
|
|
|
#ifdef DEBUG2
|
|
fprintf(stderr,"full pattern:\n%s",dumptree(dapcomm->cdf.fullddsroot));
|
|
#endif
|
|
|
|
done:
|
|
nullfree(ce);
|
|
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
|
|
return ncstat;
|
|
}
|
|
|
|
static NCerror
|
|
fetchconstrainedmetadata(NCDAPCOMMON* dapcomm)
|
|
{
|
|
NCerror ncstat = NC_NOERR;
|
|
OCerror ocstat = OC_NOERR;
|
|
OCddsnode ocroot;
|
|
CDFnode* ddsroot; /* constrained */
|
|
char* ce = NULL;
|
|
|
|
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE))
|
|
ce = NULL;
|
|
else
|
|
ce = dcebuildconstraintstring(dapcomm->oc.dapconstraint);
|
|
{
|
|
ncstat = dap_fetch(dapcomm,dapcomm->oc.conn,ce,OCDDS,&ocroot);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
|
|
/* Construct our parallel dds tree; including attributes*/
|
|
ncstat = buildcdftree(dapcomm,ocroot,OCDDS,&ddsroot);
|
|
if(ncstat) goto fail;
|
|
ocroot = NULL; /* avoid duplicate reclaim */
|
|
|
|
dapcomm->cdf.ddsroot = ddsroot;
|
|
ddsroot = NULL; /* to avoid double reclamation */
|
|
|
|
if(!FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE)) {
|
|
/* fix DAP server problem by adding back any inserting needed structure nodes */
|
|
ncstat = restruct(dapcomm, dapcomm->cdf.ddsroot,dapcomm->cdf.fullddsroot,dapcomm->oc.dapconstraint->projections);
|
|
if(ncstat) goto fail;
|
|
}
|
|
|
|
#ifdef DEBUG2
|
|
fprintf(stderr,"constrained:\n%s",dumptree(dapcomm->cdf.ddsroot));
|
|
#endif
|
|
|
|
/* Combine DDS and DAS */
|
|
if(dapcomm->oc.ocdasroot != NULL) {
|
|
ncstat = dapmerge(dapcomm,dapcomm->cdf.ddsroot,
|
|
dapcomm->oc.ocdasroot);
|
|
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
|
|
}
|
|
/* map the constrained DDS to the unconstrained DDS */
|
|
ncstat = mapnodes(dapcomm->cdf.ddsroot,dapcomm->cdf.fullddsroot);
|
|
if(ncstat) goto fail;
|
|
|
|
}
|
|
|
|
fail:
|
|
nullfree(ce);
|
|
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
|
|
return ncstat;
|
|
}
|
|
|
|
/* Suppress variables not in usable sequences*/
|
|
static NCerror
|
|
suppressunusablevars(NCDAPCOMMON* dapcomm)
|
|
{
|
|
int i,j;
|
|
int found = 1;
|
|
NClist* path = nclistnew();
|
|
|
|
while(found) {
|
|
found = 0;
|
|
/* Walk backwards to aid removal semantics */
|
|
for(i=nclistlength(dapcomm->cdf.ddsroot->tree->varnodes)-1;i>=0;i--) {
|
|
CDFnode* var = (CDFnode*)nclistget(dapcomm->cdf.ddsroot->tree->varnodes,i);
|
|
/* See if this var is under an unusable sequence */
|
|
nclistclear(path);
|
|
collectnodepath(var,path,WITHOUTDATASET);
|
|
for(j=0;j<nclistlength(path);j++) {
|
|
CDFnode* node = (CDFnode*)nclistget(path,j);
|
|
if(node->nctype == NC_Sequence
|
|
&& !node->usesequence) {
|
|
#ifdef DEBUG
|
|
fprintf(stderr,"suppressing var in unusable sequence: %s.%s\n",node->ncfullname,var->ncbasename);
|
|
#endif
|
|
found = 1;
|
|
break;
|
|
}
|
|
}
|
|
if(found) break;
|
|
}
|
|
if(found) nclistremove(dapcomm->cdf.ddsroot->tree->varnodes,i);
|
|
}
|
|
nclistfree(path);
|
|
return NC_NOERR;
|
|
}
|
|
|
|
|
|
/*
|
|
For variables which have a zero size dimension,
|
|
make them invisible.
|
|
*/
|
|
static NCerror
|
|
fixzerodims(NCDAPCOMMON* dapcomm)
|
|
{
|
|
int i,j;
|
|
for(i=0;i<nclistlength(dapcomm->cdf.ddsroot->tree->varnodes);i++) {
|
|
CDFnode* var = (CDFnode*)nclistget(dapcomm->cdf.ddsroot->tree->varnodes,i);
|
|
NClist* ncdims = var->array.dimsetplus;
|
|
if(nclistlength(ncdims) == 0) continue;
|
|
for(j=0;j<nclistlength(ncdims);j++) {
|
|
CDFnode* dim = (CDFnode*)nclistget(ncdims,j);
|
|
if(dim->dim.declsize == 0) {
|
|
/* make node invisible */
|
|
var->invisible = 1;
|
|
var->zerodim = 1;
|
|
}
|
|
}
|
|
}
|
|
return NC_NOERR;
|
|
}
|
|
|
|
static void
|
|
applyclientparamcontrols(NCDAPCOMMON* dapcomm)
|
|
{
|
|
/* clear the flags */
|
|
CLRFLAG(dapcomm->controls,NCF_CACHE);
|
|
CLRFLAG(dapcomm->controls,NCF_SHOWFETCH);
|
|
CLRFLAG(dapcomm->controls,NCF_NC3);
|
|
CLRFLAG(dapcomm->controls,NCF_NCDAP);
|
|
CLRFLAG(dapcomm->controls,NCF_PREFETCH);
|
|
CLRFLAG(dapcomm->controls,NCF_PREFETCH_EAGER);
|
|
|
|
/* Turn on any default on flags */
|
|
SETFLAG(dapcomm->controls,DFALT_ON_FLAGS);
|
|
SETFLAG(dapcomm->controls,(NCF_NC3|NCF_NCDAP));
|
|
|
|
/* enable/disable caching */
|
|
if(dapparamcheck(dapcomm,"cache",NULL))
|
|
SETFLAG(dapcomm->controls,NCF_CACHE);
|
|
else if(dapparamcheck(dapcomm,"nocache",NULL))
|
|
CLRFLAG(dapcomm->controls,NCF_CACHE);
|
|
|
|
/* enable/disable cache prefetch and lazy vs eager*/
|
|
if(dapparamcheck(dapcomm,"prefetch","eager")) {
|
|
SETFLAG(dapcomm->controls,NCF_PREFETCH);
|
|
SETFLAG(dapcomm->controls,NCF_PREFETCH_EAGER);
|
|
} else if(dapparamcheck(dapcomm,"prefetch","lazy")
|
|
|| dapparamcheck(dapcomm,"prefetch",NULL)) {
|
|
SETFLAG(dapcomm->controls,NCF_PREFETCH);
|
|
CLRFLAG(dapcomm->controls,NCF_PREFETCH_EAGER);
|
|
} else if(dapparamcheck(dapcomm,"noprefetch",NULL))
|
|
CLRFLAG(dapcomm->controls,NCF_PREFETCH);
|
|
|
|
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE))
|
|
SETFLAG(dapcomm->controls,NCF_CACHE);
|
|
|
|
if(dapparamcheck(dapcomm,"show","fetch"))
|
|
SETFLAG(dapcomm->controls,NCF_SHOWFETCH);
|
|
|
|
/* enable/disable _FillValue/Variable Mis-match */
|
|
if(dapparamcheck(dapcomm,"fillmismatch",NULL))
|
|
SETFLAG(dapcomm->controls,NCF_FILLMISMATCH);
|
|
else if(dapparamcheck(dapcomm,"nofillmismatch",NULL))
|
|
CLRFLAG(dapcomm->controls,NCF_FILLMISMATCH);
|
|
|
|
nclog(NCLOGNOTE,"Caching=%d",FLAGSET(dapcomm->controls,NCF_CACHE));
|
|
|
|
}
|
|
|
|
/*
|
|
Force dap2 access to be read-only
|
|
*/
|
|
int
|
|
NCD2_set_fill(int ncid, int fillmode, int* old_modep)
|
|
{
|
|
return THROW(NC_EPERM);
|
|
}
|
|
|
|
int
|
|
NCD2_set_base_pe(int ncid, int pe)
|
|
{
|
|
return THROW(NC_EPERM);
|
|
}
|
|
|
|
int
|
|
NCD2_def_dim(int ncid, const char* name, size_t len, int* idp)
|
|
{
|
|
return THROW(NC_EPERM);
|
|
}
|
|
|
|
int
|
|
NCD2_put_att(int ncid, int varid, const char* name, nc_type datatype,
|
|
size_t len, const void* value, nc_type t)
|
|
{
|
|
return THROW(NC_EPERM);
|
|
}
|
|
|
|
int
|
|
NCD2_def_var(int ncid, const char *name,
|
|
nc_type xtype, int ndims, const int *dimidsp, int *varidp)
|
|
{
|
|
return THROW(NC_EPERM);
|
|
}
|
|
|
|
/*
|
|
Following functions basically return the netcdf-3 value WRT to the nc3id.
|
|
*/
|
|
|
|
int
|
|
NCD2_inq_base_pe(int ncid, int* pe)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_base_pe(getnc3id(drno), pe);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_format(int ncid, int* formatp)
|
|
{
|
|
NC* drno;
|
|
int ret = NC_NOERR;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_format(getnc3id(drno), formatp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq(int ncid, int* ndimsp, int* nvarsp, int* nattsp, int* unlimdimidp)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq(getnc3id(drno), ndimsp, nvarsp, nattsp, unlimdimidp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_type(int ncid, nc_type p2, char* p3, size_t* p4)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_type(getnc3id(drno), p2, p3, p4);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_dimid(int ncid, const char* name, int* idp)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_dimid(getnc3id(drno), name, idp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_dim(int ncid, int dimid, char* name, size_t* lenp)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_dim(getnc3id(drno), dimid, name, lenp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_unlimdim(int ncid, int* unlimdimidp)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_unlimdim(getnc3id(drno), unlimdimidp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_rename_dim(int ncid, int dimid, const char* name)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_rename_dim(getnc3id(drno), dimid, name);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_att(int ncid, int varid, const char* name,
|
|
nc_type* xtypep, size_t* lenp)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_att(getnc3id(drno), varid, name, xtypep, lenp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_attid(int ncid, int varid, const char *name, int *idp)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_attid(getnc3id(drno), varid, name, idp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_attname(int ncid, int varid, int attnum, char* name)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_attname(getnc3id(drno), varid, attnum, name);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_rename_att(int ncid, int varid, const char* name, const char* newname)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_rename_att(getnc3id(drno), varid, name, newname);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_del_att(int ncid, int varid, const char* p3)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_del_att(getnc3id(drno), varid, p3);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_get_att(int ncid, int varid, const char* name, void* value, nc_type t)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = NCDISPATCH_get_att(getnc3id(drno), varid, name, value, t);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_var_all(int ncid, int varid, char *name, nc_type* xtypep,
|
|
int* ndimsp, int* dimidsp, int* nattsp,
|
|
int* shufflep, int* deflatep, int* deflate_levelp,
|
|
int* fletcher32p, int* contiguousp, size_t* chunksizesp,
|
|
int* no_fill, void* fill_valuep, int* endiannessp,
|
|
unsigned int* idp, size_t* nparamsp, unsigned int* params
|
|
)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = NCDISPATCH_inq_var_all(getnc3id(drno), varid, name, xtypep,
|
|
ndimsp, dimidsp, nattsp,
|
|
shufflep, deflatep, deflate_levelp,
|
|
fletcher32p, contiguousp, chunksizesp,
|
|
no_fill, fill_valuep, endiannessp,
|
|
idp,nparamsp,params
|
|
);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_varid(int ncid, const char *name, int *varidp)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_varid(getnc3id(drno),name,varidp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_rename_var(int ncid, int varid, const char* name)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_rename_var(getnc3id(drno), varid, name);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_var_par_access(int ncid, int p2, int p3)
|
|
{
|
|
return THROW(NC_ENOPAR);
|
|
}
|
|
|
|
int
|
|
NCD2_def_var_fill(int ncid, int p2, int p3, const void* p4)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_def_var_fill(getnc3id(drno), p2, p3, p4);
|
|
return THROW(ret);
|
|
}
|
|
|
|
#ifdef USE_NETCDF4
|
|
|
|
int
|
|
NCD2_inq_ncid(int ncid, const char* name, int* grp_ncid)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_ncid(getnc3id(drno), name, grp_ncid);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_show_metadata(int ncid)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_show_metadata(getnc3id(drno));
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_grps(int ncid, int* p2, int* p3)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_grps(getnc3id(drno), p2, p3);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_grpname(int ncid, char* p)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_grpname(getnc3id(drno), p);
|
|
return THROW(ret);
|
|
}
|
|
|
|
|
|
int
|
|
NCD2_inq_unlimdims(int ncid, int* p2, int* p3)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_unlimdims(getnc3id(drno), p2, p3);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_grpname_full(int ncid, size_t* p2, char* p3)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_grpname_full(getnc3id(drno), p2, p3);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_grp_parent(int ncid, int* p)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_grp_parent(getnc3id(drno), p);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_grp_full_ncid(int ncid, const char* p2, int* p3)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_grp_full_ncid(getnc3id(drno), p2, p3);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_varids(int ncid, int* nvars, int* p)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_varids(getnc3id(drno), nvars, p);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_dimids(int ncid, int* ndims, int* p3, int p4)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_dimids(getnc3id(drno), ndims, p3, p4);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_typeids(int ncid, int* ntypes, int* p)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_typeids(getnc3id(drno), ntypes, p);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_type_equal(int ncid, nc_type t1, int p3, nc_type t2, int* p5)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_type_equal(getnc3id(drno), t1, p3, t2, p5);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_user_type(int ncid, nc_type t, char* p3, size_t* p4, nc_type* p5,
|
|
size_t* p6, int* p7)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_user_type(getnc3id(drno), t, p3, p4, p5, p6, p7);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_typeid(int ncid, const char* name, nc_type* t)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_typeid(getnc3id(drno), name, t);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_def_grp(int ncid, const char* p2, int* p3)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_def_grp(getnc3id(drno), p2, p3);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_rename_grp(int ncid, const char* p)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_rename_grp(getnc3id(drno), p);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_def_compound(int ncid, size_t p2, const char* p3, nc_type* t)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_def_compound(getnc3id(drno), p2, p3, t);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_insert_compound(int ncid, nc_type t1, const char* p3, size_t p4, nc_type t2)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_insert_compound(getnc3id(drno), t1, p3, p4, t2);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_insert_array_compound(int ncid, nc_type t1, const char* p3, size_t p4,
|
|
nc_type t2, int p6, const int* p7)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_insert_array_compound(getnc3id(drno), t1, p3, p4, t2, p6, p7);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_compound_field(int ncid, nc_type xtype, int fieldid, char *name,
|
|
size_t *offsetp, nc_type* field_typeidp, int *ndimsp,
|
|
int *dim_sizesp)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_compound_field(getnc3id(drno), xtype, fieldid, name, offsetp, field_typeidp, ndimsp, dim_sizesp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_compound_fieldindex(int ncid, nc_type xtype, const char *name,
|
|
int *fieldidp)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_compound_fieldindex(getnc3id(drno), xtype, name, fieldidp);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_def_vlen(int ncid, const char* p2, nc_type base_typeid, nc_type* t)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_def_vlen(getnc3id(drno), p2, base_typeid, t);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_put_vlen_element(int ncid, int p2, void* p3, size_t p4, const void* p5)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_put_vlen_element(getnc3id(drno), p2, p3, p4, p5);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_get_vlen_element(int ncid, int p2, const void* p3, size_t* p4, void* p5)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_get_vlen_element(getnc3id(drno), p2, p3, p4, p5);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_def_enum(int ncid, nc_type t1, const char* p3, nc_type* t)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_def_enum(getnc3id(drno), t1, p3, t);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_insert_enum(int ncid, nc_type t1, const char* p3, const void* p4)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_insert_enum(getnc3id(drno), t1, p3, p4);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_enum_member(int ncid, nc_type t1, int p3, char* p4, void* p5)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_enum_member(getnc3id(drno), t1, p3, p4, p5);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_inq_enum_ident(int ncid, nc_type t1, long long p3, char* p4)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_inq_enum_ident(getnc3id(drno), t1, p3, p4);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_def_opaque(int ncid, size_t p2, const char* p3, nc_type* t)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_def_opaque(getnc3id(drno), p2, p3, t);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_def_var_deflate(int ncid, int p2, int p3, int p4, int p5)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_def_var_deflate(getnc3id(drno), p2, p3, p4, p5);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_def_var_fletcher32(int ncid, int p2, int p3)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_def_var_fletcher32(getnc3id(drno), p2, p3);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_def_var_chunking(int ncid, int p2, int p3, const size_t* p4)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_def_var_chunking(getnc3id(drno), p2, p3, p4);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
|
|
NCD2_def_var_endian(int ncid, int p2, int p3)
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{
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NC* drno;
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int ret;
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if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
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ret = nc_def_var_endian(getnc3id(drno), p2, p3);
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return THROW(ret);
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}
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int
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NCD2_def_var_filter(int ncid, int varid, unsigned int id, size_t n, const unsigned int* params)
|
|
{
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|
NC* drno;
|
|
int ret;
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|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
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|
ret = nc_def_var_filter(getnc3id(drno), varid, id, n, params);
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|
return THROW(ret);
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|
}
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|
|
|
int
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NCD2_set_var_chunk_cache(int ncid, int p2, size_t p3, size_t p4, float p5)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
|
|
ret = nc_set_var_chunk_cache(getnc3id(drno), p2, p3, p4, p5);
|
|
return THROW(ret);
|
|
}
|
|
|
|
int
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|
NCD2_get_var_chunk_cache(int ncid, int p2, size_t* p3, size_t* p4, float* p5)
|
|
{
|
|
NC* drno;
|
|
int ret;
|
|
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
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|
ret = nc_get_var_chunk_cache(getnc3id(drno), p2, p3, p4, p5);
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|
return THROW(ret);
|
|
}
|
|
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#endif /* USE_NETCDF4 */
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