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netcdf-c/libdap2/ncd2dispatch.c
Dennis Heimbigner 4db4393e69 Begin changing over to use strlcat instead of strncat because 
strlcat provides better protection against buffer overflows.

Code is taken from the FreeBSD project source code. Specifically:
https://github.com/freebsd/freebsd/blob/master/lib/libc/string/strlcat.c
License appears to be acceptable, but needs to be checked by e.g. Debian.

Step 1:
1. Add to netcdf-c/include/ncconfigure.h to use our version
   if not already available as determined by HAVE_STRLCAT in config.h.
2. Add the strlcat code to libdispatch/dstring.c
3. Turns out that strlcat was already defined in several places.
   So remove it from:
	ncgen3/genlib.c
	ncdump/dumplib.c
3. Define strlcat extern definition in ncconfigure.h.
4. Modify following directories to use strlcat:
	libdap2 libdap4 ncdap_test dap4_test
   Will do others in subsequent steps.
2017-11-23 10:55:24 -07:00

2823 lines
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/*********************************************************************
* Copyright 1993, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
*********************************************************************/
#include "dapincludes.h"
#include "ncd2dispatch.h"
#include "ncrc.h"
#include "ncoffsets.h"
#ifdef DEBUG2
#include "dapdump.h"
#endif
#ifdef _MSC_VER
#include <crtdbg.h>
#endif
#ifdef HAVE_GETRLIMIT
# ifdef HAVE_SYS_RESOURCE_H
# include <sys/time.h>
# endif
# ifdef HAVE_SYS_RESOURCE_H
# include <sys/resource.h>
# endif
#endif
/* Define the set of protocols known to be constrainable */
static char* constrainableprotocols[] = {"http", "https",NULL};
static int ncd2initialized = 0;
/* Forward */
static NCerror buildncstructures(NCDAPCOMMON*);
static NCerror builddims(NCDAPCOMMON*);
static char* getdefinename(CDFnode* node);
static NCerror buildvars(NCDAPCOMMON*);
static NCerror buildglobalattrs(NCDAPCOMMON*, CDFnode* root);
static NCerror buildattribute(NCDAPCOMMON*, NCattribute*, nc_type, int);
static void computedimindexanon(CDFnode* dim, CDFnode* var);
static void replacedims(NClist* dims);
static int equivalentdim(CDFnode* basedim, CDFnode* dupdim);
static NCerror addstringdims(NCDAPCOMMON*);
static NCerror defrecorddim(NCDAPCOMMON*);
static NCerror defseqdims(NCDAPCOMMON*);
static NCerror showprojection(NCDAPCOMMON*, CDFnode* var);
static NCerror getseqdimsize(NCDAPCOMMON*, CDFnode* seq, size_t* sizep);
static NCerror makeseqdim(NCDAPCOMMON*, CDFnode* seq, size_t count, CDFnode** sqdimp);
static NCerror countsequence(NCDAPCOMMON*, CDFnode* xseq, size_t* sizep);
static NCerror freeNCDAPCOMMON(NCDAPCOMMON*);
static NCerror fetchpatternmetadata(NCDAPCOMMON*);
static size_t fieldindex(CDFnode* parent, CDFnode* child);
static NCerror computeseqcountconstraints(NCDAPCOMMON*, CDFnode*, NCbytes*);
static void computeseqcountconstraintsr(NCDAPCOMMON*, CDFnode*, CDFnode**);
static void estimatevarsizes(NCDAPCOMMON*);
static NCerror fetchconstrainedmetadata(NCDAPCOMMON*);
static NCerror suppressunusablevars(NCDAPCOMMON*);
static NCerror fixzerodims(NCDAPCOMMON*);
static void applyclientparamcontrols(NCDAPCOMMON*);
static NCerror applyclientparams(NCDAPCOMMON*);
/**************************************************/
static int
NCD2_create(const char *path, int cmode,
size_t initialsz, int basepe, size_t *chunksizehintp,
int use_parallel, void* mpidata,
NC_Dispatch*,NC* ncp);
static int NCD2_redef(int ncid);
static int NCD2__enddef(int ncid, size_t h_minfree, size_t v_align, size_t v_minfree, size_t r_align);
static int NCD2_sync(int ncid);
static int NCD2_abort(int ncid);
static int NCD2_put_vara(int ncid, int varid,
const size_t *start, const size_t *edges0,
const void *value0,
nc_type memtype);
static int NCD2_get_vara(int ncid, int varid,
const size_t *start, const size_t *edges,
void *value,
nc_type memtype);
static int NCD2_put_vars(int ncid, int varid,
const size_t *start, const size_t *edges, const ptrdiff_t* stride,
const void *value0, nc_type memtype);
static int NCD2_get_vars(int ncid, int varid,
const size_t *start, const size_t *edges, const ptrdiff_t* stride,
void *value, nc_type memtype);
static NC_Dispatch NCD2_dispatch_base = {
NC_FORMATX_DAP2,
NCD2_create,
NCD2_open,
NCD2_redef,
NCD2__enddef,
NCD2_sync,
NCD2_abort,
NCD2_close,
NCD2_set_fill,
NCD2_inq_base_pe,
NCD2_set_base_pe,
NCD2_inq_format,
NCD2_inq_format_extended, /*inq_format_extended*/
NCD2_inq,
NCD2_inq_type,
NCD2_def_dim,
NCD2_inq_dimid,
NCD2_inq_dim,
NCD2_inq_unlimdim,
NCD2_rename_dim,
NCD2_inq_att,
NCD2_inq_attid,
NCD2_inq_attname,
NCD2_rename_att,
NCD2_del_att,
NCD2_get_att,
NCD2_put_att,
NCD2_def_var,
NCD2_inq_varid,
NCD2_rename_var,
NCD2_get_vara,
NCD2_put_vara,
NCD2_get_vars,
NCD2_put_vars,
NCDEFAULT_get_varm,
NCDEFAULT_put_varm,
NCD2_inq_var_all,
NCD2_var_par_access,
#ifdef USE_NETCDF4
NCD2_show_metadata,
NCD2_inq_unlimdims,
NCD2_inq_ncid,
NCD2_inq_grps,
NCD2_inq_grpname,
NCD2_inq_grpname_full,
NCD2_inq_grp_parent,
NCD2_inq_grp_full_ncid,
NCD2_inq_varids,
NCD2_inq_dimids,
NCD2_inq_typeids,
NCD2_inq_type_equal,
NCD2_def_grp,
NCD2_rename_grp,
NCD2_inq_user_type,
NCD2_inq_typeid,
NCD2_def_compound,
NCD2_insert_compound,
NCD2_insert_array_compound,
NCD2_inq_compound_field,
NCD2_inq_compound_fieldindex,
NCD2_def_vlen,
NCD2_put_vlen_element,
NCD2_get_vlen_element,
NCD2_def_enum,
NCD2_insert_enum,
NCD2_inq_enum_member,
NCD2_inq_enum_ident,
NCD2_def_opaque,
NCD2_def_var_deflate,
NCD2_def_var_fletcher32,
NCD2_def_var_chunking,
NCD2_def_var_fill,
NCD2_def_var_endian,
NCD2_def_var_filter,
NCD2_set_var_chunk_cache,
NCD2_get_var_chunk_cache,
#endif /*USE_NETCDF4*/
};
NC_Dispatch* NCD2_dispatch_table = NULL; /* moved here from ddispatch.c */
static NC_Dispatch NCD2_dispatcher;
int
NCD2_initialize(void)
{
NCD2_dispatch_table = &NCD2_dispatch_base;
ncd2initialized = 1;
#ifdef DEBUG
/* force logging to go to stderr */
nclogclose();
if(nclogopen(NULL))
ncsetlogging(1); /* turn it on */
#endif
return NC_NOERR;
}
int
NCD2_finalize(void)
{
return NC_NOERR;
}
static int
NCD2_redef(int ncid)
{
return (NC_EPERM);
}
static int
NCD2__enddef(int ncid, size_t h_minfree, size_t v_align, size_t v_minfree, size_t r_align)
{
return (NC_EPERM);
}
static int
NCD2_sync(int ncid)
{
return (NC_EINVAL);
}
static int
NCD2_abort(int ncid)
{
return NCD2_close(ncid);
}
static int
NCD2_create(const char *path, int cmode,
size_t initialsz, int basepe, size_t *chunksizehintp,
int use_parallel, void* mpidata,
NC_Dispatch* dispatch, NC* ncp)
{
return NC_EPERM;
}
static int
NCD2_put_vara(int ncid, int varid,
const size_t *start, const size_t *edges,
const void *value,
nc_type memtype)
{
return NC_EPERM;
}
static int
NCD2_get_vara(int ncid, int varid,
const size_t *start, const size_t *edges,
void *value,
nc_type memtype)
{
int stat = nc3d_getvarx(ncid, varid, start, edges, nc_ptrdiffvector1, value,memtype);
return stat;
}
static int
NCD2_put_vars(int ncid, int varid,
const size_t *start, const size_t *edges, const ptrdiff_t* stride,
const void *value0, nc_type memtype)
{
return NC_EPERM;
}
static int
NCD2_get_vars(int ncid, int varid,
const size_t *start, const size_t *edges, const ptrdiff_t* stride,
void *value, nc_type memtype)
{
int stat = nc3d_getvarx(ncid, varid, start, edges, stride, value, memtype);
return stat;
}
/* See ncd2dispatch.c for other version */
int
NCD2_open(const char* path, int mode,
int basepe, size_t *chunksizehintp,
int useparallel, void* mpidata,
NC_Dispatch* dispatch, NC* drno)
{
NCerror ncstat = NC_NOERR;
OCerror ocstat = OC_NOERR;
NCDAPCOMMON* dapcomm = NULL;
const char* value;
int nc3id = -1;
if(path == NULL)
{ncstat = NC_EDAPURL; goto done;}
if(dispatch == NULL)
PANIC("NCD3_open: no dispatch table");
/* Setup our NC and NCDAPCOMMON state*/
dapcomm = (NCDAPCOMMON*)calloc(1,sizeof(NCDAPCOMMON));
if(dapcomm == NULL)
{ncstat = NC_ENOMEM; goto done;}
NCD2_DATA_SET(drno,dapcomm);
drno->int_ncid = nc__pseudofd(); /* create a unique id */
dapcomm->controller = (NC*)drno;
dapcomm->cdf.separator = ".";
dapcomm->cdf.smallsizelimit = DFALTSMALLLIMIT;
dapcomm->cdf.cache = createnccache();
#ifdef HAVE_GETRLIMIT
{ struct rlimit rl;
if(getrlimit(RLIMIT_NOFILE, &rl) >= 0) {
dapcomm->cdf.cache->cachecount = (size_t)(rl.rlim_cur / 2);
}
}
#endif
#ifdef OCCOMPILEBYDEFAULT
{ int rullen = 0;
/* set the compile flag by default */
rullen = strlen(path)+strlen("[compile]");;
rullen++; /* strlcat nul */
dapcomm->oc.rawurltext = (char*)emalloc(rullen+1);
strncpy(dapcomm->oc.rawurltext,"[compile]",rullen);
strlcat(dapcomm->oc.rawurltext, path, rullen);
}
#else
dapcomm->oc.rawurltext = strdup(path);
#endif
if(ncuriparse(dapcomm->oc.rawurltext,&dapcomm->oc.url) != NCU_OK)
{ncstat = NC_EURL; goto done;}
if(!constrainable(dapcomm->oc.url))
SETFLAG(dapcomm->controls,NCF_UNCONSTRAINABLE);
#ifdef COLUMBIA_HACK
{
const char* p;
/* Does this url look like it is from columbia? */
if(dapcomm->oc.url->host != NULL) {
for(p=dapcomm->oc.url->host;*p;p++) {
if(strncmp(p,COLUMBIA_HACK,strlen(COLUMBIA_HACK))==0)
SETFLAG(dapcomm->controls,NCF_COLUMBIA);
}
}
}
#endif
/* fail if we are unconstrainable but have constraints */
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE)) {
if(dapcomm->oc.url->query != NULL) {
nclog(NCLOGWARN,"Attempt to constrain an unconstrainable data source: %s",
dapcomm->oc.url->query);
ncstat = THROW(NC_EDAPCONSTRAINT);
goto done;
}
}
/* Use libsrc code (netcdf-3) for storing metadata */
{
char tmpname[32];
/* Create fake file name: exact name must be unique,
but is otherwise irrelevant because we are using NC_DISKLESS
*/
snprintf(tmpname,sizeof(tmpname),"tmp_%d",drno->int_ncid);
/* Now, use the file to create the hidden, in-memory netcdf file.
We want this hidden file to always be NC_CLASSIC, so we need to
force default format temporarily in case user changed it.
If diskless is enabled, then create file in-memory, else
create an actual temporary file in the file system.
*/
{
int new = 0; /* format netcdf-3 */
int old = 0;
int ncflags = NC_CLOBBER|NC_CLASSIC_MODEL;
#ifdef USE_DISKLESS
ncflags |= NC_DISKLESS;
#endif
nc_set_default_format(new,&old); /* save and change */
ncstat = nc_create(tmpname,ncflags,&nc3id);
nc_set_default_format(old,&new); /* restore */
dapcomm->substrate.realfile = ((ncflags & NC_DISKLESS) != 0);
dapcomm->substrate.filename = strdup(tmpname);
if(tmpname == NULL) ncstat = NC_ENOMEM;
dapcomm->substrate.nc3id = nc3id;
}
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
/* Avoid fill */
nc_set_fill(nc3id,NC_NOFILL,NULL);
}
dapcomm->oc.dapconstraint = (DCEconstraint*)dcecreate(CES_CONSTRAINT);
dapcomm->oc.dapconstraint->projections = nclistnew();
dapcomm->oc.dapconstraint->selections = nclistnew();
/* Parse constraints to make sure they are syntactically correct */
ncstat = dapparsedapconstraints(dapcomm,dapcomm->oc.url->query,dapcomm->oc.dapconstraint);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
/* Construct a url for oc minus any constraint and params*/
dapcomm->oc.urltext = ncuribuild(dapcomm->oc.url,NULL,NULL,NCURIBASE);
/* Pass to OC */
ocstat = oc_open(dapcomm->oc.urltext,&dapcomm->oc.conn);
if(ocstat != OC_NOERR) {THROWCHK(ocstat); goto done;}
#ifdef DEBUG1
(void)oc_trace_curl(dapcomm->oc.conn);
#endif
nullfree(dapcomm->oc.urltext); /* clean up */
dapcomm->oc.urltext = NULL;
/* process control client parameters */
applyclientparamcontrols(dapcomm);
/* Turn on logging; only do this after oc_open*/
if((value = dapparamvalue(dapcomm,"log")) != NULL) {
ncloginit();
if(nclogopen(value))
ncsetlogging(1);
ncloginit();
if(nclogopen(value))
ncsetlogging(1);
}
/* fetch and build the unconstrained DDS for use as
pattern */
ncstat = fetchpatternmetadata(dapcomm);
if(ncstat != NC_NOERR) goto done;
/* Operations on the pattern tree */
/* Accumulate useful nodes sets */
ncstat = computecdfnodesets(dapcomm,dapcomm->cdf.fullddsroot->tree);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* Define the dimsettrans list */
ncstat = definedimsettrans(dapcomm,dapcomm->cdf.fullddsroot->tree);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* Mark the nodes of the pattern that are eligible for prefetch */
ncstat = markprefetch(dapcomm);
/* fetch and build the constrained DDS */
ncstat = fetchconstrainedmetadata(dapcomm);
if(ncstat != NC_NOERR) goto done;
#ifdef DEBUG2
fprintf(stderr,"constrained dds: %s\n",dumptree(dapcomm->cdf.ddsroot));
#endif
/* Operations on the constrained tree */
/* Accumulate useful nodes sets */
ncstat = computecdfnodesets(dapcomm,dapcomm->cdf.ddsroot->tree);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* Fix grids */
ncstat = fixgrids(dapcomm);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* Locate and mark usable sequences */
ncstat = sequencecheck(dapcomm);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* suppress variables not in usable sequences */
ncstat = suppressunusablevars(dapcomm);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* apply client parameters */
ncstat = applyclientparams(dapcomm);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* Add (as needed) string dimensions*/
ncstat = addstringdims(dapcomm);
if(ncstat) {THROWCHK(ncstat); goto done;}
if(nclistlength(dapcomm->cdf.ddsroot->tree->seqnodes) > 0) {
/* Build the sequence related dimensions */
ncstat = defseqdims(dapcomm);
if(ncstat) {THROWCHK(ncstat); goto done;}
}
/* Define the dimsetplus and dimsetall lists */
ncstat = definedimsets(dapcomm,dapcomm->cdf.ddsroot->tree);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* Re-compute the dimension names*/
ncstat = computecdfdimnames(dapcomm);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* Deal with zero size dimensions */
ncstat = fixzerodims(dapcomm);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* Attempt to use the DODS_EXTRA info to turn
one of the dimensions into unlimited.
Assume computecdfdimnames34 has already been called.
*/
ncstat = defrecorddim(dapcomm);
if(ncstat) {THROWCHK(ncstat); goto done;}
if(dapcomm->cdf.recorddimname != NULL
&& nclistlength(dapcomm->cdf.ddsroot->tree->seqnodes) > 0) {
/*nclog(NCLOGWARN,"unlimited dimension specified, but sequences exist in DDS");*/
PANIC("unlimited dimension specified, but sequences exist in DDS");
}
/* Re-compute the var names*/
ncstat = computecdfvarnames(dapcomm,
dapcomm->cdf.ddsroot,
dapcomm->cdf.ddsroot->tree->varnodes);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* Transfer data from the unconstrained DDS data to the unconstrained DDS */
ncstat = dimimprint(dapcomm);
if(ncstat) goto done;
/* Process the constraints to map to the constrained CDF tree */
/* (must follow fixgrids3) */
ncstat = dapmapconstraints(dapcomm->oc.dapconstraint,dapcomm->cdf.ddsroot);
if(ncstat != NC_NOERR) goto done;
/* Canonicalize the constraint */
ncstat = dapfixprojections(dapcomm->oc.dapconstraint->projections);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
/* Fill in segment information */
ncstat = dapqualifyconstraints(dapcomm->oc.dapconstraint);
if(ncstat != NC_NOERR) goto done;
/* Accumulate set of variables in the constraint's projections */
ncstat = dapcomputeprojectedvars(dapcomm,dapcomm->oc.dapconstraint);
if(ncstat) {THROWCHK(ncstat); goto done;}
/* using the modified constraint, rebuild the constraint string */
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE)) {
/* ignore all constraints */
dapcomm->oc.urltext = ncuribuild(dapcomm->oc.url,NULL,NULL,NCURIBASE);
} else {
char* constraintstring = dcebuildconstraintstring(dapcomm->oc.dapconstraint);
ncurisetquery(dapcomm->oc.url,constraintstring);
nullfree(constraintstring);
dapcomm->oc.urltext = ncuribuild(dapcomm->oc.url,NULL,NULL,NCURISVC);
}
#ifdef DEBUG
fprintf(stderr,"ncdap3: final constraint: %s\n",dapcomm->oc.url->query);
#endif
/* Estimate the variable sizes */
estimatevarsizes(dapcomm);
/* Build the meta data */
ncstat = buildncstructures(dapcomm);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
/* Explicitly do not call enddef because it will complain
about variables that are too large.
*/
#if 0
ncstat = nc_endef(nc3id,NC_NOFILL,NULL);
if(ncstat != NC_NOERR && ncstat != NC_EVARSIZE)
{THROWCHK(ncstat); goto done;}
#endif
{ /* (for now) break abstractions*/
NC* ncsub;
NC3_INFO* nc3i;
CDFnode* unlimited = dapcomm->cdf.recorddim;
/* get the dispatch data for the substrate */
ncstat = NC_check_id(nc3id,&ncsub);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
nc3i = (NC3_INFO*)ncsub->dispatchdata;
/* This must be checked after all dds and data processing
so we can figure out the value of numrecs.
*/
if(unlimited != NULL) { /* Set the effective size of UNLIMITED */
NC_set_numrecs(nc3i,unlimited->dim.declsize);
}
/* Pretend the substrate is read-only */
NC_set_readonly(nc3i);
}
/* Do any necessary data prefetch */
if(FLAGSET(dapcomm->controls,NCF_PREFETCH)
&& FLAGSET(dapcomm->controls,NCF_PREFETCH_EAGER)) {
ncstat = prefetchdata(dapcomm);
if(ncstat != NC_NOERR) {
del_from_NCList((NC*)drno); /* undefine here */
{THROWCHK(ncstat); goto done;}
}
}
return ncstat;
done:
if(drno != NULL) NCD2_close(drno->ext_ncid);
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
return THROW(ncstat);
}
int
NCD2_close(int ncid)
{
NC* drno;
NCDAPCOMMON* dapcomm;
int ncstatus = NC_NOERR;
ncstatus = NC_check_id(ncid, (NC**)&drno);
if(ncstatus != NC_NOERR) return THROW(ncstatus);
dapcomm = (NCDAPCOMMON*)drno->dispatchdata;
/* We call abort rather than close to avoid
trying to write anything or try to pad file length
*/
ncstatus = nc_abort(getnc3id(drno));
/* clean NC* */
freeNCDAPCOMMON(dapcomm);
return THROW(ncstatus);
}
/**************************************************/
static NCerror
buildncstructures(NCDAPCOMMON* dapcomm)
{
NCerror ncstat = NC_NOERR;
CDFnode* dds = dapcomm->cdf.ddsroot;
ncstat = buildglobalattrs(dapcomm,dds);
if(ncstat != NC_NOERR) goto done;
ncstat = builddims(dapcomm);
if(ncstat != NC_NOERR) goto done;
ncstat = buildvars(dapcomm);
if(ncstat != NC_NOERR) goto done;
done:
return THROW(ncstat);
}
static NCerror
builddims(NCDAPCOMMON* dapcomm)
{
int i;
NCerror ncstat = NC_NOERR;
int dimid;
NClist* dimset = NULL;
NC* drno = dapcomm->controller;
NC* ncsub;
char* definename;
/* collect all dimensions from variables */
dimset = dapcomm->cdf.ddsroot->tree->dimnodes;
/* Sort by fullname just for the fun of it */
for(;;) {
int last = nclistlength(dimset) - 1;
int swap = 0;
for(i=0;i<last;i++) {
CDFnode* dim1 = (CDFnode*)nclistget(dimset,i);
CDFnode* dim2 = (CDFnode*)nclistget(dimset,i+1);
if(strcmp(dim1->ncfullname,dim2->ncfullname) > 0) {
nclistset(dimset,i,(void*)dim2);
nclistset(dimset,i+1,(void*)dim1);
swap = 1;
break;
}
}
if(!swap) break;
}
/* Define unlimited only if needed */
if(dapcomm->cdf.recorddim != NULL) {
CDFnode* unlimited = dapcomm->cdf.recorddim;
definename = getdefinename(unlimited);
ncstat = nc_def_dim(dapcomm->substrate.nc3id,
definename,
NC_UNLIMITED,
&unlimited->ncid);
nullfree(definename);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
/* get the id for the substrate */
ncstat = NC_check_id(dapcomm->substrate.nc3id,&ncsub);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
#if 0
nc3sub = (NC3_INFO*)&ncsub->dispatchdata;
/* Set the effective size of UNLIMITED;
note that this cannot easily be done thru the normal API.*/
NC_set_numrecs(nc3sub,unlimited->dim.declsize);
#endif
}
for(i=0;i<nclistlength(dimset);i++) {
CDFnode* dim = (CDFnode*)nclistget(dimset,i);
if(dim->dim.basedim != NULL) continue; /* handle below */
if(DIMFLAG(dim,CDFDIMRECORD)) continue; /* defined above */
#ifdef DEBUG1
fprintf(stderr,"define: dim: %s=%ld\n",dim->ncfullname,(long)dim->dim.declsize);
#endif
definename = getdefinename(dim);
ncstat = nc_def_dim(dapcomm->substrate.nc3id,definename,dim->dim.declsize,&dimid);
if(ncstat != NC_NOERR) {
THROWCHK(ncstat); nullfree(definename); goto done;
}
nullfree(definename);
dim->ncid = dimid;
}
/* Make all duplicate dims have same dimid as basedim*/
/* (see computecdfdimnames)*/
for(i=0;i<nclistlength(dimset);i++) {
CDFnode* dim = (CDFnode*)nclistget(dimset,i);
if(dim->dim.basedim != NULL) {
dim->ncid = dim->dim.basedim->ncid;
}
}
done:
nclistfree(dimset);
return THROW(ncstat);
}
/* Simultaneously build any associated attributes*/
/* and any necessary pseudo-dimensions for string types*/
static NCerror
buildvars(NCDAPCOMMON* dapcomm)
{
int i,j;
NCerror ncstat = NC_NOERR;
int varid;
NClist* varnodes = dapcomm->cdf.ddsroot->tree->varnodes;
NC* drno = dapcomm->controller;
char* definename;
ASSERT((varnodes != NULL));
for(i=0;i<nclistlength(varnodes);i++) {
CDFnode* var = (CDFnode*)nclistget(varnodes,i);
int dimids[NC_MAX_VAR_DIMS];
unsigned int ncrank;
NClist* vardims = NULL;
if(var->invisible) continue;
if(var->array.basevar != NULL) continue;
#ifdef DEBUG1
fprintf(stderr,"buildvars.candidate=|%s|\n",var->ncfullname);
#endif
vardims = var->array.dimsetall;
ncrank = nclistlength(vardims);
if(ncrank > 0) {
for(j=0;j<ncrank;j++) {
CDFnode* dim = (CDFnode*)nclistget(vardims,j);
dimids[j] = dim->ncid;
}
}
definename = getdefinename(var);
#ifdef DEBUG1
fprintf(stderr,"define: var: %s/%s",
definename,var->ocname);
if(ncrank > 0) {
int k;
for(k=0;k<ncrank;k++) {
CDFnode* dim = (CDFnode*)nclistget(vardims,k);
fprintf(stderr,"[%ld]",dim->dim.declsize);
}
}
fprintf(stderr,"\n");
#endif
ncstat = nc_def_var(dapcomm->substrate.nc3id,
definename,
var->externaltype,
ncrank,
(ncrank==0?NULL:dimids),
&varid);
nullfree(definename);
if(ncstat != NC_NOERR) {
THROWCHK(ncstat);
goto done;
}
var->ncid = varid;
if(var->attributes != NULL) {
for(j=0;j<nclistlength(var->attributes);j++) {
NCattribute* att = (NCattribute*)nclistget(var->attributes,j);
ncstat = buildattribute(dapcomm,att,var->etype,varid);
if(ncstat != NC_NOERR) goto done;
}
}
/* Tag the variable with its DAP path */
if(dapparamcheck(dapcomm,"show","projection"))
showprojection(dapcomm,var);
}
done:
return THROW(ncstat);
}
static NCerror
buildglobalattrs(NCDAPCOMMON* dapcomm, CDFnode* root)
{
int i;
NCerror ncstat = NC_NOERR;
const char* txt;
char *nltxt, *p;
NCbytes* buf = NULL;
NClist* cdfnodes;
NC* drno = dapcomm->controller;
if(root->attributes != NULL) {
for(i=0;i<nclistlength(root->attributes);i++) {
NCattribute* att = (NCattribute*)nclistget(root->attributes,i);
ncstat = buildattribute(dapcomm,att,NC_NAT,NC_GLOBAL);
if(ncstat != NC_NOERR) goto done;
}
}
/* Add global attribute identifying the sequence dimensions */
if(dapparamcheck(dapcomm,"show","seqdims")) {
buf = ncbytesnew();
cdfnodes = dapcomm->cdf.ddsroot->tree->nodes;
for(i=0;i<nclistlength(cdfnodes);i++) {
CDFnode* dim = (CDFnode*)nclistget(cdfnodes,i);
if(dim->nctype != NC_Dimension) continue;
if(DIMFLAG(dim,CDFDIMSEQ)) {
char* cname = cdflegalname(dim->ocname);
if(ncbyteslength(buf) > 0) ncbytescat(buf,", ");
ncbytescat(buf,cname);
nullfree(cname);
}
}
if(ncbyteslength(buf) > 0) {
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_sequence_dimensions",
ncbyteslength(buf),ncbytescontents(buf));
}
}
/* Define some additional system global attributes
depending on show= clientparams*/
/* Ignore failures*/
if(dapparamcheck(dapcomm,"show","translate")) {
/* Add a global attribute to show the translation */
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_translate",
strlen("netcdf-3"),"netcdf-3");
}
if(dapparamcheck(dapcomm,"show","url")) {
if(dapcomm->oc.rawurltext != NULL)
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_url",
strlen(dapcomm->oc.rawurltext),dapcomm->oc.rawurltext);
}
if(dapparamcheck(dapcomm,"show","dds")) {
txt = NULL;
if(dapcomm->cdf.ddsroot != NULL)
txt = oc_tree_text(dapcomm->oc.conn,dapcomm->cdf.ddsroot->ocnode);
if(txt != NULL) {
/* replace newlines with spaces*/
nltxt = nulldup(txt);
for(p=nltxt;*p;p++) {if(*p == '\n' || *p == '\r' || *p == '\t') {*p = ' ';}};
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_dds",strlen(nltxt),nltxt);
nullfree(nltxt);
}
}
if(dapparamcheck(dapcomm,"show","das")) {
txt = NULL;
if(dapcomm->oc.ocdasroot != NULL)
txt = oc_tree_text(dapcomm->oc.conn,dapcomm->oc.ocdasroot);
if(txt != NULL) {
nltxt = nulldup(txt);
for(p=nltxt;*p;p++) {if(*p == '\n' || *p == '\r' || *p == '\t') {*p = ' ';}};
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,NC_GLOBAL,"_das",strlen(nltxt),nltxt);
nullfree(nltxt);
}
}
done:
ncbytesfree(buf);
return THROW(ncstat);
}
static NCerror
buildattribute(NCDAPCOMMON* dapcomm, NCattribute* att, nc_type vartype, int varid)
{
int i;
NCerror ncstat = NC_NOERR;
unsigned int nvalues = nclistlength(att->values);
NC* drno = dapcomm->controller;
/* If the type of the attribute is string, then we need*/
/* to convert to a single character string by concatenation.
modified: 10/23/09 to insert newlines.
modified: 10/28/09 to interpret escapes
*/
if(att->etype == NC_STRING || att->etype == NC_URL) {
char* newstring = NULL;
size_t newlen = 0;
for(i=0;i<nvalues;i++) {
char* s = (char*)nclistget(att->values,i);
newlen += (1+strlen(s));
}
newlen++; /* for strlcat nul */
newstring = (char*)malloc(newlen+1);
MEMCHECK(newstring,NC_ENOMEM);
newstring[0] = '\0';
for(i=0;i<nvalues;i++) {
char* s = (char*)nclistget(att->values,i);
if(i > 0) strlcat(newstring,"\n",newlen);
strlcat(newstring,s,newlen);
}
dapexpandescapes(newstring);
if(newstring[0]=='\0')
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,varid,att->name,1,newstring);
else
ncstat = nc_put_att_text(dapcomm->substrate.nc3id,varid,att->name,strlen(newstring),newstring);
free(newstring);
if(ncstat) goto done;
} else {
nc_type atype;
unsigned int typesize;
void* mem = NULL;
/* It turns out that some servers upgrade the type
of _FillValue in order to correctly preserve the
original value. However, since the type of the
underlying variable is not changes, we get a type
mismatch. So, make sure the type of the fillvalue
is the same as that of the controlling variable.
*/
if(varid != NC_GLOBAL && strcmp(att->name,"_FillValue")==0)
atype = nctypeconvert(dapcomm,vartype);
else
atype = nctypeconvert(dapcomm,att->etype);
typesize = nctypesizeof(atype);
if (nvalues > 0) {
mem = malloc(typesize * nvalues);
#ifdef _MSC_VER
_ASSERTE(_CrtCheckMemory());
#endif
}
ncstat = dapcvtattrval(atype,mem,att->values);
#ifdef _MSC_VER
_ASSERTE(_CrtCheckMemory());
#endif
if(ncstat) {nullfree(mem); goto done;}
ncstat = nc_put_att(dapcomm->substrate.nc3id,varid,att->name,atype,nvalues,mem);
#ifdef _MSC_VER
_ASSERTE(_CrtCheckMemory());
#endif
if(ncstat) {nullfree(mem); goto done;}
}
done:
return THROW(ncstat);
}
static char*
getdefinename(CDFnode* node)
{
char* spath = NULL;
NClist* path = NULL;
switch (node->nctype) {
case NC_Atomic:
/* The define name is same as the fullname with elided nodes */
path = nclistnew();
collectnodepath(node,path,!WITHDATASET);
spath = makepathstring(path,".",PATHNC|PATHELIDE);
nclistfree(path);
break;
case NC_Dimension:
/* Return just the node's ncname */
spath = nulldup(node->ncbasename);
break;
default:
PANIC("unexpected nctype");
}
return spath;
}
int
NCDAP2_ping(const char* url)
{
OCerror ocstat = OC_NOERR;
ocstat = oc_ping(url);
return ocerrtoncerr(ocstat);
}
int
NCD2_inq_format_extended(int ncid, int* formatp, int* modep)
{
NC* nc;
int ncstatus = NC_check_id(ncid, (NC**)&nc);
if(ncstatus != NC_NOERR) return THROW(ncstatus);
if(modep) *modep = nc->mode;
if(formatp) *formatp = NC_FORMATX_DAP2;
return NC_NOERR;
}
/**************************************************/
/* Support functions */
/*
Provide short and/or unified names for dimensions.
This must mimic lib-ncdap, which is difficult.
*/
NCerror
computecdfdimnames(NCDAPCOMMON* nccomm)
{
int i,j;
char tmp[NC_MAX_NAME*2];
NClist* conflicts = nclistnew();
NClist* varnodes = nccomm->cdf.ddsroot->tree->varnodes;
NClist* alldims;
NClist* basedims;
/* Collect all dimension nodes from dimsetall lists */
alldims = getalldims(nccomm,0);
/* Assign an index to all anonymous dimensions
vis-a-vis its containing variable
*/
for(i=0;i<nclistlength(varnodes);i++) {
CDFnode* var = (CDFnode*)nclistget(varnodes,i);
for(j=0;j<nclistlength(var->array.dimsetall);j++) {
CDFnode* dim = (CDFnode*)nclistget(var->array.dimsetall,j);
if(dim->ocname != NULL) continue; /* not anonymous */
computedimindexanon(dim,var);
}
}
/* Unify dimensions by defining one dimension as the "base"
dimension, and make all "equivalent" dimensions point to the
base dimension.
1. Equivalent means: same size and both have identical non-null names.
2. Dims with same name but different sizes will be handled separately
*/
for(i=0;i<nclistlength(alldims);i++) {
CDFnode* dupdim = NULL;
CDFnode* basedim = (CDFnode*)nclistget(alldims,i);
if(basedim == NULL) continue;
if(basedim->dim.basedim != NULL) continue; /* already processed*/
for(j=i+1;j<nclistlength(alldims);j++) { /* Sigh, n**2 */
dupdim = (CDFnode*)nclistget(alldims,j);
if(basedim == dupdim) continue;
if(dupdim == NULL) continue;
if(dupdim->dim.basedim != NULL) continue; /* already processed */
if(!equivalentdim(basedim,dupdim))
continue;
dupdim->dim.basedim = basedim; /* equate */
#ifdef DEBUG1
fprintf(stderr,"assign: %s/%s -> %s/%s\n",
basedim->dim.array->ocname,basedim->ocname,
dupdim->dim.array->ocname,dupdim->ocname
);
#endif
}
}
/* Next case: same name and different sizes*/
/* => rename second dim */
for(i=0;i<nclistlength(alldims);i++) {
CDFnode* basedim = (CDFnode*)nclistget(alldims,i);
if(basedim->dim.basedim != NULL) continue;
/* Collect all conflicting dimensions */
nclistclear(conflicts);
for(j=i+1;j<nclistlength(alldims);j++) {
CDFnode* dim = (CDFnode*)nclistget(alldims,j);
if(dim->dim.basedim != NULL) continue;
if(dim->ocname == NULL && basedim->ocname == NULL) continue;
if(dim->ocname == NULL || basedim->ocname == NULL) continue;
if(strcmp(dim->ocname,basedim->ocname)!=0) continue;
if(dim->dim.declsize == basedim->dim.declsize) continue;
#ifdef DEBUG2
fprintf(stderr,"conflict: %s[%lu] %s[%lu]\n",
basedim->ncfullname,(unsigned long)basedim->dim.declsize,
dim->ncfullname,(unsigned long)dim->dim.declsize);
#endif
nclistpush(conflicts,(void*)dim);
}
/* Give all the conflicting dimensions an index */
for(j=0;j<nclistlength(conflicts);j++) {
CDFnode* dim = (CDFnode*)nclistget(conflicts,j);
dim->dim.index1 = j+1;
}
}
nclistfree(conflicts);
/* Replace all non-base dimensions with their base dimension */
for(i=0;i<nclistlength(varnodes);i++) {
CDFnode* node = (CDFnode*)nclistget(varnodes,i);
replacedims(node->array.dimsetall);
replacedims(node->array.dimsetplus);
replacedims(node->array.dimset0);
}
/* Collect list of all basedims */
basedims = nclistnew();
for(i=0;i<nclistlength(alldims);i++) {
CDFnode* dim = (CDFnode*)nclistget(alldims,i);
if(dim->dim.basedim == NULL) {
if(!nclistcontains(basedims,(void*)dim)) {
nclistpush(basedims,(void*)dim);
}
}
}
nccomm->cdf.ddsroot->tree->dimnodes = basedims;
/* cleanup */
nclistfree(alldims);
/* Assign ncbasenames and ncfullnames to base dimensions */
for(i=0;i<nclistlength(basedims);i++) {
CDFnode* dim = (CDFnode*)nclistget(basedims,i);
CDFnode* var = dim->dim.array;
if(dim->dim.basedim != NULL) PANIC1("nonbase basedim: %s\n",dim->ocname);
/* stringdim names are already assigned */
if(dim->ocname == NULL) { /* anonymous: use the index to compute the name */
snprintf(tmp,sizeof(tmp),"%s_%d",
var->ncfullname,dim->dim.index1-1);
nullfree(dim->ncbasename);
dim->ncbasename = cdflegalname(tmp);
nullfree(dim->ncfullname);
dim->ncfullname = nulldup(dim->ncbasename);
} else { /* !anonymous; use index1 if defined */
char* legalname = cdflegalname(dim->ocname);
nullfree(dim->ncbasename);
if(dim->dim.index1 > 0) {/* need to fix conflicting names (see above) */
char sindex[64];
size_t baselen;
snprintf(sindex,sizeof(sindex),"_%d",dim->dim.index1);
baselen = strlen(sindex)+strlen(legalname);
baselen++; /* for strlcat nul */
dim->ncbasename = (char*)malloc(baselen+1);
if(dim->ncbasename == NULL) {nullfree(legalname); return NC_ENOMEM;}
strncpy(dim->ncbasename,legalname,baselen);
strlcat(dim->ncbasename,sindex,baselen);
nullfree(legalname);
} else {/* standard case */
dim->ncbasename = legalname;
}
nullfree(dim->ncfullname);
dim->ncfullname = nulldup(dim->ncbasename);
}
}
/* Verify unique and defined names for dimensions*/
for(i=0;i<nclistlength(basedims);i++) {
CDFnode* dim1 = (CDFnode*)nclistget(basedims,i);
CDFnode* dim2 = NULL;
if(dim1->dim.basedim != NULL) PANIC1("nonbase basedim: %s\n",dim1->ncbasename);
if(dim1->ncbasename == NULL || dim1->ncfullname == NULL)
PANIC1("missing dim names: %s",dim1->ocname);
/* search backward so we can delete duplicates */
for(j=nclistlength(basedims)-1;j>i;j--) {
if(!dim1->ncfullname) continue;
dim2 = (CDFnode*)nclistget(basedims,j);
if(strcmp(dim1->ncfullname,dim2->ncfullname)==0) {
/* complain and suppress one of them */
fprintf(stderr,"duplicate dim names: %s[%lu] %s[%lu]\n",
dim1->ncfullname,(unsigned long)dim1->dim.declsize,
dim2->ncfullname,(unsigned long)dim2->dim.declsize);
nclistremove(basedims,j);
}
}
}
#ifdef DEBUG
for(i=0;i<nclistlength(basedims);i++) {
CDFnode* dim = (CDFnode*)nclistget(basedims,i);
fprintf(stderr,"basedim: %s=%ld\n",dim->ncfullname,(long)dim->dim.declsize);
}
#endif
return NC_NOERR;
}
int
constrainable(NCURI* durl)
{
char** protocol = constrainableprotocols;
for(;*protocol;protocol++) {
if(strcmp(durl->protocol,*protocol)==0)
return 1;
}
return 0;
}
static const char*
paramlookup(NCDAPCOMMON* state, const char* key)
{
const char* value = NULL;
if(state == NULL || key == NULL || state->oc.url == NULL) return NULL;
value = ncurilookup(state->oc.url,key);
return value;
}
/* Note: this routine only applies some common
client parameters, other routines may apply
specific ones.
*/
static NCerror
applyclientparams(NCDAPCOMMON* nccomm)
{
int i,len;
int dfaltstrlen = DEFAULTSTRINGLENGTH;
int dfaltseqlim = DEFAULTSEQLIMIT;
const char* value;
char tmpname[NC_MAX_NAME+32];
char* pathstr;
OClink conn = nccomm->oc.conn;
unsigned long limit;
ASSERT(nccomm->oc.url != NULL);
nccomm->cdf.cache->cachelimit = DFALTCACHELIMIT;
value = paramlookup(nccomm,"cachelimit");
limit = getlimitnumber(value);
if(limit > 0) nccomm->cdf.cache->cachelimit = limit;
nccomm->cdf.fetchlimit = DFALTFETCHLIMIT;
value = paramlookup(nccomm,"fetchlimit");
limit = getlimitnumber(value);
if(limit > 0) nccomm->cdf.fetchlimit = limit;
nccomm->cdf.smallsizelimit = DFALTSMALLLIMIT;
value = paramlookup(nccomm,"smallsizelimit");
limit = getlimitnumber(value);
if(limit > 0) nccomm->cdf.smallsizelimit = limit;
nccomm->cdf.cache->cachecount = DFALTCACHECOUNT;
#ifdef HAVE_GETRLIMIT
{ struct rlimit rl;
if(getrlimit(RLIMIT_NOFILE, &rl) >= 0) {
nccomm->cdf.cache->cachecount = (size_t)(rl.rlim_cur / 2);
}
}
#endif
value = paramlookup(nccomm,"cachecount");
limit = getlimitnumber(value);
if(limit > 0) nccomm->cdf.cache->cachecount = limit;
/* Ignore limit if not caching */
if(!FLAGSET(nccomm->controls,NCF_CACHE))
nccomm->cdf.cache->cachecount = 0;
if(paramlookup(nccomm,"nolimit") != NULL)
dfaltseqlim = 0;
value = paramlookup(nccomm,"limit");
if(value != NULL && strlen(value) != 0) {
if(sscanf(value,"%d",&len) && len > 0) dfaltseqlim = len;
}
nccomm->cdf.defaultsequencelimit = dfaltseqlim;
/* allow embedded _ */
value = paramlookup(nccomm,"stringlength");
if(value != NULL && strlen(value) != 0) {
if(sscanf(value,"%d",&len) && len > 0) dfaltstrlen = len;
}
nccomm->cdf.defaultstringlength = dfaltstrlen;
/* String dimension limits apply to variables */
for(i=0;i<nclistlength(nccomm->cdf.ddsroot->tree->varnodes);i++) {
CDFnode* var = (CDFnode*)nclistget(nccomm->cdf.ddsroot->tree->varnodes,i);
/* Define the client param stringlength for this variable*/
var->maxstringlength = 0; /* => use global dfalt */
strncpy(tmpname,"stringlength_",sizeof(tmpname));
pathstr = makeocpathstring(conn,var->ocnode,".");
strlcat(tmpname,pathstr,sizeof(tmpname));
nullfree(pathstr);
value = paramlookup(nccomm,tmpname);
if(value != NULL && strlen(value) != 0) {
if(sscanf(value,"%d",&len) && len > 0) var->maxstringlength = len;
}
}
/* Sequence limits apply to sequences */
for(i=0;i<nclistlength(nccomm->cdf.ddsroot->tree->nodes);i++) {
CDFnode* var = (CDFnode*)nclistget(nccomm->cdf.ddsroot->tree->nodes,i);
if(var->nctype != NC_Sequence) continue;
var->sequencelimit = dfaltseqlim;
strncpy(tmpname,"nolimit_",sizeof(tmpname));
pathstr = makeocpathstring(conn,var->ocnode,".");
strlcat(tmpname,pathstr,sizeof(tmpname));
if(paramlookup(nccomm,tmpname) != NULL)
var->sequencelimit = 0;
strncpy(tmpname,"limit_",sizeof(tmpname));
strlcat(tmpname,pathstr,sizeof(tmpname));
value = paramlookup(nccomm,tmpname);
if(value != NULL && strlen(value) != 0) {
if(sscanf(value,"%d",&len) && len > 0)
var->sequencelimit = len;
}
nullfree(pathstr);
}
/* test for the appropriate fetch flags */
value = paramlookup(nccomm,"fetch");
if(value != NULL && strlen(value) > 0) {
if(value[0] == 'd' || value[0] == 'D') {
SETFLAG(nccomm->controls,NCF_ONDISK);
}
}
/* test for the force-whole-var flag */
value = paramlookup(nccomm,"wholevar");
if(value != NULL) {
SETFLAG(nccomm->controls,NCF_WHOLEVAR);
}
return NC_NOERR;
}
/**
* Given an anonymous dimension, compute the
* effective 0-based index wrt to the specified var.
* The result should mimic the libnc-dap indices.
*/
static void
computedimindexanon(CDFnode* dim, CDFnode* var)
{
int i;
NClist* dimset = var->array.dimsetall;
for(i=0;i<nclistlength(dimset);i++) {
CDFnode* candidate = (CDFnode*)nclistget(dimset,i);
if(dim == candidate) {
dim->dim.index1=i+1;
return;
}
}
}
/* Replace dims in a list with their corresponding basedim */
static void
replacedims(NClist* dims)
{
int i;
for(i=0;i<nclistlength(dims);i++) {
CDFnode* dim = (CDFnode*)nclistget(dims,i);
CDFnode* basedim = dim->dim.basedim;
if(basedim == NULL) continue;
nclistset(dims,i,(void*)basedim);
}
}
/**
Two dimensions are equivalent if
1. they have the same size
2. neither are anonymous
3. they ave the same names.
*/
static int
equivalentdim(CDFnode* basedim, CDFnode* dupdim)
{
if(dupdim->dim.declsize != basedim->dim.declsize) return 0;
if(basedim->ocname == NULL && dupdim->ocname == NULL) return 0;
if(basedim->ocname == NULL || dupdim->ocname == NULL) return 0;
if(strcmp(dupdim->ocname,basedim->ocname) != 0) return 0;
return 1;
}
static void
getalldimsa(NClist* dimset, NClist* alldims)
{
int i;
for(i=0;i<nclistlength(dimset);i++) {
CDFnode* dim = (CDFnode*)nclistget(dimset,i);
if(!nclistcontains(alldims,(void*)dim)) {
#ifdef DEBUG3
fprintf(stderr,"getalldims: %s[%lu]\n",
dim->ncfullname,(unsigned long)dim->dim.declsize);
#endif
nclistpush(alldims,(void*)dim);
}
}
}
/* Accumulate a set of all the known dimensions
vis-a-vis defined variables
*/
NClist*
getalldims(NCDAPCOMMON* nccomm, int visibleonly)
{
int i;
NClist* alldims = nclistnew();
NClist* varnodes = nccomm->cdf.ddsroot->tree->varnodes;
/* get bag of all dimensions */
for(i=0;i<nclistlength(varnodes);i++) {
CDFnode* node = (CDFnode*)nclistget(varnodes,i);
if(!visibleonly || !node->invisible) {
getalldimsa(node->array.dimsetall,alldims);
}
}
return alldims;
}
static NCerror
addstringdims(NCDAPCOMMON* dapcomm)
{
/* for all variables of string type, we will need another dimension
to represent the string; Accumulate the needed sizes and create
the dimensions with a specific name: either as specified
in DODS{...} attribute set or defaulting to the variable name.
All such dimensions are global.
*/
int i;
NClist* varnodes = dapcomm->cdf.ddsroot->tree->varnodes;
CDFnode* globalsdim = NULL;
char dimname[4096];
size_t dimsize;
/* Start by creating the global string dimension */
snprintf(dimname,sizeof(dimname),"maxStrlen%lu",
(unsigned long)dapcomm->cdf.defaultstringlength);
globalsdim = makecdfnode(dapcomm, dimname, OC_Dimension, NULL,
dapcomm->cdf.ddsroot);
nclistpush(dapcomm->cdf.ddsroot->tree->nodes,(void*)globalsdim);
DIMFLAGSET(globalsdim,CDFDIMSTRING);
globalsdim->dim.declsize = dapcomm->cdf.defaultstringlength;
globalsdim->dim.declsize0 = globalsdim->dim.declsize;
globalsdim->dim.array = dapcomm->cdf.ddsroot;
globalsdim->ncbasename = cdflegalname(dimname);
globalsdim->ncfullname = nulldup(globalsdim->ncbasename);
dapcomm->cdf.globalstringdim = globalsdim;
for(i=0;i<nclistlength(varnodes);i++) {
CDFnode* var = (CDFnode*)nclistget(varnodes,i);
CDFnode* sdim = NULL;
/* Does this node need a string dim? */
if(var->etype != NC_STRING && var->etype != NC_URL) continue;
dimsize = 0;
if(var->dodsspecial.maxstrlen > 0)
dimsize = var->dodsspecial.maxstrlen;
else
dimsize = var->maxstringlength;
/* check is a variable-specific string length was specified */
if(dimsize == 0)
sdim = dapcomm->cdf.globalstringdim; /* use default */
else {
/* create a psuedo dimension for the charification of the string*/
if(var->dodsspecial.dimname != NULL) {
strncpy(dimname,var->dodsspecial.dimname,sizeof(dimname));
dimname[sizeof(dimname)-1] = '\0';
} else
snprintf(dimname,sizeof(dimname),"maxStrlen%lu",
(unsigned long)dimsize);
sdim = makecdfnode(dapcomm, dimname, OC_Dimension, NULL,
dapcomm->cdf.ddsroot);
if(sdim == NULL) return THROW(NC_ENOMEM);
nclistpush(dapcomm->cdf.ddsroot->tree->nodes,(void*)sdim);
DIMFLAGSET(sdim,CDFDIMSTRING);
sdim->dim.declsize = dimsize;
sdim->dim.declsize0 = dimsize;
sdim->dim.array = var;
sdim->ncbasename = cdflegalname(sdim->ocname);
sdim->ncfullname = nulldup(sdim->ncbasename);
}
/* tag the variable with its string dimension*/
var->array.stringdim = sdim;
}
return NC_NOERR;
}
static NCerror
defrecorddim(NCDAPCOMMON* dapcomm)
{
unsigned int i;
NCerror ncstat = NC_NOERR;
NClist* basedims;
if(dapcomm->cdf.recorddimname == NULL) return NC_NOERR; /* ignore */
/* Locate the base dimension matching the record dim */
basedims = dapcomm->cdf.ddsroot->tree->dimnodes;
for(i=0;i<nclistlength(basedims);i++) {
CDFnode* dim = (CDFnode*)nclistget(basedims,i);
if(strcmp(dim->ocname,dapcomm->cdf.recorddimname) != 0) continue;
DIMFLAGSET(dim,CDFDIMRECORD);
dapcomm->cdf.recorddim = dim;
break;
}
return ncstat;
}
static NCerror
defseqdims(NCDAPCOMMON* dapcomm)
{
unsigned int i = 0;
NCerror ncstat = NC_NOERR;
int seqdims = 1; /* default is to compute seq dims counts */
/* Does the user want to compute actual sequence sizes? */
if(dapparamvalue(dapcomm,"noseqdims")) seqdims = 0;
/*
Compute and define pseudo dimensions for sequences
meeting the following qualifications:
1. all parents (transitively) of the sequence must
be either a dataset or a scalar structure.
2. it must be possible to find a usable sequence constraint.
All other sequences will be ignored.
*/
for(i=0;i<nclistlength(dapcomm->cdf.ddsroot->tree->seqnodes);i++) {
CDFnode* seq = (CDFnode*)nclistget(dapcomm->cdf.ddsroot->tree->seqnodes,i);
size_t seqsize = 0;
CDFnode* sqdim = NULL;
CDFnode* container;
/* Does this sequence match the requirements for use ? */
seq->usesequence = 1; /* assume */
for(container=seq->container;container != NULL;container=container->container) {
if(container->nctype == NC_Dataset) break;
if(container->nctype != NC_Structure
|| nclistlength(container->array.dimset0) > 0)
{seq->usesequence = 0; break;}/* no good */
}
/* Does the user want us to compute the actual sequence dim size? */
if(seq->usesequence && seqdims) {
ncstat = getseqdimsize(dapcomm,seq,&seqsize);
if(ncstat != NC_NOERR) {
/* Cannot read sequence; mark as unusable */
seq->usesequence = 0;
}
} else { /* !seqdims default to size = 1 */
seqsize = 1;
}
if(seq->usesequence) {
/* Note: we are making the dimension in the dds root tree */
ncstat = makeseqdim(dapcomm,seq,seqsize,&sqdim);
if(ncstat) goto fail;
seq->array.seqdim = sqdim;
} else
seq->array.seqdim = NULL;
}
fail:
return ncstat;
}
static NCerror
showprojection(NCDAPCOMMON* dapcomm, CDFnode* var)
{
int i,rank;
NCerror ncstat = NC_NOERR;
NCbytes* projection = ncbytesnew();
NClist* path = nclistnew();
NC* drno = dapcomm->controller;
/* Collect the set of DDS node name forming the xpath */
collectnodepath(var,path,WITHOUTDATASET);
for(i=0;i<nclistlength(path);i++) {
CDFnode* node = (CDFnode*)nclistget(path,i);
if(i > 0) ncbytescat(projection,".");
ncbytescat(projection,node->ocname);
}
nclistfree(path);
/* Now, add the dimension info */
rank = nclistlength(var->array.dimset0);
for(i=0;i<rank;i++) {
CDFnode* dim = (CDFnode*)nclistget(var->array.dimset0,i);
char tmp[32];
ncbytescat(projection,"[");
snprintf(tmp,sizeof(tmp),"%lu",(unsigned long)dim->dim.declsize);
ncbytescat(projection,tmp);
ncbytescat(projection,"]");
}
/* Define the attribute */
ncstat = nc_put_att_text(getncid(drno),var->ncid,
"_projection",
ncbyteslength(projection),
ncbytescontents(projection));
ncbytesfree(projection);
return ncstat;
}
static NCerror
getseqdimsize(NCDAPCOMMON* dapcomm, CDFnode* seq, size_t* sizep)
{
NCerror ncstat = NC_NOERR;
OCerror ocstat = OC_NOERR;
OClink conn = dapcomm->oc.conn;
OCdatanode rootcontent = NULL;
OCddsnode ocroot;
CDFnode* dxdroot;
CDFnode* xseq;
NCbytes* seqcountconstraints = ncbytesnew();
size_t seqsize = 0;
/* Read the minimal amount of data in order to get the count */
/* If the url is unconstrainable, then get the whole thing */
computeseqcountconstraints(dapcomm,seq,seqcountconstraints);
#ifdef DEBUG
fprintf(stderr,"seqcountconstraints: %s\n",ncbytescontents(seqcountconstraints));
#endif
/* Fetch the minimal data */
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE))
ncstat = dap_fetch(dapcomm,conn,NULL,OCDATADDS,&ocroot);
else
ncstat = dap_fetch(dapcomm,conn,ncbytescontents(seqcountconstraints),OCDATADDS,&ocroot);
if(ncstat) goto fail;
ncstat = buildcdftree(dapcomm,ocroot,OCDATA,&dxdroot);
if(ncstat) goto fail;
/* attach DATADDS to DDS */
ncstat = attach(dxdroot,seq);
if(ncstat) goto fail;
/* WARNING: we are now switching to datadds tree */
xseq = seq->attachment;
ncstat = countsequence(dapcomm,xseq,&seqsize);
if(ncstat != NC_NOERR) goto fail;
#ifdef DEBUG
fprintf(stderr,"sequencesize: %s = %lu\n",seq->ocname,(unsigned long)seqsize);
#endif
/* throw away the fetch'd trees */
unattach(dapcomm->cdf.ddsroot);
freecdfroot(dxdroot);
#if 1
/*Note sure what this is doing?*/
if(ncstat != NC_NOERR) {
/* Cannot get DATADDDS*/
char* code;
char* msg;
long httperr;
oc_svcerrordata(dapcomm->oc.conn,&code,&msg,&httperr);
if(code != NULL) {
nclog(NCLOGERR,"oc_fetch_datadds failed: %s %s %l",
code,msg,httperr);
}
ocstat = OC_NOERR;
}
#endif
if(sizep) *sizep = seqsize;
fail:
ncbytesfree(seqcountconstraints);
oc_data_free(conn,rootcontent);
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
return ncstat;
}
static NCerror
makeseqdim(NCDAPCOMMON* dapcomm, CDFnode* seq, size_t count, CDFnode** sqdimp)
{
CDFnode* sqdim;
CDFnode* root = seq->root;
CDFtree* tree = root->tree;
/* build the dimension with given size; keep the dimension anonymous */
sqdim = makecdfnode(dapcomm,seq->ocname,OC_Dimension,NULL,root);
if(sqdim == NULL) return THROW(NC_ENOMEM);
nclistpush(tree->nodes,(void*)sqdim);
/* Assign a name to the sequence node */
sqdim->ncbasename = cdflegalname(seq->ocname);
sqdim->ncfullname = nulldup(sqdim->ncbasename);
DIMFLAGSET(sqdim,CDFDIMSEQ);
sqdim->dim.declsize = count;
sqdim->dim.declsize0 = count;
sqdim->dim.array = seq;
if(sqdimp) *sqdimp = sqdim;
return NC_NOERR;
}
static NCerror
countsequence(NCDAPCOMMON* dapcomm, CDFnode* xseq, size_t* sizep)
{
unsigned int i;
NClist* path = nclistnew();
int index;
OCerror ocstat = OC_NOERR;
NCerror ncstat = NC_NOERR;
OClink conn = dapcomm->oc.conn;
size_t recordcount;
CDFnode* xroot;
OCdatanode data = NULL;
ASSERT((xseq->nctype == NC_Sequence));
/* collect the path to the sequence node */
collectnodepath(xseq,path,WITHDATASET);
/* Get tree root */
ASSERT(xseq->root == (CDFnode*)nclistget(path,0));
xroot = xseq->root;
ocstat = oc_data_getroot(conn,xroot->tree->ocroot,&data);
if(ocstat) goto done;
/* Basically we use the path to walk the data instances to reach
the sequence instance
*/
for(i=0;i<nclistlength(path);i++) {
CDFnode* current = (CDFnode*)nclistget(path,i);
OCdatanode nextdata = NULL;
CDFnode* next = NULL;
/* invariant: current = ith node in path; data = corresponding
datanode
*/
/* get next node in next and next instance in nextdata */
if(current->nctype == NC_Structure
|| current->nctype == NC_Dataset) {
if(nclistlength(current->array.dimset0) > 0) {
/* Cannot handle this case */
ncstat = THROW(NC_EDDS);
goto done;
}
/* get next node in path; structure/dataset => exists */
next = (CDFnode*)nclistget(path,i+1);
index = fieldindex(current,next);
/* Move to appropriate field */
ocstat = oc_data_ithfield(conn,data,index,&nextdata);
if(ocstat) goto done;
oc_data_free(conn,data);
data = nextdata; /* set up for next loop iteration */
} else if(current->nctype == NC_Sequence) {
/* Check for nested Sequences */
if(current != xseq) {
/* Cannot handle this case */
ncstat = THROW(NC_EDDS);
goto done;
}
/* Get the record count */
ocstat = oc_data_recordcount(conn,data,&recordcount);
if(sizep) *sizep = recordcount;
oc_data_free(conn,data); /* reclaim */
break; /* leave the loop */
} else {
PANIC("unexpected mode");
return NC_EINVAL;
}
}
done:
nclistfree(path);
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
return THROW(ncstat);
}
static NCerror
freeNCDAPCOMMON(NCDAPCOMMON* dapcomm)
{
if(dapcomm == NULL) return NC_NOERR;
freenccache(dapcomm,dapcomm->cdf.cache);
nclistfree(dapcomm->cdf.projectedvars);
nullfree(dapcomm->cdf.recorddimname);
/* free the trees */
freecdfroot(dapcomm->cdf.ddsroot);
dapcomm->cdf.ddsroot = NULL;
freecdfroot(dapcomm->cdf.fullddsroot);
dapcomm->cdf.fullddsroot = NULL;
if(dapcomm->oc.ocdasroot != NULL)
oc_root_free(dapcomm->oc.conn,dapcomm->oc.ocdasroot);
dapcomm->oc.ocdasroot = NULL;
oc_close(dapcomm->oc.conn); /* also reclaims remaining OC trees */
ncurifree(dapcomm->oc.url);
nullfree(dapcomm->oc.urltext);
nullfree(dapcomm->oc.rawurltext);
dcefree((DCEnode*)dapcomm->oc.dapconstraint);
dapcomm->oc.dapconstraint = NULL;
/* Note that the ncio layer will figure out that the tmp file needs to be deleted,
so we do not have to do it.
*/
nullfree(dapcomm->substrate.filename); /* always reclaim */
free(dapcomm);
return NC_NOERR;
}
static size_t
fieldindex(CDFnode* parent, CDFnode* child)
{
unsigned int i;
for(i=0;i<nclistlength(parent->subnodes);i++) {
CDFnode* node = (CDFnode*)nclistget(parent->subnodes,i);
if(node == child) return i;
}
return -1;
}
/*
This is more complex than one might think. We want to find
a path to a variable inside the given node so that we can
ask for a single instance of that variable to minimize the
amount of data we retrieve. However, we want to avoid passing
through any nested sequence. This is possible because of the way
that sequencecheck() works.
TODO: some servers will not accept an unconstrained fetch, so
make sure we always have a constraint.
*/
static NCerror
computeseqcountconstraints(NCDAPCOMMON* dapcomm, CDFnode* seq, NCbytes* seqcountconstraints)
{
int i,j;
NClist* path = NULL;
CDFnode* var = NULL;
ASSERT(seq->nctype == NC_Sequence);
computeseqcountconstraintsr(dapcomm,seq,&var);
ASSERT((var != NULL));
/* Compute var path */
path = nclistnew();
collectnodepath(var,path,WITHOUTDATASET);
/* construct the projection path using minimal index values */
for(i=0;i<nclistlength(path);i++) {
CDFnode* node = (CDFnode*)nclistget(path,i);
if(i > 0) ncbytescat(seqcountconstraints,".");
ncbytescat(seqcountconstraints,node->ocname);
if(node == seq) {
/* Use the limit */
if(node->sequencelimit > 0) {
char tmp[64];
snprintf(tmp,sizeof(tmp),"[0:%lu]",
(unsigned long)(node->sequencelimit - 1));
ncbytescat(seqcountconstraints,tmp);
}
} else if(nclistlength(node->array.dimset0) > 0) {
int ndims = nclistlength(node->array.dimset0);
for(j=0;j<ndims;j++) {
CDFnode* dim = (CDFnode*)nclistget(node->array.dimset0,j);
if(DIMFLAG(dim,CDFDIMSTRING)) {
ASSERT((j == (ndims - 1)));
break;
}
ncbytescat(seqcountconstraints,"[0]");
}
}
}
/* Finally, add in any selection from the original URL */
if(dap_getselection(dapcomm->oc.url) != NULL)
ncbytescat(seqcountconstraints,dap_getselection(dapcomm->oc.url));
nclistfree(path);
return NC_NOERR;
}
/* Given an existing candidate, see if we prefer newchoice */
static CDFnode*
prefer(CDFnode* candidate, CDFnode* newchoice)
{
nc_type newtyp;
nc_type cantyp;
int newisstring;
int canisstring;
int newisscalar;
int canisscalar;
/* always choose !null over null */
if(newchoice == NULL)
return candidate;
if(candidate == NULL)
return newchoice;
newtyp = newchoice->etype;
cantyp = candidate->etype;
newisstring = (newtyp == NC_STRING || newtyp == NC_URL);
canisstring = (cantyp == NC_STRING || cantyp == NC_URL);
newisscalar = (nclistlength(newchoice->array.dimset0) == 0);
canisscalar = (nclistlength(candidate->array.dimset0) == 0);
ASSERT(candidate->nctype == NC_Atomic && newchoice->nctype == NC_Atomic);
/* choose non-string over string */
if(canisstring && !newisstring)
return newchoice;
if(!canisstring && newisstring)
return candidate;
/* choose scalar over array */
if(canisscalar && !newisscalar)
return candidate;
if(!canisscalar && newisscalar)
return candidate;
/* otherwise choose existing candidate */
return candidate;
}
/* computeseqcountconstraints recursive helper function */
static void
computeseqcountconstraintsr(NCDAPCOMMON* dapcomm, CDFnode* node, CDFnode** candidatep)
{
CDFnode* candidate;
CDFnode* compound;
unsigned int i;
candidate = NULL;
compound = NULL;
if(node == NULL)
return;
for(i=0;i<nclistlength(node->subnodes);i++) {
CDFnode* subnode = (CDFnode*)nclistget(node->subnodes,i);
if(subnode->nctype == NC_Structure || subnode->nctype == NC_Grid)
compound = subnode; /* save for later recursion */
else if(subnode->nctype == NC_Atomic)
candidate = prefer(candidate,subnode);
}
if(candidate == NULL && compound == NULL) {
PANIC("cannot find candidate for seqcountconstraints for a sequence");
} else if(candidate != NULL && candidatep != NULL) {
*candidatep = candidate;
} else { /* compound != NULL by construction */
/* recurse on a nested grids or strucures */
computeseqcountconstraintsr(dapcomm,compound,candidatep);
}
}
static unsigned long
cdftotalsize(NClist* dimensions)
{
unsigned int i;
unsigned long total = 1;
if(dimensions != NULL) {
for(i=0;i<nclistlength(dimensions);i++) {
CDFnode* dim = (CDFnode*)nclistget(dimensions,i);
total *= dim->dim.declsize;
}
}
return total;
}
/* Estimate variables sizes and then resort the variable list
by that size
*/
static void
estimatevarsizes(NCDAPCOMMON* dapcomm)
{
int ivar;
unsigned int rank;
size_t totalsize = 0;
for(ivar=0;ivar<nclistlength(dapcomm->cdf.ddsroot->tree->varnodes);ivar++) {
CDFnode* var = (CDFnode*)nclistget(dapcomm->cdf.ddsroot->tree->varnodes,ivar);
NClist* ncdims = var->array.dimset0;
rank = nclistlength(ncdims);
if(rank == 0) { /* use instance size of the type */
var->estimatedsize = nctypesizeof(var->etype);
#ifdef DEBUG1
fprintf(stderr,"scalar %s.estimatedsize = %lu\n",
makecdfpathstring(var,"."),var->estimatedsize);
#endif
} else {
unsigned long size = cdftotalsize(ncdims);
size *= nctypesizeof(var->etype);
#ifdef DEBUG1
fprintf(stderr,"array %s(%u).estimatedsize = %lu\n",
makecdfpathstring(var,"."),rank,size);
#endif
var->estimatedsize = size;
}
totalsize += var->estimatedsize;
}
#ifdef DEBUG1
fprintf(stderr,"total estimatedsize = %lu\n",totalsize);
#endif
dapcomm->cdf.totalestimatedsize = totalsize;
}
static NCerror
fetchpatternmetadata(NCDAPCOMMON* dapcomm)
{
NCerror ncstat = NC_NOERR;
OCerror ocstat = OC_NOERR;
OCddsnode ocroot = NULL;
CDFnode* ddsroot = NULL;
char* ce = NULL;
/* Temporary hack: we need to get the selection string
from the url
*/
/* Get (almost) unconstrained DDS; In order to handle functions
correctly, those selections must always be included
*/
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE))
ce = NULL;
else
ce = nulldup(dap_getselection(dapcomm->oc.url));
/* Get selection constrained DDS */
ncstat = dap_fetch(dapcomm,dapcomm->oc.conn,ce,OCDDS,&ocroot);
if(ncstat != NC_NOERR) {
/* Special Hack. If the protocol is file, then see if
we can get the dds from the .dods file
*/
if(strcmp(dapcomm->oc.url->protocol,"file") != 0) {
THROWCHK(ocstat); goto done;
}
/* Fetch the data dds */
ncstat = dap_fetch(dapcomm,dapcomm->oc.conn,ce,OCDATADDS,&ocroot);
if(ncstat != NC_NOERR) {
THROWCHK(ncstat); goto done;
}
/* Note what we did */
nclog(NCLOGWARN,"Cannot locate .dds file, using .dods file");
}
/* Get selection constrained DAS */
ncstat = dap_fetch(dapcomm,dapcomm->oc.conn,ce,OCDAS,&dapcomm->oc.ocdasroot);
if(ncstat != NC_NOERR) {
/* Ignore but complain */
nclog(NCLOGWARN,"Could not read DAS; ignored");
dapcomm->oc.ocdasroot = NULL;
ncstat = NC_NOERR;
}
/* Construct the netcdf cdf tree corresponding to the dds tree*/
ncstat = buildcdftree(dapcomm,ocroot,OCDDS,&ddsroot);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
dapcomm->cdf.fullddsroot = ddsroot;
ddsroot = NULL; /* avoid double reclaim */
/* Combine DDS and DAS */
if(dapcomm->oc.ocdasroot != NULL) {
ncstat = dapmerge(dapcomm,dapcomm->cdf.fullddsroot,
dapcomm->oc.ocdasroot);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto done;}
}
#ifdef DEBUG2
fprintf(stderr,"full pattern:\n%s",dumptree(dapcomm->cdf.fullddsroot));
#endif
done:
nullfree(ce);
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
return ncstat;
}
static NCerror
fetchconstrainedmetadata(NCDAPCOMMON* dapcomm)
{
NCerror ncstat = NC_NOERR;
OCerror ocstat = OC_NOERR;
OCddsnode ocroot;
CDFnode* ddsroot; /* constrained */
char* ce = NULL;
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE))
ce = NULL;
else
ce = dcebuildconstraintstring(dapcomm->oc.dapconstraint);
{
ncstat = dap_fetch(dapcomm,dapcomm->oc.conn,ce,OCDDS,&ocroot);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
/* Construct our parallel dds tree; including attributes*/
ncstat = buildcdftree(dapcomm,ocroot,OCDDS,&ddsroot);
if(ncstat) goto fail;
ocroot = NULL; /* avoid duplicate reclaim */
dapcomm->cdf.ddsroot = ddsroot;
ddsroot = NULL; /* to avoid double reclamation */
if(!FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE)) {
/* fix DAP server problem by adding back any inserting needed structure nodes */
ncstat = restruct(dapcomm, dapcomm->cdf.ddsroot,dapcomm->cdf.fullddsroot,dapcomm->oc.dapconstraint->projections);
if(ncstat) goto fail;
}
#ifdef DEBUG2
fprintf(stderr,"constrained:\n%s",dumptree(dapcomm->cdf.ddsroot));
#endif
/* Combine DDS and DAS */
if(dapcomm->oc.ocdasroot != NULL) {
ncstat = dapmerge(dapcomm,dapcomm->cdf.ddsroot,
dapcomm->oc.ocdasroot);
if(ncstat != NC_NOERR) {THROWCHK(ncstat); goto fail;}
}
/* map the constrained DDS to the unconstrained DDS */
ncstat = mapnodes(dapcomm->cdf.ddsroot,dapcomm->cdf.fullddsroot);
if(ncstat) goto fail;
}
fail:
nullfree(ce);
if(ocstat != OC_NOERR) ncstat = ocerrtoncerr(ocstat);
return ncstat;
}
/* Suppress variables not in usable sequences*/
static NCerror
suppressunusablevars(NCDAPCOMMON* dapcomm)
{
int i,j;
int found = 1;
NClist* path = nclistnew();
while(found) {
found = 0;
/* Walk backwards to aid removal semantics */
for(i=nclistlength(dapcomm->cdf.ddsroot->tree->varnodes)-1;i>=0;i--) {
CDFnode* var = (CDFnode*)nclistget(dapcomm->cdf.ddsroot->tree->varnodes,i);
/* See if this var is under an unusable sequence */
nclistclear(path);
collectnodepath(var,path,WITHOUTDATASET);
for(j=0;j<nclistlength(path);j++) {
CDFnode* node = (CDFnode*)nclistget(path,j);
if(node->nctype == NC_Sequence
&& !node->usesequence) {
#ifdef DEBUG
fprintf(stderr,"suppressing var in unusable sequence: %s.%s\n",node->ncfullname,var->ncbasename);
#endif
found = 1;
break;
}
}
if(found) break;
}
if(found) nclistremove(dapcomm->cdf.ddsroot->tree->varnodes,i);
}
nclistfree(path);
return NC_NOERR;
}
/*
For variables which have a zero size dimension,
make them invisible.
*/
static NCerror
fixzerodims(NCDAPCOMMON* dapcomm)
{
int i,j;
for(i=0;i<nclistlength(dapcomm->cdf.ddsroot->tree->varnodes);i++) {
CDFnode* var = (CDFnode*)nclistget(dapcomm->cdf.ddsroot->tree->varnodes,i);
NClist* ncdims = var->array.dimsetplus;
if(nclistlength(ncdims) == 0) continue;
for(j=0;j<nclistlength(ncdims);j++) {
CDFnode* dim = (CDFnode*)nclistget(ncdims,j);
if(dim->dim.declsize == 0) {
/* make node invisible */
var->invisible = 1;
var->zerodim = 1;
}
}
}
return NC_NOERR;
}
static void
applyclientparamcontrols(NCDAPCOMMON* dapcomm)
{
/* clear the flags */
CLRFLAG(dapcomm->controls,NCF_CACHE);
CLRFLAG(dapcomm->controls,NCF_SHOWFETCH);
CLRFLAG(dapcomm->controls,NCF_NC3);
CLRFLAG(dapcomm->controls,NCF_NCDAP);
CLRFLAG(dapcomm->controls,NCF_PREFETCH);
CLRFLAG(dapcomm->controls,NCF_PREFETCH_EAGER);
/* Turn on any default on flags */
SETFLAG(dapcomm->controls,DFALT_ON_FLAGS);
SETFLAG(dapcomm->controls,(NCF_NC3|NCF_NCDAP));
/* enable/disable caching */
if(dapparamcheck(dapcomm,"cache",NULL))
SETFLAG(dapcomm->controls,NCF_CACHE);
else if(dapparamcheck(dapcomm,"nocache",NULL))
CLRFLAG(dapcomm->controls,NCF_CACHE);
/* enable/disable cache prefetch and lazy vs eager*/
if(dapparamcheck(dapcomm,"prefetch","eager")) {
SETFLAG(dapcomm->controls,NCF_PREFETCH);
SETFLAG(dapcomm->controls,NCF_PREFETCH_EAGER);
} else if(dapparamcheck(dapcomm,"prefetch","lazy")
|| dapparamcheck(dapcomm,"prefetch",NULL)) {
SETFLAG(dapcomm->controls,NCF_PREFETCH);
CLRFLAG(dapcomm->controls,NCF_PREFETCH_EAGER);
} else if(dapparamcheck(dapcomm,"noprefetch",NULL))
CLRFLAG(dapcomm->controls,NCF_PREFETCH);
if(FLAGSET(dapcomm->controls,NCF_UNCONSTRAINABLE))
SETFLAG(dapcomm->controls,NCF_CACHE);
if(dapparamcheck(dapcomm,"show","fetch"))
SETFLAG(dapcomm->controls,NCF_SHOWFETCH);
nclog(NCLOGNOTE,"Caching=%d",FLAGSET(dapcomm->controls,NCF_CACHE));
}
/*
Force dap2 access to be read-only
*/
int
NCD2_set_fill(int ncid, int fillmode, int* old_modep)
{
return THROW(NC_EPERM);
}
int
NCD2_set_base_pe(int ncid, int pe)
{
return THROW(NC_EPERM);
}
int
NCD2_def_dim(int ncid, const char* name, size_t len, int* idp)
{
return THROW(NC_EPERM);
}
int
NCD2_put_att(int ncid, int varid, const char* name, nc_type datatype,
size_t len, const void* value, nc_type t)
{
return THROW(NC_EPERM);
}
int
NCD2_def_var(int ncid, const char *name,
nc_type xtype, int ndims, const int *dimidsp, int *varidp)
{
return THROW(NC_EPERM);
}
/*
Following functions basically return the netcdf-3 value WRT to the nc3id.
*/
int
NCD2_inq_base_pe(int ncid, int* pe)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_base_pe(getnc3id(drno), pe);
return THROW(ret);
}
int
NCD2_inq_format(int ncid, int* formatp)
{
NC* drno;
int ret = NC_NOERR;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_format(getnc3id(drno), formatp);
return THROW(ret);
}
int
NCD2_inq(int ncid, int* ndimsp, int* nvarsp, int* nattsp, int* unlimdimidp)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq(getnc3id(drno), ndimsp, nvarsp, nattsp, unlimdimidp);
return THROW(ret);
}
int
NCD2_inq_type(int ncid, nc_type p2, char* p3, size_t* p4)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_type(getnc3id(drno), p2, p3, p4);
return THROW(ret);
}
int
NCD2_inq_dimid(int ncid, const char* name, int* idp)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_dimid(getnc3id(drno), name, idp);
return THROW(ret);
}
int
NCD2_inq_dim(int ncid, int dimid, char* name, size_t* lenp)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_dim(getnc3id(drno), dimid, name, lenp);
return THROW(ret);
}
int
NCD2_inq_unlimdim(int ncid, int* unlimdimidp)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_unlimdim(getnc3id(drno), unlimdimidp);
return THROW(ret);
}
int
NCD2_rename_dim(int ncid, int dimid, const char* name)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_rename_dim(getnc3id(drno), dimid, name);
return THROW(ret);
}
int
NCD2_inq_att(int ncid, int varid, const char* name,
nc_type* xtypep, size_t* lenp)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_att(getnc3id(drno), varid, name, xtypep, lenp);
return THROW(ret);
}
int
NCD2_inq_attid(int ncid, int varid, const char *name, int *idp)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_attid(getnc3id(drno), varid, name, idp);
return THROW(ret);
}
int
NCD2_inq_attname(int ncid, int varid, int attnum, char* name)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_attname(getnc3id(drno), varid, attnum, name);
return THROW(ret);
}
int
NCD2_rename_att(int ncid, int varid, const char* name, const char* newname)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_rename_att(getnc3id(drno), varid, name, newname);
return THROW(ret);
}
int
NCD2_del_att(int ncid, int varid, const char* p3)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_del_att(getnc3id(drno), varid, p3);
return THROW(ret);
}
int
NCD2_get_att(int ncid, int varid, const char* name, void* value, nc_type t)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = NCDISPATCH_get_att(getnc3id(drno), varid, name, value, t);
return THROW(ret);
}
int
NCD2_inq_var_all(int ncid, int varid, char *name, nc_type* xtypep,
int* ndimsp, int* dimidsp, int* nattsp,
int* shufflep, int* deflatep, int* deflate_levelp,
int* fletcher32p, int* contiguousp, size_t* chunksizesp,
int* no_fill, void* fill_valuep, int* endiannessp,
unsigned int* idp, size_t* nparamsp, unsigned int* params
)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = NCDISPATCH_inq_var_all(getnc3id(drno), varid, name, xtypep,
ndimsp, dimidsp, nattsp,
shufflep, deflatep, deflate_levelp,
fletcher32p, contiguousp, chunksizesp,
no_fill, fill_valuep, endiannessp,
idp,nparamsp,params
);
return THROW(ret);
}
int
NCD2_inq_varid(int ncid, const char *name, int *varidp)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_varid(getnc3id(drno),name,varidp);
return THROW(ret);
}
int
NCD2_rename_var(int ncid, int varid, const char* name)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_rename_var(getnc3id(drno), varid, name);
return THROW(ret);
}
int
NCD2_var_par_access(int ncid, int p2, int p3)
{
return THROW(NC_ENOPAR);
}
#ifdef USE_NETCDF4
int
NCD2_inq_ncid(int ncid, const char* name, int* grp_ncid)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_ncid(getnc3id(drno), name, grp_ncid);
return THROW(ret);
}
int
NCD2_show_metadata(int ncid)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_show_metadata(getnc3id(drno));
return THROW(ret);
}
int
NCD2_inq_grps(int ncid, int* p2, int* p3)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_grps(getnc3id(drno), p2, p3);
return THROW(ret);
}
int
NCD2_inq_grpname(int ncid, char* p)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_grpname(getnc3id(drno), p);
return THROW(ret);
}
int
NCD2_inq_unlimdims(int ncid, int* p2, int* p3)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_unlimdims(getnc3id(drno), p2, p3);
return THROW(ret);
}
int
NCD2_inq_grpname_full(int ncid, size_t* p2, char* p3)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_grpname_full(getnc3id(drno), p2, p3);
return THROW(ret);
}
int
NCD2_inq_grp_parent(int ncid, int* p)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_grp_parent(getnc3id(drno), p);
return THROW(ret);
}
int
NCD2_inq_grp_full_ncid(int ncid, const char* p2, int* p3)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_grp_full_ncid(getnc3id(drno), p2, p3);
return THROW(ret);
}
int
NCD2_inq_varids(int ncid, int* nvars, int* p)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_varids(getnc3id(drno), nvars, p);
return THROW(ret);
}
int
NCD2_inq_dimids(int ncid, int* ndims, int* p3, int p4)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_dimids(getnc3id(drno), ndims, p3, p4);
return THROW(ret);
}
int
NCD2_inq_typeids(int ncid, int* ntypes, int* p)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_typeids(getnc3id(drno), ntypes, p);
return THROW(ret);
}
int
NCD2_inq_type_equal(int ncid, nc_type t1, int p3, nc_type t2, int* p5)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_type_equal(getnc3id(drno), t1, p3, t2, p5);
return THROW(ret);
}
int
NCD2_inq_user_type(int ncid, nc_type t, char* p3, size_t* p4, nc_type* p5,
size_t* p6, int* p7)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_user_type(getnc3id(drno), t, p3, p4, p5, p6, p7);
return THROW(ret);
}
int
NCD2_inq_typeid(int ncid, const char* name, nc_type* t)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_typeid(getnc3id(drno), name, t);
return THROW(ret);
}
int
NCD2_def_grp(int ncid, const char* p2, int* p3)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_grp(getnc3id(drno), p2, p3);
return THROW(ret);
}
int
NCD2_rename_grp(int ncid, const char* p)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_rename_grp(getnc3id(drno), p);
return THROW(ret);
}
int
NCD2_def_compound(int ncid, size_t p2, const char* p3, nc_type* t)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_compound(getnc3id(drno), p2, p3, t);
return THROW(ret);
}
int
NCD2_insert_compound(int ncid, nc_type t1, const char* p3, size_t p4, nc_type t2)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_insert_compound(getnc3id(drno), t1, p3, p4, t2);
return THROW(ret);
}
int
NCD2_insert_array_compound(int ncid, nc_type t1, const char* p3, size_t p4,
nc_type t2, int p6, const int* p7)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_insert_array_compound(getnc3id(drno), t1, p3, p4, t2, p6, p7);
return THROW(ret);
}
int
NCD2_inq_compound_field(int ncid, nc_type xtype, int fieldid, char *name,
size_t *offsetp, nc_type* field_typeidp, int *ndimsp,
int *dim_sizesp)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_compound_field(getnc3id(drno), xtype, fieldid, name, offsetp, field_typeidp, ndimsp, dim_sizesp);
return THROW(ret);
}
int
NCD2_inq_compound_fieldindex(int ncid, nc_type xtype, const char *name,
int *fieldidp)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_compound_fieldindex(getnc3id(drno), xtype, name, fieldidp);
return THROW(ret);
}
int
NCD2_def_vlen(int ncid, const char* p2, nc_type base_typeid, nc_type* t)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_vlen(getnc3id(drno), p2, base_typeid, t);
return THROW(ret);
}
int
NCD2_put_vlen_element(int ncid, int p2, void* p3, size_t p4, const void* p5)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_put_vlen_element(getnc3id(drno), p2, p3, p4, p5);
return THROW(ret);
}
int
NCD2_get_vlen_element(int ncid, int p2, const void* p3, size_t* p4, void* p5)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_get_vlen_element(getnc3id(drno), p2, p3, p4, p5);
return THROW(ret);
}
int
NCD2_def_enum(int ncid, nc_type t1, const char* p3, nc_type* t)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_enum(getnc3id(drno), t1, p3, t);
return THROW(ret);
}
int
NCD2_insert_enum(int ncid, nc_type t1, const char* p3, const void* p4)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_insert_enum(getnc3id(drno), t1, p3, p4);
return THROW(ret);
}
int
NCD2_inq_enum_member(int ncid, nc_type t1, int p3, char* p4, void* p5)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_enum_member(getnc3id(drno), t1, p3, p4, p5);
return THROW(ret);
}
int
NCD2_inq_enum_ident(int ncid, nc_type t1, long long p3, char* p4)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_inq_enum_ident(getnc3id(drno), t1, p3, p4);
return THROW(ret);
}
int
NCD2_def_opaque(int ncid, size_t p2, const char* p3, nc_type* t)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_opaque(getnc3id(drno), p2, p3, t);
return THROW(ret);
}
int
NCD2_def_var_deflate(int ncid, int p2, int p3, int p4, int p5)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_var_deflate(getnc3id(drno), p2, p3, p4, p5);
return THROW(ret);
}
int
NCD2_def_var_fletcher32(int ncid, int p2, int p3)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_var_fletcher32(getnc3id(drno), p2, p3);
return THROW(ret);
}
int
NCD2_def_var_chunking(int ncid, int p2, int p3, const size_t* p4)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_var_chunking(getnc3id(drno), p2, p3, p4);
return THROW(ret);
}
int
NCD2_def_var_fill(int ncid, int p2, int p3, const void* p4)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_var_fill(getnc3id(drno), p2, p3, p4);
return THROW(ret);
}
int
NCD2_def_var_endian(int ncid, int p2, int p3)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_var_endian(getnc3id(drno), p2, p3);
return THROW(ret);
}
int
NCD2_def_var_filter(int ncid, int varid, unsigned int id, size_t n, const unsigned int* params)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_def_var_filter(getnc3id(drno), varid, id, n, params);
return THROW(ret);
}
int
NCD2_set_var_chunk_cache(int ncid, int p2, size_t p3, size_t p4, float p5)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_set_var_chunk_cache(getnc3id(drno), p2, p3, p4, p5);
return THROW(ret);
}
int
NCD2_get_var_chunk_cache(int ncid, int p2, size_t* p3, size_t* p4, float* p5)
{
NC* drno;
int ret;
if((ret = NC_check_id(ncid, (NC**)&drno)) != NC_NOERR) return THROW(ret);
ret = nc_get_var_chunk_cache(getnc3id(drno), p2, p3, p4, p5);
return THROW(ret);
}
#endif // USE_NETCDF4
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