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netcdf-c/nc_test4
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Dennis Heimbigner 2f0a6d22e9 Fix error where not converting fill data 
re: Github Issue https://github.com/Unidata/netcdf-c/issues/1826

It turns out that the common get code (NC4_get_vars) in libhdf5
(and libnczarr) has an optimization where it does not attempt to
read from the file if the file is all fill values. Rather it
just fills the output buffer with the fill value.  The problem
is that -- in that case -- it forgets that conversion might still be
needed.  So the conversion never occurs and the raw bits of
the fill data are stored directly into the memory space.

Solution: move some code around to properly do the
conversion no matter how the data was obtained.

Added a test cases nc_test4/test_fillonly.sh and
nczarr_test/test_fillonlyz.sh
2020-09-12 14:49:59 -06:00
..
bm_chunking.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
bm_radar.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
bzip2.cdl
cdm_sea_soundings.c Spelling fixes 2019-09-18 08:03:01 -06:00
clear_cache.sh Swapped /bin/bash for /bin/sh to test on osx. 2018-08-12 23:01:08 -06:00
CMakeLists.txt Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
findplugin.in Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
h5testszip.c took config include out of h5testszip 2019-01-02 06:46:56 -07:00
Makefile.am Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
ref_bzip2.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
ref_fillonly.cdl Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
ref_filter_order.txt Allow redefinition of variable filters 2020-05-11 09:42:31 -06:00
ref_filter_repeat.txt Allow redefinition of variable filters 2020-05-11 09:42:31 -06:00
ref_filtered.cdl Renamed the baseline files for tst_filter.sh 2019-02-09 15:14:13 -07:00
ref_filteredvv.cdl Fix nc_test4/tst_filter.sh for big endian 2019-02-24 22:20:01 -07:00
ref_hdf5_compat1.nc
ref_hdf5_compat2.nc
ref_hdf5_compat3.nc
ref_multi.cdl Add support for multiple filters per variable. 2020-02-16 12:59:33 -07:00
ref_nccopyF.cdl Add support for multiple filters per variable. 2020-02-16 12:59:33 -07:00
ref_ncgenF.cdl Add support for multiple filters per variable. 2020-02-16 12:59:33 -07:00
ref_szip.cdl
ref_szip.h5
ref_tst_compounds.nc
ref_tst_dims.nc
ref_tst_interops4.nc
ref_tst_xplatform2_1.nc
ref_tst_xplatform2_2.nc
ref_unfiltered.cdl Renamed the baseline files for tst_filter.sh 2019-02-09 15:14:13 -07:00
ref_unfilteredvv.cdl Renamed the baseline files for tst_filter.sh 2019-02-09 15:14:13 -07:00
renamegroup.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
run_empty_vlen_test.sh
run_grp_rename.sh Provide byte-range reading of remote datasets 2019-01-01 18:27:36 -07:00
run_par_test.sh.in fixed warnings in tst_create_files.c 2020-06-30 10:40:05 -06:00
t_type.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tdset.h5
test_fillonly.sh Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
test_filter_misc.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
test_filter_order.c Allow redefinition of variable filters 2020-05-11 09:42:31 -06:00
test_filter_reg.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
test_filter_repeat.c Allow redefinition of variable filters 2020-05-11 09:42:31 -06:00
test_filter.c
test_szip.c Add support for multiple filters per variable. 2020-02-16 12:59:33 -07:00
test_wrapper.in
tst_atts1.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_atts2.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_atts3.c merge master and fix conflicts 2018-12-12 11:47:54 -07:00
tst_atts_string_rewrite.c more config.h includes for tests 2019-01-02 05:37:54 -07:00
tst_atts.c Add regression tests modifying attributes 2^16 times 2019-11-13 10:08:31 -09:00
tst_bug324.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_bug1442.c tst_bug1442: improve test to retrieve a mix of valid values and values at fillvalue 2019-07-18 03:05:20 +02:00
tst_camrun.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_chunks2.c Spelling fixes 2019-09-18 08:03:01 -06:00
tst_chunks.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_compounds2.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_compounds3.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_compounds.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_converts2.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_converts.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
tst_coords2.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_coords3.c now using hidden coordinates att to speed file opens 2018-12-20 05:59:31 -07:00
tst_coords.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_dims2.c Fix undefined references when using Visual Studio 2020-05-18 19:36:28 -06:00
tst_dims3.c more tests 2019-12-01 15:05:43 -07:00
tst_dims.c Spelling fixes 2019-09-18 08:03:01 -06:00
tst_elatefill.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_empty_vlen_unlim.c Separate out the --ansi comment fixes. 2018-12-12 13:23:09 -07:00
tst_endian_fill.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_enums.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_files4.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_files5.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_files6.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_files.c now dont return error on second redef call for netcdf/HDF5 files 2020-07-08 11:10:15 -06:00
tst_fill_attr_vanish.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_fillbug.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_fillonly.c Fix error where not converting fill data 2020-09-12 14:49:59 -06:00
tst_fills2.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_fills.c Fix undefined references when using Visual Studio 2020-05-18 19:36:28 -06:00
tst_filter_order.sh This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
tst_filter.sh This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
tst_filterparser.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
tst_grps2.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_grps.c lazy read of some var metadata 2018-12-18 07:48:22 -07:00
tst_h5_endians.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_h_converts.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_h_refs.c lazy read of some var metadata 2018-12-18 07:48:22 -07:00
tst_h_scalar.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_h_strbug.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_h_strings3.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_h_vl2.c Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. 2020-02-20 17:24:29 -06:00
tst_hdf5_file_compat.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_interops4.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_interops5.c changed test filename to one that will be cleaned 2019-12-01 08:47:46 -07:00
tst_interops6.c cleaned up test handling of strings 2019-11-14 09:39:10 -07:00
tst_interops_dims.c another test for two anon dimensions of same size used in same HDF5 var 2019-11-14 07:23:09 -07:00
tst_interops.c cleaned up makefile.am, added config.h to some tests 2019-01-02 05:31:15 -07:00
tst_large2.c fixed warnings in tst_large2.c 2019-05-21 15:24:56 -06:00
tst_large3.c Spelling fixes 2019-09-18 08:03:01 -06:00
tst_large5.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_large.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_misc.sh
tst_mode.c fixed tst_mode to not attempt to set filters on scalars 2020-03-03 07:44:37 -07:00
tst_mpi_parallel.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_multifilter.c Add support for multiple filters per variable. 2020-02-16 12:59:33 -07:00
tst_nc4perf.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_nc_converts.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_opaques.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_parallel3.c remove some debug statements 2019-02-01 14:39:30 -07:00
tst_parallel4.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_parallel5.c fixed warning in tst_parallel5.c 2020-07-08 12:24:48 -06:00
tst_parallel_compress.c fixed problem setting szip on var with unlimited dim and added test 2020-07-02 10:55:34 -06:00
tst_parallel_zlib.c start using par filters in HDF5-1.10.3 2020-01-17 14:01:07 -07:00
tst_parallel.c more work on tst_parallel5.c 2019-08-14 08:50:09 -06:00
tst_put_vars_two_unlim_dim.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_put_vars.c more config.h includes for tests 2019-01-02 05:37:54 -07:00
tst_rehash.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_rename2.c fixed warnings in tst_rename2 2019-05-21 15:16:35 -06:00
tst_rename3.c Spelling fixes 2019-09-18 08:03:01 -06:00
tst_rename.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_simplerw_coll_r.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_strings2.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_strings.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_sync.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_szip.sh
tst_types.c merge master and fix conflicts 2018-12-12 11:47:54 -07:00
tst_udf.c Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
tst_unlim_vars.c more checking in 3D test 2020-02-12 08:21:52 -07:00
tst_utf8.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_v2.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_varms.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_vars2.c This PR adds EXPERIMENTAL support for accessing data in the 2020-06-28 18:02:47 -06:00
tst_vars3.c Add support for multiple filters per variable. 2020-02-16 12:59:33 -07:00
tst_vars4.c Fix conflicts with master 2020-02-27 14:06:45 -07:00
tst_vars.c added demonstration of nc_def_var_deflate() issue 2020-05-07 07:08:52 -06:00
tst_varsperf.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_vl.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00
tst_xplatform2.c Updated H5Oget_info* and H5Oinfo_t to be compatible with HDF5 1.12.0. 2020-02-20 17:24:29 -06:00
tst_xplatform.c Whew! Updated copyright stanza in nc_test4. 2018-12-06 15:27:32 -07:00