mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-12-21 08:39:46 +08:00
545ce88476
Updating Doxyfile.in with doxygen-1.8.17, turned on WARN_AS_ERROR, added doxygen build to CI run
557 lines
18 KiB
YAML
557 lines
18 KiB
YAML
###
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# Build hdf4, hdf5 dependencies and cache them in a combined directory.
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###
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name: Run Ubuntu/Linux netCDF Tests
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on: [pull_request, workflow_dispatch]
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jobs:
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build-deps-serial:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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hdf5: [ 1.8.22, 1.10.8, 1.12.1 ]
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steps:
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- uses: actions/checkout@v2
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- name: Install System dependencies
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shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen
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###
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# Installing libhdf4 and libhdf5
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###
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- name: Cache libhdf5-${{ matrix.hdf5 }}
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id: cache-hdf5
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Build libhdf5-${{ matrix.hdf5 }}
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if: steps.cache-hdf5.outputs.cache-hit != 'true'
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run: |
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set -x
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wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2
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tar -jxf hdf-4.2.15.tar.bz2
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pushd hdf-4.2.15
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./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib
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make -j
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make install -j
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popd
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
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tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
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pushd hdf5-${{ matrix.hdf5 }}
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./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib
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make -j
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make install -j
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popd
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build-deps-parallel:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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hdf5: [ 1.12.1 ]
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steps:
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- uses: actions/checkout@v2
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- name: Install System dependencies
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shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev
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###
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# Installing libhdf4 and libhdf5
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###
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- name: Cache libhdf5-parallel-${{ matrix.hdf5 }}
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id: cache-hdf5
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Build libhdf5-${{ matrix.hdf5 }}-pnetcdf-1.12.3
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if: steps.cache-hdf5.outputs.cache-hit != 'true'
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run: |
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set -x
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wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2
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tar -jxf hdf-4.2.15.tar.bz2
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pushd hdf-4.2.15
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CC=mpicc ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-parallel
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make -j
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make install -j
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popd
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
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tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
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pushd hdf5-${{ matrix.hdf5 }}
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CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib --enable-parallel
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make -j
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make install -j
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popd
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wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz
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tar -zxf pnetcdf-1.12.3.tar.gz
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pushd pnetcdf-1.12.3
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CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}
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make -j
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make install -j
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popd
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#####
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# One-Off Autotools-based tests.
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#####
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##
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# Serial
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##
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nc-ac-tests-oneoff-serial:
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needs: build-deps-serial
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runs-on: ubuntu-latest
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strategy:
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matrix:
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hdf5: [ 1.12.1 ]
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steps:
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- uses: actions/checkout@v2
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- name: Install System dependencies
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shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen
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###
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# Set Environmental Variables
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###
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- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
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- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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###
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# Fetch Cache
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###
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- name: Fetch HDF Cache
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id: cache-hdf
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Check Cache
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shell: bash -l {0}
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run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
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###
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# Configure and build
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###
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- name: Run autoconf
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shell: bash -l {0}
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run: autoreconf -if
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- name: Configure
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --enable-hdf4 --enable-hdf5 --enable-dap --disable-dap-remote-tests --enable-doxygen
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if: ${{ success() }}
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- name: Look at config.log if error
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shell: bash -l {0}
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run: cat config.log
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if: ${{ failure() }}
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- name: Print Summary
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shell: bash -l {0}
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run: cat libnetcdf.settings
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- name: Build Library and Utilities
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
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if: ${{ success() }}
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- name: Build Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
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if: ${{ success() }}
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- name: Run Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
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if: ${{ success() }}
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##
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# Parallel
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##
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nc-ac-tests-oneoff-parallel:
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needs: build-deps-parallel
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runs-on: ubuntu-latest
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strategy:
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matrix:
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hdf5: [ 1.12.1 ]
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steps:
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- uses: actions/checkout@v2
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- name: Install System dependencies
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shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev
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###
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# Set Environmental Variables
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###
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- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
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- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- name: Fetch HDF Cache
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id: cache-hdf
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Check Cache
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shell: bash -l {0}
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run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
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###
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# Configure and build
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###
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- name: Run autoconf
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shell: bash -l {0}
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run: autoreconf -if
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- name: Configure
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc ./configure --enable-hdf4 --enable-hdf5 --enable-dap --disable-dap-remote-tests --enable-parallel-tests --enable-pnetcdf
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if: ${{ success() }}
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- name: Look at config.log if error
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shell: bash -l {0}
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run: cat config.log
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if: ${{ failure() }}
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- name: Print Summary
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shell: bash -l {0}
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run: cat libnetcdf.settings
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- name: Build Library and Utilities
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make -j
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if: ${{ success() }}
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- name: Build Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check TESTS="" -j
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if: ${{ success() }}
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- name: Run Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check -j
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if: ${{ success() }}
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#####
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# One-Off CMake-based tests.
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#####
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##
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# Serial
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##
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nc-cmake-tests-oneoff-serial:
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needs: build-deps-serial
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runs-on: ubuntu-latest
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strategy:
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matrix:
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hdf5: [ 1.12.1 ]
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steps:
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- uses: actions/checkout@v2
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- name: Install System dependencies
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shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen
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###
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# Set Environmental Variables
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###
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- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
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- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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###
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# Fetch Cache
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###
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- name: Fetch HDF Cache
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id: cache-hdf5
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Check Cache
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shell: bash -l {0}
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run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
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###
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# Configure and build
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###
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- name: Perform out-of-directory build
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shell: bash -l {0}
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run: |
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mkdir build
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DENABLE_HDF4=TRUE -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=TRUE -DENABLE_HDF5=TRUE -DENABLE_NCZARR=TRUE -D ENABLE_DAP_LONG_TESTS=TRUE
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- name: Print Summary
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shell: bash -l {0}
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run: |
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cd build
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cat libnetcdf.settings
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- name: Build All
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
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if: ${{ success() }}
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- name: Run Tests
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --output-on-failure -j 12 .
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if: ${{ success() }}
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- name: Verbose Output if CTest Failure
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shell: bash -l {0}
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run: |
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cd build
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LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
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if: ${{ failure() }}
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nc-autotools:
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needs: [ nc-cmake-tests-oneoff-serial, nc-ac-tests-oneoff-serial ]
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runs-on: ubuntu-latest
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strategy:
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matrix:
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hdf5: [ 1.8.22, 1.10.8, 1.12.1 ]
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use_nc4: [ nc3, nc4 ]
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use_dap: [ dap_off, dap_on ]
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use_nczarr: [ nczarr_off, nczarr_on ]
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steps:
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- uses: actions/checkout@v2
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- name: Install System dependencies
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shell: bash -l {0}
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run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
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###
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# Set Environmental Variables
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###
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- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV
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- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
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- run: |
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echo "ENABLE_HDF4=--disable-hdf4" >> $GITHUB_ENV
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echo "ENABLE_HDF5=--disable-hdf5" >> $GITHUB_ENV
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if: matrix.use_nc4 == 'nc3'
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- run: |
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echo "ENABLE_HDF4=--enable-hdf4" >> $GITHUB_ENV
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echo "ENABLE_HDF5=--enable-hdf5" >> $GITHUB_ENV
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if: matrix.use_nc4 == 'nc4'
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- run: echo "ENABLE_DAP=--disable-dap" >> $GITHUB_ENV
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if: matrix.use_dap == 'dap_off'
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- run: echo "ENABLE_DAP=--enable-dap" >> $GITHUB_ENV
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if: matrix.use_dap == 'dap_on'
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- run: echo "ENABLE_NCZARR=--disable-nczarr" >> $GITHUB_ENV
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if: matrix.use_nczarr == 'nczarr_off'
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- run: echo "ENABLE_NCZARR=--enable-nczarr" >> $GITHUB_ENV
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if: matrix.use_nczarr == 'nczarr_on'
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###
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# Fetch Cache
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###
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- name: Fetch HDF Cache
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id: cache-hdf
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uses: actions/cache@v2
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with:
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path: ~/environments/${{ matrix.hdf5 }}
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key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
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- name: Check Cache
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shell: bash -l {0}
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run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
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###
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# Configure and build
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###
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- name: Run autoconf
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shell: bash -l {0}
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run: autoreconf -if
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- name: Configure
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure ${ENABLE_HDF4} ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}
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if: ${{ success() }}
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- name: Look at config.log if error
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shell: bash -l {0}
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run: cat config.log
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if: ${{ failure() }}
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- name: Print Summary
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shell: bash -l {0}
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run: cat libnetcdf.settings
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- name: Build Library and Utilities
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
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if: ${{ success() }}
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- name: Build Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
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if: ${{ success() }}
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- name: Run Tests
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shell: bash -l {0}
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run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
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if: ${{ success() }}
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# - name: Make Distcheck
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# shell: bash -l {0}
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# run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} DISTCHECK_CONFIGURE_FLAGS="${ENABLE_HDF4} ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}" make distcheck
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# if: ${{ success() }}
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#- name: Start SSH Debug
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# uses: luchihoratiu/debug-via-ssh@main
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# with:
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# NGROK_AUTH_TOKEN: ${{ secrets.NGROK_AUTH_TOKEN }}
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# SSH_PASS: ${{ secrets.SSH_PASS }}
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# if: ${{ failure() }}
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nc-cmake:
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needs: [ nc-cmake-tests-oneoff-serial, nc-ac-tests-oneoff-serial ]
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runs-on: ubuntu-latest
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|
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strategy:
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matrix:
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hdf5: [ 1.8.22, 1.10.8, 1.12.1 ]
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use_nc4: [ nc3, nc4 ]
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use_dap: [ dap_off, dap_on ]
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use_nczarr: [ nczarr_off, nczarr_on ]
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steps:
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- uses: actions/checkout@v2
|
|
|
|
- name: Install System dependencies
|
|
shell: bash -l {0}
|
|
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev
|
|
|
|
###
|
|
# Set Environmental Variables
|
|
###
|
|
|
|
- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV
|
|
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV
|
|
- run: |
|
|
echo "ENABLE_HDF4=OFF" >> $GITHUB_ENV
|
|
echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV
|
|
if: matrix.use_nc4 == 'nc3'
|
|
- run: |
|
|
echo "ENABLE_HDF4=ON" >> $GITHUB_ENV
|
|
echo "ENABLE_HDF5=ON" >> $GITHUB_ENV
|
|
if: matrix.use_nc4 == 'nc4'
|
|
- run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV
|
|
if: matrix.use_dap == 'dap_off'
|
|
- run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV
|
|
if: matrix.use_dap == 'dap_on'
|
|
- run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV
|
|
if: matrix.use_nczarr == 'nczarr_off'
|
|
- run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV
|
|
if: matrix.use_nczarr == 'nczarr_on'
|
|
- run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV
|
|
|
|
###
|
|
# Fetch Cache
|
|
###
|
|
|
|
- name: Fetch HDF Cache
|
|
id: cache-hdf5
|
|
uses: actions/cache@v2
|
|
with:
|
|
path: ~/environments/${{ matrix.hdf5 }}
|
|
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}
|
|
|
|
- name: Check Cache
|
|
shell: bash -l {0}
|
|
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib
|
|
|
|
###
|
|
# Configure and build
|
|
###
|
|
|
|
- name: Perform out-of-directory build
|
|
shell: bash -l {0}
|
|
run: |
|
|
mkdir build
|
|
cd build
|
|
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DENABLE_HDF4=${ENABLE_HDF4} -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=${ENABLE_DAP} -DENABLE_HDF5=${ENABLE_HDF5} -DENABLE_NCZARR=${ENABLE_NCZARR}
|
|
|
|
- name: Print Summary
|
|
shell: bash -l {0}
|
|
run: |
|
|
cd build
|
|
cat libnetcdf.settings
|
|
|
|
- name: Build All
|
|
shell: bash -l {0}
|
|
run: |
|
|
cd build
|
|
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
|
|
if: ${{ success() }}
|
|
|
|
- name: Run Tests
|
|
shell: bash -l {0}
|
|
run: |
|
|
cd build
|
|
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --verbose -j 12 .
|
|
if: ${{ success() }}
|
|
|
|
- name: Verbose Output if CTest Failure
|
|
shell: bash -l {0}
|
|
run: |
|
|
cd build
|
|
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV
|
|
if: ${{ failure() }}
|
|
|