mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-12-21 08:39:46 +08:00
231ae96c4b
* re: https://github.com/Unidata/netcdf-c/pull/2278 * re: https://github.com/Unidata/netcdf-c/issues/2485 * re: https://github.com/Unidata/netcdf-c/issues/2474 This PR subsumes PR https://github.com/Unidata/netcdf-c/pull/2278. Actually is a bit an omnibus covering several issues. ## PR https://github.com/Unidata/netcdf-c/pull/2278 Add support for the Zarr string type. Zarr strings are restricted currently to be of fixed size. The primary issue to be addressed is to provide a way for user to specify the size of the fixed length strings. This is handled by providing the following new attributes special: 1. **_nczarr_default_maxstrlen** — This is an attribute of the root group. It specifies the default maximum string length for string types. If not specified, then it has the value of 64 characters. 2. **_nczarr_maxstrlen** — This is a per-variable attribute. It specifies the maximum string length for the string type associated with the variable. If not specified, then it is assigned the value of **_nczarr_default_maxstrlen**. This PR also requires some hacking to handle the existing netcdf-c NC_CHAR type, which does not exist in zarr. The goal was to choose numpy types for both the netcdf-c NC_STRING type and the netcdf-c NC_CHAR type such that if a pure zarr implementation read them, it would still work and an NC_CHAR type would be handled by zarr as a string of length 1. For writing variables and NCZarr attributes, the type mapping is as follows: * "|S1" for NC_CHAR. * ">S1" for NC_STRING && MAXSTRLEN==1 * ">Sn" for NC_STRING && MAXSTRLEN==n Note that it is a bit of a hack to use endianness, but it should be ok since for string/char, the endianness has no meaning. For reading attributes with pure zarr (i.e. with no nczarr atribute types defined), they will always be interpreted as of type NC_CHAR. ## Issue: https://github.com/Unidata/netcdf-c/issues/2474 This PR partly fixes this issue because it provided more comprehensive support for Zarr attributes that are JSON valued expressions. This PR still does not address the problem in that issue where the _ARRAY_DIMENSION attribute is incorrectly set. Than can only be fixed by the creator of the datasets. ## Issue: https://github.com/Unidata/netcdf-c/issues/2485 This PR also fixes the scalar failure shown in this issue. It generally cleans up scalar handling. It also adds a note to the documentation describing that NCZarr supports scalars while Zarr does not and also how scalar interoperability is achieved. ## Misc. Other Changes 1. Convert the nczarr special attributes and keys to be all lower case. So "_NCZARR_ATTR" now used "_nczarr_attr. Support back compatibility for the upper case names. 2. Cleanup my too-clever-by-half handling of scalars in libnczarr.
1029 lines
24 KiB
C
1029 lines
24 KiB
C
/*********************************************************************
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* Copyright 2018, UCAR/Unidata
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* See netcdf/COPYRIGHT file for copying and redistribution conditions.
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*********************************************************************/
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#ifdef HAVE_CONFIG_H
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#include "config.h"
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#endif
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#if defined(_WIN32) || defined(_WIN64)
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#include <crtdbg.h>
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#include <direct.h>
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#endif
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#include "ncd4dispatch.h"
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#include "nc4internal.h"
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#include "d4includes.h"
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#include "d4curlfunctions.h"
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#ifdef HAVE_GETRLIMIT
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# ifdef HAVE_SYS_RESOURCE_H
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# include <sys/time.h>
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# endif
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# ifdef HAVE_SYS_RESOURCE_H
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# include <sys/resource.h>
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# endif
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#endif
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#if 0
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/* Define the set of protocols known to be constrainable */
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static char* constrainableprotocols[] = {"http", "https",NULL};
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#endif
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static int ncd4initialized = 0;
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static const NC_Dispatch NCD4_dispatch_base;
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const NC_Dispatch* NCD4_dispatch_table = NULL; /* moved here from ddispatch.c */
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/**************************************************/
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/* Define a structure defining reserved attributes */
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/** @internal List of reserved attributes. */
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static const NC_reservedatt NCD4_reserved[] = {
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{D4CHECKSUMATTR, READONLYFLAG|NAMEONLYFLAG}, /*_DAP4_Checksum_CRC32*/
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{D4LEATTR, READONLYFLAG|NAMEONLYFLAG}, /*_DAP4_Little_Endian*/
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/* Also need to include the provenance attributes */
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{NCPROPS, READONLYFLAG|NAMEONLYFLAG}, /*_NCProperties*/
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{NULL, 0}
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};
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/* Forward */
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static int globalinit(void);
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static int ncd4_get_att_reserved(NC* ncp, int ncid, int varid, const char* name, void* value, nc_type t, const NC_reservedatt* rsvp);
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static int ncd4_inq_att_reserved(NC* ncp, int ncid, int varid, const char* name, nc_type* xtypep, size_t* lenp, const NC_reservedatt* rsvp);
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/**************************************************/
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int
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NCD4_initialize(void)
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{
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NCD4_dispatch_table = &NCD4_dispatch_base;
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ncd4initialized = 1;
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ncloginit();
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#ifdef D4DEBUG
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/* force logging to go to stderr */
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nclogclose();
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if(nclogopen(NULL))
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ncsetlogging(1); /* turn it on */
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#endif
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/* Init global state */
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globalinit();
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return THROW(NC_NOERR);
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}
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int
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NCD4_finalize(void)
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{
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return THROW(NC_NOERR);
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}
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static int
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NCD4_redef(int ncid)
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{
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return (NC_EPERM);
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}
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static int
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NCD4__enddef(int ncid, size_t h_minfree, size_t v_align, size_t v_minfree, size_t r_align)
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{
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return (NC_NOERR); /* let it go */
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}
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static int
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NCD4_sync(int ncid)
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{
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return (NC_NOERR); /* let it go */
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}
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static int
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NCD4_create(const char *path, int cmode,
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size_t initialsz, int basepe, size_t *chunksizehintp,
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void* mpidata, const NC_Dispatch *dispatch, int ncid)
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{
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return THROW(NC_EPERM);
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}
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static int
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NCD4_put_vara(int ncid, int varid,
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const size_t *start, const size_t *edges,
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const void *value,
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nc_type memtype)
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{
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return THROW(NC_EPERM);
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}
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static int
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NCD4_put_vars(int ncid, int varid,
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const size_t *start, const size_t *edges, const ptrdiff_t* stride,
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const void *value0, nc_type memtype)
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{
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return THROW(NC_EPERM);
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}
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/*
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Force dap4 access to be read-only
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*/
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static int
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NCD4_set_fill(int ncid, int fillmode, int* old_modep)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_dim(int ncid, const char* name, size_t len, int* idp)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_put_att(int ncid, int varid, const char* name, nc_type datatype,
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size_t len, const void* value, nc_type t)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_var(int ncid, const char *name,
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nc_type xtype, int ndims, const int *dimidsp, int *varidp)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_grp(int ncid, const char* p2, int* p3)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_rename_grp(int ncid, const char* p)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_compound(int ncid, size_t p2, const char* p3, nc_type* t)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_insert_compound(int ncid, nc_type t1, const char* p3, size_t p4, nc_type t2)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_insert_array_compound(int ncid, nc_type t1, const char* p3, size_t p4,
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nc_type t2, int p6, const int* p7)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_vlen(int ncid, const char* p2, nc_type base_typeid, nc_type* t)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_put_vlen_element(int ncid, int p2, void* p3, size_t p4, const void* p5)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_enum(int ncid, nc_type t1, const char* p3, nc_type* t)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_insert_enum(int ncid, nc_type t1, const char* p3, const void* p4)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_opaque(int ncid, size_t p2, const char* p3, nc_type* t)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_var_deflate(int ncid, int p2, int p3, int p4, int p5)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_var_fletcher32(int ncid, int p2, int p3)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_var_chunking(int ncid, int p2, int p3, const size_t* p4)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_var_fill(int ncid, int p2, int p3, const void* p4)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_var_endian(int ncid, int p2, int p3)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_def_var_filter(int ncid, int varid, unsigned int id, size_t n, const unsigned int* parms)
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{
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return (NC_EPERM);
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}
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static int
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NCD4_set_var_chunk_cache(int ncid, int p2, size_t p3, size_t p4, float p5)
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{
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return (NC_EPERM);
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}
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/**************************************************/
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/*
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Following functions basically return the netcdf-4 value WRT to the nc4id.
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However, it is necessary to modify the grpid(ncid) to point to the substrate.
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*/
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static int
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NCD4_inq_format(int ncid, int* formatp)
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{
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NC* ncp;
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int ret = NC_NOERR;
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int substrateid;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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substrateid = makenc4id(ncp,ncid);
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ret = nc_inq_format(substrateid, formatp);
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return (ret);
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}
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static int
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NCD4_inq(int ncid, int* ndimsp, int* nvarsp, int* nattsp, int* unlimdimidp)
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{
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NC* ncp;
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int ret;
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int substrateid;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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substrateid = makenc4id(ncp,ncid);
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ret = nc_inq(substrateid, ndimsp, nvarsp, nattsp, unlimdimidp);
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return (ret);
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}
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static int
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NCD4_inq_type(int ncid, nc_type p2, char* p3, size_t* p4)
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{
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NC* ncp;
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int ret;
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int substrateid;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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substrateid = makenc4id(ncp,ncid);
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ret = nc_inq_type(substrateid, p2, p3, p4);
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return (ret);
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}
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static int
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NCD4_inq_dimid(int ncid, const char* name, int* idp)
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{
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NC* ncp;
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int ret;
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int substrateid;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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substrateid = makenc4id(ncp,ncid);
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ret = nc_inq_dimid(substrateid, name, idp);
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return (ret);
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}
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static int
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NCD4_inq_unlimdim(int ncid, int* unlimdimidp)
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{
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NC* ncp;
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int ret;
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int substrateid;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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substrateid = makenc4id(ncp,ncid);
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ret = nc_inq_unlimdim(substrateid, unlimdimidp);
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return (ret);
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}
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static int
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NCD4_rename_dim(int ncid, int dimid, const char* name)
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{
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NC* ncp;
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int ret;
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int substrateid;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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substrateid = makenc4id(ncp,ncid);
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ret = nc_rename_dim(substrateid, dimid, name);
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return (ret);
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}
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static int
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NCD4_inq_att(int ncid, int varid, const char* name,
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nc_type* xtypep, size_t* lenp)
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{
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NC* ncp;
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int ret;
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int substrateid;
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const NC_reservedatt* rsvp = NULL;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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substrateid = makenc4id(ncp,ncid);
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/* Is this a reserved attribute name? */
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if(name && (rsvp = NCD4_lookupreserved(name)))
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return ncd4_inq_att_reserved(ncp,ncid,varid,name,xtypep,lenp, rsvp);
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ret = nc_inq_att(substrateid, varid, name, xtypep, lenp);
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return (ret);
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}
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const struct NC_reservedatt*
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NCD4_lookupreserved(const char* name)
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{
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const NC_reservedatt* p = NCD4_reserved;
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for(;p->name;p++) {
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if(strcmp(name,p->name)==0)
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return p;
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}
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return NULL;
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}
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static int
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NCD4_inq_attid(int ncid, int varid, const char *name, int *idp)
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{
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NC* ncp;
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int ret;
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int substrateid;
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const NC_reservedatt* rsvp = NULL;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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/* Is this a reserved attribute name? */
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if(name && (rsvp = NCD4_lookupreserved(name)))
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return NC_EATTMETA;
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substrateid = makenc4id(ncp,ncid);
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ret = nc_inq_attid(substrateid, varid, name, idp);
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return (ret);
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}
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static int
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NCD4_inq_attname(int ncid, int varid, int attnum, char* name)
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{
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NC* ncp;
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int ret;
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int substrateid;
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const NC_reservedatt* rsvp = NULL;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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/* Is this a reserved attribute name? */
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if(name && (rsvp = NCD4_lookupreserved(name)))
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return NC_EATTMETA;
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substrateid = makenc4id(ncp,ncid);
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ret = nc_inq_attname(substrateid, varid, attnum, name);
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return (ret);
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}
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static int
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NCD4_rename_att(int ncid, int varid, const char* name, const char* newname)
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{
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NC* ncp;
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int ret;
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int substrateid;
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const NC_reservedatt* rsvp = NULL;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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/* Is this a reserved attribute name? */
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if(name && (rsvp = NCD4_lookupreserved(name)))
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return NC_EATTMETA;
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substrateid = makenc4id(ncp,ncid);
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ret = nc_rename_att(substrateid, varid, name, newname);
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return (ret);
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}
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static int
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NCD4_del_att(int ncid, int varid, const char* name)
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{
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NC* ncp;
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int ret;
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int substrateid;
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const NC_reservedatt* rsvp = NULL;
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
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/* Is this a reserved attribute name? */
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if(name && (rsvp = NCD4_lookupreserved(name)))
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return NC_EATTMETA;
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substrateid = makenc4id(ncp,ncid);
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ret = nc_del_att(substrateid, varid, name);
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return (ret);
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}
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static int
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NCD4_get_att(int ncid, int varid, const char* name, void* value, nc_type t)
|
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{
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NC* ncp;
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int ret;
|
|
int substrateid;
|
|
const NC_reservedatt* rsvp = NULL;
|
|
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if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
/* Is this a reserved attribute name? */
|
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if(name && (rsvp = NCD4_lookupreserved(name)))
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return ncd4_get_att_reserved(ncp,ncid,varid,name,value,t,rsvp);
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substrateid = makenc4id(ncp,ncid);
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ret = NCDISPATCH_get_att(substrateid, varid, name, value, t);
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return (ret);
|
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}
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|
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static int
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NCD4_inq_var_all(int ncid, int varid, char *name, nc_type* xtypep,
|
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int* ndimsp, int* dimidsp, int* nattsp,
|
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int* shufflep, int* deflatep, int* deflate_levelp,
|
|
int* fletcher32p, int* contiguousp, size_t* chunksizesp,
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int* no_fill, void* fill_valuep, int* endiannessp,
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unsigned int* idp, size_t* nparamsp, unsigned int* params
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|
)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = NCDISPATCH_inq_var_all(substrateid, varid, name, xtypep,
|
|
ndimsp, dimidsp, nattsp,
|
|
shufflep, deflatep, deflate_levelp,
|
|
fletcher32p, contiguousp, chunksizesp,
|
|
no_fill, fill_valuep, endiannessp,
|
|
idp, nparamsp, params);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_varid(int ncid, const char *name, int *varidp)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_varid(substrateid,name,varidp);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_rename_var(int ncid, int varid, const char* name)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_rename_var(substrateid, varid, name);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_var_par_access(int ncid, int p2, int p3)
|
|
{
|
|
return (NC_ENOPAR);
|
|
}
|
|
|
|
|
|
static int
|
|
NCD4_inq_ncid(int ncid, const char* name, int* grp_ncid)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_ncid(substrateid, name, grp_ncid);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_show_metadata(int ncid)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_show_metadata(substrateid);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_grps(int ncid, int* ngrpsp, int* grpids)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
int ngrps;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
/* We always need to know |grpids| */
|
|
ret = nc_inq_grps(substrateid, &ngrps, grpids);
|
|
if(ret == NC_NOERR) {
|
|
if(ngrpsp != NULL)
|
|
*ngrpsp = ngrps; /* return if caller want it */
|
|
if(grpids != NULL) {
|
|
int i;
|
|
/* We need to convert the substrate group ids to dap4 group ids */
|
|
for(i=0;i<ngrps;i++)
|
|
grpids[i] = makedap4id(ncp,grpids[i]);
|
|
}
|
|
}
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_grpname(int ncid, char* p)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_grpname(substrateid, p);
|
|
return (ret);
|
|
}
|
|
|
|
|
|
static int
|
|
NCD4_inq_unlimdims(int ncid, int* p2, int* p3)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_unlimdims(substrateid, p2, p3);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_grpname_full(int ncid, size_t* p2, char* p3)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_grpname_full(substrateid, p2, p3);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_grp_parent(int ncid, int* p)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_grp_parent(substrateid, p);
|
|
if(p != NULL)
|
|
*p = makedap4id(ncp,*p);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_grp_full_ncid(int ncid, const char* fullname, int* grpidp)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_grp_full_ncid(substrateid, fullname, grpidp);
|
|
if(grpidp != NULL)
|
|
*grpidp = makedap4id(ncp,*grpidp);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_varids(int ncid, int* nvars, int* p)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_varids(substrateid, nvars, p);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_dimids(int ncid, int* ndims, int* p3, int p4)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_dimids(substrateid, ndims, p3, p4);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_typeids(int ncid, int* ntypes, int* p)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_typeids(substrateid, ntypes, p);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_type_equal(int ncid, nc_type t1, int p3, nc_type t2, int* p5)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_type_equal(substrateid, t1, p3, t2, p5);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_user_type(int ncid, nc_type t, char* p3, size_t* p4, nc_type* p5,
|
|
size_t* p6, int* p7)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_user_type(substrateid, t, p3, p4, p5, p6, p7);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_typeid(int ncid, const char* name, nc_type* t)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_typeid(substrateid, name, t);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_compound_field(int ncid, nc_type xtype, int fieldid, char *name,
|
|
size_t *offsetp, nc_type* field_typeidp, int *ndimsp,
|
|
int *dim_sizesp)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_compound_field(substrateid, xtype, fieldid, name, offsetp, field_typeidp, ndimsp, dim_sizesp);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_compound_fieldindex(int ncid, nc_type xtype, const char *name,
|
|
int *fieldidp)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_compound_fieldindex(substrateid, xtype, name, fieldidp);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_get_vlen_element(int ncid, int p2, const void* p3, size_t* p4, void* p5)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_get_vlen_element(substrateid, p2, p3, p4, p5);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_enum_member(int ncid, nc_type t1, int p3, char* p4, void* p5)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_enum_member(substrateid, t1, p3, p4, p5);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_enum_ident(int ncid, nc_type t1, long long p3, char* p4)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_enum_ident(substrateid, t1, p3, p4);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_get_var_chunk_cache(int ncid, int p2, size_t* p3, size_t* p4, float* p5)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_get_var_chunk_cache(substrateid, p2, p3, p4, p5);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_var_quantize(int ncid, int varid, int *quantize_modep, int *nsdp)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_var_quantize(substrateid, varid, quantize_modep, nsdp);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_var_filter_ids(int ncid, int varid, size_t* nfilters, unsigned int* filterids)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_var_filter_ids(substrateid, varid, nfilters, filterids);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_var_filter_info(int ncid, int varid, unsigned int id, size_t* nparams, unsigned int* params)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_var_filter_info(substrateid, varid, id, nparams, params);
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
NCD4_inq_filter_avail(int ncid, unsigned id)
|
|
{
|
|
NC* ncp;
|
|
int ret;
|
|
int substrateid;
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR) return (ret);
|
|
substrateid = makenc4id(ncp,ncid);
|
|
ret = nc_inq_filter_avail(substrateid, id);
|
|
return (ret);
|
|
}
|
|
|
|
/**************************************************/
|
|
/*
|
|
Following functions are overridden to handle
|
|
dap4 implementation specific issues.
|
|
*/
|
|
|
|
/* Force specific format */
|
|
static int
|
|
NCD4_inq_format_extended(int ncid, int* formatp, int* modep)
|
|
{
|
|
NC* nc;
|
|
int ncstatus = NC_check_id(ncid, (NC**)&nc);
|
|
if(ncstatus != NC_NOERR) return (ncstatus);
|
|
if(modep) *modep = nc->mode;
|
|
if(formatp) *formatp = NC_FORMATX_DAP4;
|
|
return THROW(NC_NOERR);
|
|
}
|
|
|
|
/*
|
|
Override nc_inq_dim to handle the fact
|
|
that unlimited dimensions will not have
|
|
a proper size because the substrate has
|
|
never (not yet) been written.
|
|
*/
|
|
int
|
|
NCD4_inq_dim(int ncid, int dimid, char* name, size_t* lenp)
|
|
{
|
|
int ret = NC_NOERR;
|
|
NC* ncp;
|
|
NCD4INFO* info;
|
|
NCD4meta* meta;
|
|
int i;
|
|
NCD4node* dim = NULL;
|
|
|
|
if((ret = NC_check_id(ncid, (NC**)&ncp)) != NC_NOERR)
|
|
goto done;
|
|
info = (NCD4INFO*)ncp->dispatchdata;
|
|
meta = info->substrate.metadata;
|
|
|
|
/* Locate the dimension specified by dimid */
|
|
for(i=0;i<nclistlength(meta->allnodes);i++) {
|
|
NCD4node* n = (NCD4node*)nclistget(meta->allnodes,i);
|
|
if(n->sort == NCD4_DIM && n->meta.id == dimid) {
|
|
dim = n;
|
|
break;
|
|
}
|
|
}
|
|
if(dim == NULL)
|
|
{ret = NC_EBADDIM; goto done;}
|
|
if(name)
|
|
strncpy(name,dim->name,NC_MAX_NAME);
|
|
if(lenp)
|
|
*lenp = (size_t)dim->dim.size;
|
|
done:
|
|
return (ret);
|
|
}
|
|
|
|
static int
|
|
ncd4_get_att_reserved(NC* ncp, int ncid, int varid, const char* name, void* value, nc_type t, const NC_reservedatt* rsvp)
|
|
{
|
|
int ret = NC_NOERR;
|
|
NCD4INFO* info = (NCD4INFO*)(ncp->dispatchdata);
|
|
NCD4meta* meta = info->substrate.metadata;
|
|
NCD4node* var = NULL;
|
|
|
|
if(strcmp(rsvp->name,D4CHECKSUMATTR)==0) {
|
|
unsigned int* ip = (unsigned int*)value;
|
|
if(varid == NC_GLOBAL)
|
|
{ret = NC_EBADID; goto done;}
|
|
if(t != NC_UINT) {ret = NC_EBADTYPE; goto done;}
|
|
if((ret=NCD4_findvar(ncp,ncid,varid,&var,NULL))) goto done;
|
|
if(var->data.remotechecksummed == 0)
|
|
{ret = NC_ENOTATT; goto done;}
|
|
*ip = (var->data.remotechecksum);
|
|
} else if(strcmp(rsvp->name,D4LEATTR)==0) {
|
|
int* ip = (int*)value;
|
|
if(varid != NC_GLOBAL)
|
|
{ret = NC_EBADID; goto done;}
|
|
if(t != NC_INT) {ret = NC_EBADTYPE; goto done;}
|
|
*ip = (meta->serial.remotelittleendian?1:0);
|
|
}
|
|
done:
|
|
return THROW(ret);
|
|
}
|
|
|
|
static int
|
|
ncd4_inq_att_reserved(NC* ncp, int ncid, int varid, const char* name, nc_type* xtypep, size_t* lenp, const NC_reservedatt* rsvp)
|
|
{
|
|
int ret = NC_NOERR;
|
|
NCD4node* var = NULL;
|
|
|
|
if(strcmp(rsvp->name,D4CHECKSUMATTR)==0) {
|
|
if(varid == NC_GLOBAL)
|
|
{ret = NC_EBADID; goto done;}
|
|
if((ret=NCD4_findvar(ncp,ncid,varid,&var,NULL))) goto done;
|
|
if(var->data.remotechecksummed == 0)
|
|
{ret = NC_ENOTATT; goto done;}
|
|
if(xtypep) *xtypep = NC_UINT;
|
|
if(lenp) *lenp = 1;
|
|
} else if(strcmp(rsvp->name,D4LEATTR)==0) {
|
|
if(varid != NC_GLOBAL)
|
|
{ret = NC_EBADID; goto done;}
|
|
if(xtypep) *xtypep = NC_INT;
|
|
if(lenp) *lenp = 1;
|
|
}
|
|
done:
|
|
return THROW(ret);
|
|
}
|
|
|
|
/**************************************************/
|
|
|
|
static int
|
|
globalinit(void)
|
|
{
|
|
int stat = NC_NOERR;
|
|
return stat;
|
|
}
|
|
|
|
/**************************************************/
|
|
|
|
static const NC_Dispatch NCD4_dispatch_base = {
|
|
|
|
NC_FORMATX_DAP4,
|
|
NC_DISPATCH_VERSION,
|
|
|
|
NCD4_create,
|
|
NCD4_open,
|
|
|
|
NCD4_redef,
|
|
NCD4__enddef,
|
|
NCD4_sync,
|
|
NCD4_abort,
|
|
NCD4_close,
|
|
NCD4_set_fill,
|
|
NCD4_inq_format,
|
|
NCD4_inq_format_extended, /*inq_format_extended*/
|
|
|
|
NCD4_inq,
|
|
NCD4_inq_type,
|
|
|
|
NCD4_def_dim,
|
|
NCD4_inq_dimid,
|
|
NCD4_inq_dim,
|
|
NCD4_inq_unlimdim,
|
|
NCD4_rename_dim,
|
|
|
|
NCD4_inq_att,
|
|
NCD4_inq_attid,
|
|
NCD4_inq_attname,
|
|
NCD4_rename_att,
|
|
NCD4_del_att,
|
|
NCD4_get_att,
|
|
NCD4_put_att,
|
|
|
|
NCD4_def_var,
|
|
NCD4_inq_varid,
|
|
NCD4_rename_var,
|
|
NCD4_get_vara,
|
|
NCD4_put_vara,
|
|
NCD4_get_vars,
|
|
NCD4_put_vars,
|
|
NCDEFAULT_get_varm,
|
|
NCDEFAULT_put_varm,
|
|
|
|
NCD4_inq_var_all,
|
|
|
|
NCD4_var_par_access,
|
|
NCD4_def_var_fill,
|
|
|
|
NCD4_show_metadata,
|
|
NCD4_inq_unlimdims,
|
|
NCD4_inq_ncid,
|
|
NCD4_inq_grps,
|
|
NCD4_inq_grpname,
|
|
NCD4_inq_grpname_full,
|
|
NCD4_inq_grp_parent,
|
|
NCD4_inq_grp_full_ncid,
|
|
NCD4_inq_varids,
|
|
NCD4_inq_dimids,
|
|
NCD4_inq_typeids,
|
|
NCD4_inq_type_equal,
|
|
NCD4_def_grp,
|
|
NCD4_rename_grp,
|
|
NCD4_inq_user_type,
|
|
NCD4_inq_typeid,
|
|
|
|
NCD4_def_compound,
|
|
NCD4_insert_compound,
|
|
NCD4_insert_array_compound,
|
|
NCD4_inq_compound_field,
|
|
NCD4_inq_compound_fieldindex,
|
|
NCD4_def_vlen,
|
|
NCD4_put_vlen_element,
|
|
NCD4_get_vlen_element,
|
|
NCD4_def_enum,
|
|
NCD4_insert_enum,
|
|
NCD4_inq_enum_member,
|
|
NCD4_inq_enum_ident,
|
|
NCD4_def_opaque,
|
|
NCD4_def_var_deflate,
|
|
NCD4_def_var_fletcher32,
|
|
NCD4_def_var_chunking,
|
|
NCD4_def_var_endian,
|
|
NCD4_def_var_filter,
|
|
NCD4_set_var_chunk_cache,
|
|
NCD4_get_var_chunk_cache,
|
|
|
|
NCD4_inq_var_filter_ids,
|
|
NCD4_inq_var_filter_info,
|
|
|
|
NC_NOTNC4_def_var_quantize,
|
|
NCD4_inq_var_quantize,
|
|
|
|
NCD4_inq_filter_avail,
|
|
};
|