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https://github.com/Unidata/netcdf-c.git
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e7d5f24078
The primary change is to support the use of a zip file as a storage format. Simultaneously the .nz4 support is made obsolete Use of zip requires the libzip support library, so a number of changes to the build files (Makefile.am, CMakeLists.txt) are necessary to locate and incorporate libzip. The nczarr_tests tests are also changed to add zip testing. Other changes: * Make sure distcheck leaves no files around. * Add some functions to netcdf_aux to export some functions of libnetcdf. * Add a new error NC_EFOUND as the complement of NC_EEMPTY. * Add tracing support to nclog and use it in libnczarr. * Modify the zmap interface to support the writeonce semantics of zip. * Create a new s3util.c to support a variety of S3 auxilliary functions. * EXTERNL'ize a number of functions so they can be used in s3util. * Add support for the S3 ListObjects CommonPrefixes mechanism to improve search. * Add experimental support for running nczarr X s3 tests against the actual Amazon S3 cloud.
1074 lines
30 KiB
C
1074 lines
30 KiB
C
/*
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Copyright (c) 1998-2018 University Corporation for Atmospheric Research/Unidata
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See COPYRIGHT for license information.
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*/
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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#include "config.h"
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#include <stdlib.h>
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#include <string.h>
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#include <assert.h>
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#include "config.h"
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#include "netcdf.h"
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#include "netcdf_aux.h"
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#include "ncoffsets.h"
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#include "nclog.h"
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#include "ncrc.h"
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#include "netcdf_filter.h"
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struct NCAUX_FIELD {
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char* name;
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nc_type fieldtype;
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size_t ndims;
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int dimsizes[NC_MAX_VAR_DIMS];
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size_t size;
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size_t offset;
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size_t alignment;
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};
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struct NCAUX_CMPD {
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int ncid;
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int mode;
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char* name;
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size_t nfields;
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struct NCAUX_FIELD* fields;
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size_t size;
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size_t offset; /* cumulative as fields are added */
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size_t alignment;
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};
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/* It is helpful to have a structure that contains memory and an offset */
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typedef struct Position{char* memory; ptrdiff_t offset;} Position;
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/* Forward */
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static int reclaim_datar(int ncid, int xtype, size_t typesize, Position*);
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static int ncaux_initialized = 0;
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#ifdef USE_NETCDF4
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static int reclaim_usertype(int ncid, int xtype, Position* offset);
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static int reclaim_compound(int ncid, int xtype, size_t size, size_t nfields, Position* offset);
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static int reclaim_vlen(int ncid, int xtype, int basetype, Position* offset);
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static int reclaim_enum(int ncid, int xtype, int basetype, size_t, Position* offset);
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static int reclaim_opaque(int ncid, int xtype, size_t size, Position* offset);
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static int computefieldinfo(struct NCAUX_CMPD* cmpd);
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#endif /* USE_NETCDF4 */
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static int filterspec_cvt(const char* txt, size_t* nparamsp, unsigned int* params);
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/**************************************************/
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/**
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Reclaim the output tree of data from a call
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to e.g. nc_get_vara or the input to e.g. nc_put_vara.
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This recursively walks the top-level instances to
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reclaim any nested data such as vlen or strings or such.
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Assumes it is passed a pointer to count instances of xtype.
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Reclaims any nested data.
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WARNING: does not reclaim the top-level memory because
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we do not know how it was allocated.
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Should work for any netcdf format.
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@param ncid file ncid
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@param xtype type id
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@param memory to reclaim
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@param count number of instances of the type in memory
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@return error code
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*/
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EXTERNL int
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ncaux_reclaim_data(int ncid, int xtype, void* memory, size_t count)
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{
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int stat = NC_NOERR;
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size_t typesize = 0;
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size_t i;
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Position offset;
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if(ncid < 0 || xtype < 0
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|| (memory == NULL && count > 0)
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|| xtype == NC_NAT)
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{stat = NC_EINVAL; goto done;}
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if(memory == NULL || count == 0)
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goto done; /* ok, do nothing */
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if((stat=nc_inq_type(ncid,xtype,NULL,&typesize))) goto done;
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offset.memory = (char*)memory; /* use char* so we can do pointer arithmetic */
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offset.offset = 0;
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for(i=0;i<count;i++) {
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if((stat=reclaim_datar(ncid,xtype,typesize,&offset))) /* reclaim one instance */
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break;
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}
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done:
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return stat;
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}
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/* Recursive type walker: reclaim a single instance */
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static int
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reclaim_datar(int ncid, int xtype, size_t typesize, Position* offset)
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{
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int stat = NC_NOERR;
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switch (xtype) {
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case NC_CHAR: case NC_BYTE: case NC_UBYTE:
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case NC_SHORT: case NC_USHORT:
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case NC_INT: case NC_UINT: case NC_FLOAT:
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case NC_INT64: case NC_UINT64: case NC_DOUBLE:
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offset->offset += typesize;
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break;
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#ifdef USE_NETCDF4
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case NC_STRING: {
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char** sp = (char**)(offset->memory + offset->offset);
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/* Need to reclaim string */
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if(*sp != NULL) free(*sp);
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offset->offset += typesize;
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} break;
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default:
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/* reclaim a user type */
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stat = reclaim_usertype(ncid,xtype,offset);
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#else
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default:
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stat = NC_ENOTNC4;
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#endif
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break;
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}
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return stat;
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}
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#ifdef USE_NETCDF4
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static ptrdiff_t
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read_align(ptrdiff_t offset, size_t alignment)
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{
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size_t loc_align = (alignment == 0 ? 1 : alignment);
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size_t delta = (offset % loc_align);
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if(delta == 0) return offset;
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return offset + (alignment - delta);
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}
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static int
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reclaim_usertype(int ncid, int xtype, Position* offset)
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{
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int stat = NC_NOERR;
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size_t size;
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nc_type basetype;
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size_t nfields;
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int klass;
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/* Get info about the xtype */
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stat = nc_inq_user_type(ncid, xtype, NULL, &size, &basetype, &nfields, &klass);
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switch (klass) {
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case NC_OPAQUE: stat = reclaim_opaque(ncid,xtype,size,offset); break;
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case NC_ENUM: stat = reclaim_enum(ncid,xtype,basetype,size,offset); break;
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case NC_COMPOUND: stat = reclaim_compound(ncid,xtype,size,nfields,offset); break;
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case NC_VLEN: stat = reclaim_vlen(ncid,xtype,basetype,offset); break;
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default:
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stat = NC_EINVAL;
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break;
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}
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return stat;
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}
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static int
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reclaim_vlen(int ncid, int xtype, int basetype, Position* offset)
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{
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int stat = NC_NOERR;
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size_t i, basesize;
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nc_vlen_t* vl = (nc_vlen_t*)(offset->memory+offset->offset);
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/* Get size of the basetype */
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if((stat=nc_inq_type(ncid,basetype,NULL,&basesize))) goto done;
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/* Free up each entry in the vlen list */
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if(vl->p != NULL) {
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Position voffset;
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unsigned int alignment = ncaux_type_alignment(basetype,ncid);
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voffset.memory = vl->p;
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voffset.offset = 0;
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for(i=0;i<vl->len;i++) {
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voffset.offset = read_align(voffset.offset,alignment);
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if((stat = reclaim_datar(ncid,basetype,basesize,&voffset))) goto done;
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}
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offset->offset += sizeof(nc_vlen_t);
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free(vl->p);
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}
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done:
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return stat;
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}
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static int
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reclaim_enum(int ncid, int xtype, int basetype, size_t basesize, Position* offset)
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{
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/* basically same as an instance of the enum's integer basetype */
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return reclaim_datar(ncid,basetype,basesize,offset);
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}
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static int
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reclaim_opaque(int ncid, int xtype, size_t opsize, Position* offset)
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{
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/* basically a fixed size sequence of bytes */
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offset->offset += opsize;
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return NC_NOERR;
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}
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static int
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reclaim_compound(int ncid, int xtype, size_t cmpdsize, size_t nfields, Position* offset)
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{
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int stat = NC_NOERR;
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size_t fid, fieldoffset, i, fieldsize, arraycount;
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int dimsizes[NC_MAX_VAR_DIMS];
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int ndims;
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nc_type fieldtype;
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ptrdiff_t saveoffset;
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saveoffset = offset->offset;
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/* Get info about each field in turn and reclaim it */
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for(fid=0;fid<nfields;fid++) {
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unsigned int fieldalignment;
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/* Get all relevant info about the field */
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if((stat = nc_inq_compound_field(ncid,xtype,fid,NULL,&fieldoffset, &fieldtype, &ndims, dimsizes))) goto done;
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fieldalignment = ncaux_type_alignment(fieldtype,ncid);
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if((stat = nc_inq_type(ncid,fieldtype,NULL,&fieldsize))) goto done;
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if(ndims == 0) {ndims=1; dimsizes[0]=1;} /* fake the scalar case */
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/* Align to this field */
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offset->offset = read_align(offset->offset,fieldalignment);
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/* compute the total number of elements in the field array */
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arraycount = 1;
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for(i=0;i<ndims;i++) arraycount *= dimsizes[i];
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for(i=0;i<arraycount;i++) {
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if((stat = reclaim_datar(ncid, fieldtype, fieldsize, offset))) goto done;
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}
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}
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/* Return to beginning of the compound and move |compound| */
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offset->offset = saveoffset;
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offset->offset += cmpdsize;
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done:
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return stat;
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}
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#endif /*USE_NETCDF4*/
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/**************************************************/
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/*
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This code is a variant of the H5detect.c code from HDF5.
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Author: D. Heimbigner 10/7/2008
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*/
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EXTERNL int
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ncaux_begin_compound(int ncid, const char *name, int alignmode, void** tagp)
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{
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#ifdef USE_NETCDF4
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int status = NC_NOERR;
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struct NCAUX_CMPD* cmpd = NULL;
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if(tagp) *tagp = NULL;
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cmpd = (struct NCAUX_CMPD*)calloc(1,sizeof(struct NCAUX_CMPD));
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if(cmpd == NULL) {status = NC_ENOMEM; goto fail;}
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cmpd->ncid = ncid;
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cmpd->mode = alignmode;
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cmpd->nfields = 0;
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cmpd->name = strdup(name);
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if(cmpd->name == NULL) {status = NC_ENOMEM; goto fail;}
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if(tagp) {
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*tagp = (void*)cmpd;
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} else { /* Error, free cmpd to avoid memory leak. */
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free(cmpd);
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}
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return status;
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fail:
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ncaux_abort_compound((void*)cmpd);
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return status;
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#else
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return NC_ENOTBUILT;
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#endif
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}
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EXTERNL int
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ncaux_abort_compound(void* tag)
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{
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#ifdef USE_NETCDF4
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int i;
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struct NCAUX_CMPD* cmpd = (struct NCAUX_CMPD*)tag;
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if(cmpd == NULL) goto done;
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if(cmpd->name) free(cmpd->name);
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for(i=0;i<cmpd->nfields;i++) {
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struct NCAUX_FIELD* field = &cmpd->fields[i];
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if(field->name) free(field->name);
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}
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if(cmpd->fields) free(cmpd->fields);
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free(cmpd);
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done:
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return NC_NOERR;
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#else
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return NC_ENOTBUILT;
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#endif
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}
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EXTERNL int
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ncaux_add_field(void* tag, const char *name, nc_type field_type,
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int ndims, const int* dimsizes)
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{
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#ifdef USE_NETCDF4
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int i;
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int status = NC_NOERR;
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struct NCAUX_CMPD* cmpd = (struct NCAUX_CMPD*)tag;
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struct NCAUX_FIELD* newfields = NULL;
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struct NCAUX_FIELD* field = NULL;
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if(cmpd == NULL) goto done;
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if(ndims < 0) {status = NC_EINVAL; goto done;}
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for(i=0;i<ndims;i++) {
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if(dimsizes[i] <= 0) {status = NC_EINVAL; goto done;}
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}
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if(cmpd->fields == NULL) {
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newfields = (struct NCAUX_FIELD*)calloc(1,sizeof(struct NCAUX_FIELD));
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} else {
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newfields = (struct NCAUX_FIELD*)realloc(cmpd->fields,cmpd->nfields+1*sizeof(struct NCAUX_FIELD));
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}
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if(cmpd->fields == NULL) {status = NC_ENOMEM; goto done;}
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cmpd->fields = newfields;
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field = &cmpd->fields[cmpd->nfields+1];
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field->name = strdup(name);
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field->fieldtype = field_type;
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if(field->name == NULL) {status = NC_ENOMEM; goto done;}
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field->ndims = (size_t)ndims;
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memcpy(field->dimsizes,dimsizes,sizeof(int)*field->ndims);
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cmpd->nfields++;
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done:
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if(newfields)
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free(newfields);
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return status;
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#else
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return NC_ENOTBUILT;
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#endif
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}
|
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|
|
EXTERNL int
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ncaux_end_compound(void* tag, nc_type* idp)
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{
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#ifdef USE_NETCDF4
|
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int i;
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int status = NC_NOERR;
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struct NCAUX_CMPD* cmpd = (struct NCAUX_CMPD*)tag;
|
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|
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if(cmpd == NULL) {status = NC_EINVAL; goto done;}
|
|
|
|
/* Compute field and compound info */
|
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status = computefieldinfo(cmpd);
|
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if(status != NC_NOERR) goto done;
|
|
|
|
status = nc_def_compound(cmpd->ncid, cmpd->size, cmpd->name, idp);
|
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if(status != NC_NOERR) goto done;
|
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|
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for(i=0;i<cmpd->nfields;i++) {
|
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struct NCAUX_FIELD* field = &cmpd->fields[i];
|
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if(field->ndims > 0) {
|
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status = nc_insert_compound(cmpd->ncid, *idp, field->name,
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field->offset, field->fieldtype);
|
|
} else {
|
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status = nc_insert_array_compound(cmpd->ncid, *idp, field->name,
|
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field->offset, field->fieldtype,
|
|
(int)field->ndims,field->dimsizes);
|
|
}
|
|
if(status != NC_NOERR) goto done;
|
|
}
|
|
|
|
done:
|
|
return status;
|
|
#else
|
|
return NC_ENOTBUILT;
|
|
#endif
|
|
}
|
|
|
|
/**************************************************/
|
|
|
|
/**
|
|
@param ncclass - type class for which alignment is requested; excludes ENUM|COMPOUND
|
|
*/
|
|
size_t
|
|
ncaux_class_alignment(int ncclass)
|
|
{
|
|
if(ncclass <= NC_MAX_ATOMIC_TYPE || ncclass == NC_VLEN || ncclass == NC_OPAQUE)
|
|
return NC_class_alignment(ncclass);
|
|
nclog(NCLOGERR,"ncaux_class_alignment: class %d; alignment cannot be determermined",ncclass);
|
|
return 0;
|
|
}
|
|
|
|
/**
|
|
@param ncid - only needed for a compound type
|
|
@param xtype - type for which alignment is requested
|
|
*/
|
|
size_t
|
|
ncaux_type_alignment(int xtype, int ncid)
|
|
{
|
|
if(!ncaux_initialized) {
|
|
NC_compute_alignments();
|
|
ncaux_initialized = 1;
|
|
}
|
|
if(xtype <= NC_MAX_ATOMIC_TYPE)
|
|
return NC_class_alignment(xtype); /* type == class */
|
|
#ifdef USE_NETCDF4
|
|
else {/* Presumably a user type */
|
|
int klass = NC_NAT;
|
|
int stat = nc_inq_user_type(ncid,xtype,NULL,NULL,NULL,NULL,&klass);
|
|
if(stat) goto done;
|
|
switch(klass) {
|
|
case NC_VLEN: return NC_class_alignment(klass);
|
|
case NC_OPAQUE: return NC_class_alignment(klass);
|
|
case NC_COMPOUND: {/* get alignment of the first field of the compound */
|
|
int fieldtype = NC_NAT;
|
|
if((stat=nc_inq_compound_fieldtype(ncid,xtype,0,&fieldtype))) goto done;
|
|
return ncaux_type_alignment(fieldtype,ncid); /* may recurse repeatedly */
|
|
} break;
|
|
default: break;
|
|
}
|
|
}
|
|
|
|
done:
|
|
#endif /*USE_NETCDF4 */
|
|
return 0; /* fail */
|
|
}
|
|
|
|
#ifdef USE_NETCDF4
|
|
/* Find first primitive field of a possibly nested sequence of compounds */
|
|
static nc_type
|
|
findfirstfield(int ncid, nc_type xtype)
|
|
{
|
|
int status = NC_NOERR;
|
|
nc_type fieldtype = xtype;
|
|
if(xtype <= NC_MAX_ATOMIC_TYPE) goto done;
|
|
|
|
status = nc_inq_compound_fieldtype(ncid, xtype, 0, &fieldtype);
|
|
if(status != NC_NOERR) goto done;
|
|
fieldtype = findfirstfield(ncid,fieldtype);
|
|
|
|
done:
|
|
return (status == NC_NOERR?fieldtype:NC_NAT);
|
|
}
|
|
|
|
static size_t
|
|
getpadding(size_t offset, size_t alignment)
|
|
{
|
|
size_t rem = (alignment==0?0:(offset % alignment));
|
|
size_t pad = (rem==0?0:(alignment - rem));
|
|
return pad;
|
|
}
|
|
|
|
static size_t
|
|
dimproduct(size_t ndims, int* dimsizes)
|
|
{
|
|
int i;
|
|
size_t product = 1;
|
|
for(i=0;i<ndims;i++) product *= (size_t)dimsizes[i];
|
|
return product;
|
|
}
|
|
|
|
static int
|
|
computefieldinfo(struct NCAUX_CMPD* cmpd)
|
|
{
|
|
int i;
|
|
int status = NC_NOERR;
|
|
size_t offset = 0;
|
|
size_t totaldimsize;
|
|
|
|
/* Assign the sizes for the fields */
|
|
for(i=0;i<cmpd->nfields;i++) {
|
|
struct NCAUX_FIELD* field = &cmpd->fields[i];
|
|
status = nc_inq_type(cmpd->ncid,field->fieldtype,NULL,&field->size);
|
|
if(status != NC_NOERR) goto done;
|
|
totaldimsize = dimproduct(field->ndims,field->dimsizes);
|
|
field->size *= totaldimsize;
|
|
}
|
|
|
|
for(offset=0,i=0;i<cmpd->nfields;i++) {
|
|
struct NCAUX_FIELD* field = &cmpd->fields[i];
|
|
int alignment = 0;
|
|
nc_type firsttype = findfirstfield(cmpd->ncid,field->fieldtype);
|
|
|
|
/* only support 'c' alignment for now*/
|
|
switch (field->fieldtype) {
|
|
case NC_OPAQUE:
|
|
field->alignment = 1;
|
|
break;
|
|
case NC_ENUM:
|
|
field->alignment = ncaux_type_alignment(firsttype,cmpd->ncid);
|
|
break;
|
|
case NC_VLEN: /*fall thru*/
|
|
case NC_COMPOUND:
|
|
field->alignment = ncaux_type_alignment(firsttype,cmpd->ncid);
|
|
break;
|
|
default:
|
|
field->alignment = ncaux_type_alignment(field->fieldtype,cmpd->ncid);
|
|
break;
|
|
|
|
}
|
|
offset += getpadding(offset,alignment);
|
|
field->offset = offset;
|
|
offset += field->size;
|
|
}
|
|
cmpd->size = offset;
|
|
cmpd->alignment = cmpd->fields[0].alignment;
|
|
|
|
done:
|
|
return status;
|
|
}
|
|
|
|
#endif /*USE_NETCDF4*/
|
|
|
|
|
|
/**************************************************/
|
|
/* Forward */
|
|
|
|
#define NUMCHAR "0123456789"
|
|
#define LPAREN '('
|
|
#define RPAREN ')'
|
|
#define LBRACK '['
|
|
#define RBRACK ']'
|
|
|
|
static int gettype(const int q0, const int q1, int* unsignedp);
|
|
|
|
/* Look at q0 and q1) to determine type */
|
|
static int
|
|
gettype(const int q0, const int q1, int* isunsignedp)
|
|
{
|
|
int type = 0;
|
|
int isunsigned = 0;
|
|
char typechar;
|
|
|
|
isunsigned = (q0 == 'u' || q0 == 'U');
|
|
if(q1 == '\0')
|
|
typechar = q0; /* we were given only a single char */
|
|
else if(isunsigned)
|
|
typechar = q1; /* we have something like Ux as the tag */
|
|
else
|
|
typechar = q1; /* look at last char for tag */
|
|
switch (typechar) {
|
|
case 'f': case 'F': case '.': type = 'f'; break; /* float */
|
|
case 'd': case 'D': type = 'd'; break; /* double */
|
|
case 'b': case 'B': type = 'b'; break; /* byte */
|
|
case 's': case 'S': type = 's'; break; /* short */
|
|
case 'l': case 'L': type = 'l'; break; /* long long */
|
|
case '0': case '1': case '2': case '3': case '4':
|
|
case '5': case '6': case '7': case '8': case '9': type = 'i'; break;
|
|
case 'u': case 'U': type = 'i'; isunsigned = 1; break; /* unsigned int */
|
|
case '\0': type = 'i'; break;
|
|
default: break;
|
|
}
|
|
if(isunsignedp) *isunsignedp = isunsigned;
|
|
return type;
|
|
}
|
|
|
|
#ifdef WORDS_BIGENDIAN
|
|
/* Byte swap an 8-byte integer in place */
|
|
static void
|
|
byteswap8(unsigned char* mem)
|
|
{
|
|
unsigned char c;
|
|
c = mem[0];
|
|
mem[0] = mem[7];
|
|
mem[7] = c;
|
|
c = mem[1];
|
|
mem[1] = mem[6];
|
|
mem[6] = c;
|
|
c = mem[2];
|
|
mem[2] = mem[5];
|
|
mem[5] = c;
|
|
c = mem[3];
|
|
mem[3] = mem[4];
|
|
mem[4] = c;
|
|
}
|
|
|
|
/* Byte swap an 8-byte integer in place */
|
|
static void
|
|
byteswap4(unsigned char* mem)
|
|
{
|
|
unsigned char c;
|
|
c = mem[0];
|
|
mem[0] = mem[3];
|
|
mem[3] = c;
|
|
c = mem[1];
|
|
mem[1] = mem[2];
|
|
mem[2] = c;
|
|
}
|
|
#endif
|
|
|
|
/**************************************************/
|
|
/* Moved here from netcdf_filter.h */
|
|
|
|
/*
|
|
This function implements the 8-byte conversion algorithms for HDF5
|
|
Before calling *nc_def_var_filter* (unless *NC_parsefilterspec* was used),
|
|
the client must call this function with the decode argument set to 0.
|
|
Inside the filter code, this function should be called with the decode
|
|
argument set to 1.
|
|
|
|
* @params mem8 is a pointer to the 8-byte value either to fix.
|
|
* @params decode is 1 if the function should apply the 8-byte decoding algorithm
|
|
else apply the encoding algorithm.
|
|
*/
|
|
|
|
void
|
|
ncaux_h5filterspec_fix8(unsigned char* mem8, int decode)
|
|
{
|
|
#ifdef WORDS_BIGENDIAN
|
|
if(decode) { /* Apply inverse of the encode case */
|
|
byteswap4(mem8); /* step 1: byte-swap each piece */
|
|
byteswap4(mem8+4);
|
|
byteswap8(mem8); /* step 2: convert to little endian format */
|
|
} else { /* encode */
|
|
byteswap8(mem8); /* step 1: convert to little endian format */
|
|
byteswap4(mem8); /* step 2: byte-swap each piece */
|
|
byteswap4(mem8+4);
|
|
}
|
|
#else /* Little endian */
|
|
/* No action is necessary */
|
|
#endif
|
|
}
|
|
|
|
/*
|
|
Parse a filter spec string into a NC_FILTER_SPEC*
|
|
Note that this differs from the usual case in that the
|
|
function is called once to get both the number of parameters
|
|
and the parameters themselves (hence the unsigned int** paramsp).
|
|
|
|
@param txt - a string containing the spec as a sequence of
|
|
constants separated by commas, where first constant
|
|
is the filter id and the rest are parameters.
|
|
@param idp - store the parsed filter id here
|
|
@param nparamsp - store the number of parameters here
|
|
@param paramsp - store the vector of parameters here; caller frees.
|
|
@return NC_NOERR if parse succeeded
|
|
@return NC_EINVAL otherwise
|
|
*/
|
|
|
|
EXTERNL int
|
|
ncaux_h5filterspec_parse(const char* txt, unsigned int* idp, size_t* nparamsp, unsigned int** paramsp)
|
|
{
|
|
int i,stat = NC_NOERR;
|
|
char* p;
|
|
char* sdata0 = NULL; /* what to free */
|
|
char* sdata = NULL; /* sdata0 with leading prefix skipped */
|
|
size_t nparams; /* no. of comma delimited params */
|
|
size_t nactual; /* actual number of unsigned int's */
|
|
const char* sid = NULL;
|
|
unsigned int filterid = 0;
|
|
unsigned int* params = NULL;
|
|
size_t len;
|
|
|
|
if(txt == NULL)
|
|
{stat = NC_EINVAL; goto done;}
|
|
len = strlen(txt);
|
|
if(len == 0)
|
|
{stat = NC_EINVAL; goto done;}
|
|
|
|
if((sdata0 = (char*)calloc(1,len+1+1))==NULL)
|
|
{stat = NC_ENOMEM; goto done;}
|
|
memcpy(sdata0,txt,len);
|
|
sdata = sdata0;
|
|
|
|
/* Count number of parameters + id and delimit */
|
|
p=sdata;
|
|
for(nparams=0;;nparams++) {
|
|
char* q = strchr(p,',');
|
|
if(q == NULL) break;
|
|
*q++ = '\0';
|
|
p = q;
|
|
}
|
|
nparams++; /* for final piece */
|
|
|
|
if(nparams == 0)
|
|
{stat = NC_EINVAL; goto done;} /* no id and no parameters */
|
|
|
|
p = sdata;
|
|
|
|
/* Extract the filter id */
|
|
sid = p;
|
|
if((sscanf(sid,"%u",&filterid)) != 1) {stat = NC_EINVAL; goto done;}
|
|
nparams--;
|
|
|
|
/* skip past the filter id */
|
|
p = p + strlen(p) + 1;
|
|
|
|
/* Allocate the max needed space (assume all params are 64 bit) */
|
|
if((params = (unsigned int*)calloc(sizeof(unsigned int),(nparams)*2))==NULL)
|
|
{stat = NC_ENOMEM; goto done;}
|
|
|
|
/* walk and capture */
|
|
for(nactual=0,i=0;i<nparams;i++) { /* step thru param strings */
|
|
size_t count = 0;
|
|
len = strlen(p);
|
|
/* skip leading white space */
|
|
while(strchr(" ",*p) != NULL) {p++; len--;}
|
|
if((stat = filterspec_cvt(p,&count,params+nactual))) goto done;
|
|
nactual += count;
|
|
p = p + strlen(p) + 1; /* move to next param string */
|
|
}
|
|
/* Now return results */
|
|
if(idp) *idp = filterid;
|
|
if(nparamsp) *nparamsp = nactual;
|
|
if(paramsp) {*paramsp = params; params = NULL;}
|
|
done:
|
|
nullfree(params);
|
|
nullfree(sdata);
|
|
return stat;
|
|
}
|
|
|
|
/*
|
|
Parse a string containing multiple '|' separated filter specs.
|
|
Use a vector of NC_Filterspec structs to return results.
|
|
@param txt0 - a string containing the list of filter specs.
|
|
@param formatp - store any leading format integer here
|
|
@param nspecsp - # of parsed specs
|
|
@param specsp - pointer to hold vector of parsed specs. Caller frees
|
|
@return NC_NOERR if parse succeeded
|
|
@return NC_EINVAL if bad parameters or parse failed
|
|
*/
|
|
|
|
EXTERNL int
|
|
ncaux_h5filterspec_parselist(const char* txt0, int* formatp, size_t* nspecsp, NC_H5_Filterspec*** vectorp)
|
|
{
|
|
int stat = NC_NOERR;
|
|
int format = 0;
|
|
size_t len = 0;
|
|
size_t nspecs = 0;
|
|
NC_H5_Filterspec** vector = NULL;
|
|
char* spec = NULL; /* without prefix */
|
|
char* p = NULL;
|
|
char* q = NULL;
|
|
|
|
if(txt0 == NULL) return NC_EINVAL;
|
|
/* Duplicate txt0 so we can modify it */
|
|
len = strlen(txt0);
|
|
if((spec = calloc(1,len+1+1)) == NULL) {stat = NC_ENOMEM; goto done;}
|
|
memcpy(spec,txt0,len); /* Note double ending nul */
|
|
|
|
/* See if there is a prefix '[format]' tag */
|
|
if(spec[0] == LBRACK) {
|
|
p = spec + 1;
|
|
q = strchr(p,RBRACK);
|
|
if(q == NULL) {stat = NC_EINVAL; goto done;}
|
|
*q++ = '\0'; /* delimit tag */
|
|
if(sscanf(p,"%d",&format) != 1) {stat = NC_EINVAL; goto done;}
|
|
spec = q; /* skip tag wrt later processing */
|
|
}
|
|
|
|
/* pass 1: count number of specs */
|
|
p = spec;
|
|
nspecs = 0;
|
|
while(*p) {
|
|
q = strchr(p,'|');
|
|
if(q == NULL) q = p + strlen(p); /* fake it */
|
|
nspecs++;
|
|
p = q + 1;
|
|
}
|
|
if(nspecs > 0) {
|
|
int count = 0;
|
|
if((vector = (NC_H5_Filterspec**)calloc(sizeof(NC_H5_Filterspec*),nspecs)) == NULL)
|
|
{stat = NC_ENOMEM; goto done;}
|
|
/* pass 2: parse */
|
|
p = spec;
|
|
for(count=0;count<nspecs;count++) {
|
|
NC_H5_Filterspec* spec = (NC_H5_Filterspec*)calloc(1,sizeof(NC_H5_Filterspec));
|
|
if(spec == NULL) {stat = NC_ENOMEM; goto done;}
|
|
vector[count] = spec;
|
|
q = strchr(p,'|');
|
|
if(q == NULL) q = p + strlen(p); /* fake it */
|
|
*q = '\0';
|
|
if((stat=ncaux_h5filterspec_parse(p,&spec->filterid,&spec->nparams,&spec->params))) goto done;
|
|
p = q+1; /* ok because of double nul */
|
|
}
|
|
}
|
|
if(formatp) *formatp = format;
|
|
if(nspecsp) *nspecsp = nspecs;
|
|
if(vectorp) {*vectorp = vector; vector = NULL;}
|
|
done:
|
|
nullfree(spec);
|
|
if(vector) {
|
|
int i;
|
|
for(i=0;i<nspecs;i++)
|
|
ncaux_h5filterspec_free(vector[i]);
|
|
nullfree(vector);
|
|
}
|
|
return stat;
|
|
}
|
|
|
|
/*
|
|
Parse a string containing multiple '|' separated filter specs.
|
|
Use a vector of NC_Filterspec structs to return results.
|
|
@param txt0 - a string containing the list of filter specs.
|
|
@param formatp - store any leading format integer here
|
|
@param nspecsp - # of parsed specs
|
|
@param specsp - pointer to hold vector of parsed specs. Caller frees
|
|
@return NC_NOERR if parse succeeded
|
|
@return NC_EINVAL if bad parameters or parse failed
|
|
*/
|
|
|
|
EXTERNL void
|
|
ncaux_h5filterspec_free(NC_H5_Filterspec* f)
|
|
{
|
|
if(f) nullfree(f->params);
|
|
nullfree(f);
|
|
}
|
|
|
|
|
|
/*
|
|
Convert a parameter string to one or two unsigned ints/
|
|
@param txt - (in) string constant
|
|
@param nparamsp - (out) # of unsigned ints produced
|
|
@param params - (out) produced unsigned ints
|
|
@return NC_NOERR if parse succeeded
|
|
@return NC_EINVAL if bad parameters or parse failed
|
|
*/
|
|
|
|
static int
|
|
filterspec_cvt(const char* txt, size_t* nparamsp, unsigned int* params)
|
|
{
|
|
int stat = NC_NOERR;
|
|
size_t nparams = 0; /*actual count*/
|
|
unsigned long long val64u;
|
|
unsigned int val32u;
|
|
double vald;
|
|
float valf;
|
|
unsigned int *vector;
|
|
unsigned char mem[8];
|
|
int isunsigned = 0;
|
|
int isnegative = 0;
|
|
int type = 0;
|
|
const char* q;
|
|
const char* p = txt;
|
|
size_t len = strlen(p);
|
|
int sstat;
|
|
|
|
/* skip leading white space */
|
|
while(strchr(" ",*p) != NULL) {p++; len--;}
|
|
/* Get leading sign character, if any */
|
|
if(*p == '-') isnegative = 1;
|
|
/* Get trailing type tag characters */
|
|
switch (len) {
|
|
case 0: stat = NC_EINVAL; goto done; /* empty parameter */
|
|
case 1: case 2:
|
|
q = (p + len) - 1; /* point to last char */
|
|
type = gettype(*q,'\0',&isunsigned);
|
|
break;
|
|
default: /* > 2 => we might have a two letter tag */
|
|
q = (p + len) - 2;
|
|
type = gettype(*q,*(q+1),&isunsigned);
|
|
break;
|
|
}
|
|
/* Now parse */
|
|
switch (type) {
|
|
case 'b': case 's': case 'i':
|
|
/* special case for a positive integer;for back compatibility.*/
|
|
if(!isnegative)
|
|
sstat = sscanf(p,"%u",&val32u);
|
|
else
|
|
sstat = sscanf(p,"%d",(int*)&val32u);
|
|
if(sstat != 1) {stat = NC_EINVAL; goto done;}
|
|
switch(type) {
|
|
case 'b': val32u = (val32u & 0xFF); break;
|
|
case 's': val32u = (val32u & 0xFFFF); break;
|
|
}
|
|
params[nparams++] = val32u;
|
|
break;
|
|
case 'f':
|
|
sstat = sscanf(p,"%lf",&vald);
|
|
if(sstat != 1) {stat = NC_EINVAL; goto done;}
|
|
valf = (float)vald;
|
|
params[nparams++] = *(unsigned int*)&valf;
|
|
break;
|
|
/* The following are 8-byte values, so we must swap pieces if this
|
|
is a little endian machine */
|
|
case 'd':
|
|
sstat = sscanf(p,"%lf",&vald);
|
|
if(sstat != 1) {stat = NC_EINVAL; goto done;};
|
|
memcpy(mem,&vald,sizeof(mem));
|
|
ncaux_h5filterspec_fix8(mem,0);
|
|
vector = (unsigned int*)mem;
|
|
params[nparams++] = vector[0];
|
|
params[nparams++] = vector[1];
|
|
break;
|
|
case 'l': /* long long */
|
|
if(isunsigned)
|
|
sstat = sscanf(p,"%llu",&val64u);
|
|
else
|
|
sstat = sscanf(p,"%lld",(long long*)&val64u);
|
|
if(sstat != 1) {stat = NC_EINVAL; goto done;};
|
|
memcpy(mem,&val64u,sizeof(mem));
|
|
ncaux_h5filterspec_fix8(mem,0);
|
|
vector = (unsigned int*)&mem;
|
|
params[nparams++] = vector[0];
|
|
params[nparams++] = vector[1];
|
|
break;
|
|
default:
|
|
{stat = NC_EINVAL; goto done;};
|
|
}
|
|
*nparamsp = nparams;
|
|
|
|
done:
|
|
return stat;
|
|
}
|
|
|
|
|
|
|
|
|
|
#if 0
|
|
/*
|
|
Parse a filter spec string into a NC_H5_Filterspec*
|
|
@param txt - a string containing the spec as a sequence of
|
|
constants separated by commas.
|
|
@param specp - store the parsed filter here -- caller frees
|
|
@return NC_NOERR if parse succeeded
|
|
@return NC_EINVAL otherwise
|
|
*/
|
|
|
|
EXTERNL int
|
|
ncaux_filter_parsespec(const char* txt, NC_H5_Filterspec** h5specp)
|
|
{
|
|
int stat = NC_NOERR;
|
|
NC_Filterspec* spec = NULL;
|
|
NC_H5_Filterspec* h5spec = NULL;
|
|
size_t len;
|
|
|
|
if(txt == NULL)
|
|
{stat = NC_EINVAL; goto done;}
|
|
len = strlen(txt);
|
|
if(len == 0) {stat = NC_EINVAL; goto done;}
|
|
|
|
/* Parse as strings */
|
|
if((stat = ncaux_filterspec_parse(txt,&spec))) goto done;
|
|
/* walk and convert */
|
|
if((stat = ncaux_filterspec_cvt(spec,&h5spec))) goto done;
|
|
/* Now return results */
|
|
if(h5specp != NULL) {*h5specp = h5spec; h5spec = NULL;}
|
|
|
|
done:
|
|
ncaux_filterspec_free(spec);
|
|
if(h5spec) nullfree(h5spec->params);
|
|
nullfree(h5spec);
|
|
return stat;
|
|
}
|
|
|
|
/*
|
|
Parse a string containing multiple '|' separated filter specs.
|
|
|
|
@param spec0 - a string containing the list of filter specs.
|
|
@param nspecsp - # of parsed specs
|
|
@param specsp - pointer to hold vector of parsed specs. Caller frees
|
|
@return NC_NOERR if parse succeeded
|
|
@return NC_EINVAL if bad parameters or parse failed
|
|
*/
|
|
|
|
EXTERNL int
|
|
ncaux_filter_parselist(const char* txt0, size_t* nspecsp, NC_H5_Filterspec*** vectorp)
|
|
{
|
|
int stat = NC_NOERR;
|
|
size_t len = 0;
|
|
size_t nspecs = 0;
|
|
NC_H5_Filterspec** vector = NULL;
|
|
char* spec0 = NULL; /* with prefix */
|
|
char* spec = NULL; /* without prefix */
|
|
char* p = NULL;
|
|
char* q = NULL;
|
|
|
|
if(txt0 == NULL) return NC_EINVAL;
|
|
/* Duplicate txt0 so we can modify it */
|
|
len = strlen(txt0);
|
|
if((spec = calloc(1,len+1+1)) == NULL) return NC_ENOMEM;
|
|
memcpy(spec,txt0,len); /* Note double ending nul */
|
|
spec0 = spec; /* Save for later free */
|
|
|
|
/* See if there is a prefix '[format]' tag; ignore it */
|
|
if(spec[0] == LBRACK) {
|
|
spec = q; /* skip tag wrt later processing */
|
|
}
|
|
/* pass 1: count number of specs */
|
|
p = spec;
|
|
nspecs = 0;
|
|
while(*p) {
|
|
q = strchr(p,'|');
|
|
if(q == NULL) q = p + strlen(p); /* fake it */
|
|
nspecs++;
|
|
p = q + 1;
|
|
}
|
|
if(nspecs > 0) {
|
|
int count = 0;
|
|
if((vector = (NC_H5_Filterspec**)malloc(sizeof(NC_H5_Filterspec*)*nspecs)) == NULL)
|
|
{stat = NC_ENOMEM; goto done;}
|
|
/* pass 2: parse */
|
|
p = spec;
|
|
for(count=0;count<nspecs;count++) {
|
|
NC_H5_Filterspec* aspec = NULL;
|
|
q = strchr(p,'|');
|
|
if(q == NULL) q = p + strlen(p); /* fake it */
|
|
*q = '\0';
|
|
if(ncaux_filter_parsespec(p,&aspec))
|
|
{stat = NC_EINVAL; goto done;}
|
|
vector[count] = aspec; aspec = NULL;
|
|
p = q+1; /* ok because of double nul */
|
|
}
|
|
}
|
|
if(nspecsp) *nspecsp = nspecs;
|
|
if(vectorp) *vectorp = (nspecs == 0 ? NULL : vector);
|
|
vector = NULL;
|
|
done:
|
|
nullfree(spec0);
|
|
if(vector != NULL) {
|
|
int k;
|
|
for(k=0;k<nspecs;k++) {
|
|
NC_H5_Filterspec* nfs = vector[k];
|
|
if(nfs->params) free(nfs->params);
|
|
nullfree(nfs);
|
|
}
|
|
free(vector);
|
|
}
|
|
return stat;
|
|
}
|
|
#endif
|
|
|
|
/**************************************************/
|
|
/* Wrappers to export selected functions from libnetcdf */
|
|
|
|
EXTERNL int
|
|
ncaux_readfile(const char* filename, size_t* sizep, void** contentp)
|
|
{
|
|
int stat = NC_NOERR;
|
|
NCbytes* content = ncbytesnew();
|
|
stat = NC_readfile(filename,content);
|
|
if(stat == NC_NOERR && contentp)
|
|
*contentp = ncbytesextract(content);
|
|
ncbytesfree(content);
|
|
return stat;
|
|
}
|
|
|
|
EXTERNL int
|
|
ncaux_writefile(const char* filename, size_t size, void* content)
|
|
{
|
|
return NC_writefile(filename,size,content);
|
|
}
|