netcdf-c/libdispatch/datt.c
Dennis Heimbigner 59e04ae071 This PR adds EXPERIMENTAL support for accessing data in the
cloud using a variant of the Zarr protocol and storage
format. This enhancement is generically referred to as "NCZarr".

The data model supported by NCZarr is netcdf-4 minus the user-defined
types and the String type. In this sense it is similar to the CDF-5
data model.

More detailed information about enabling and using NCZarr is
described in the document NUG/nczarr.md and in a
[Unidata Developer's blog entry](https://www.unidata.ucar.edu/blogs/developer/en/entry/overview-of-zarr-support-in).

WARNING: this code has had limited testing, so do use this version
for production work. Also, performance improvements are ongoing.
Note especially the following platform matrix of successful tests:

Platform | Build System | S3 support
------------------------------------
Linux+gcc      | Automake     | yes
Linux+gcc      | CMake        | yes
Visual Studio  | CMake        | no

Additionally, and as a consequence of the addition of NCZarr,
major changes have been made to the Filter API. NOTE: NCZarr
does not yet support filters, but these changes are enablers for
that support in the future.  Note that it is possible
(probable?) that there will be some accidental reversions if the
changes here did not correctly mimic the existing filter testing.

In any case, previously filter ids and parameters were of type
unsigned int. In order to support the more general zarr filter
model, this was all converted to char*.  The old HDF5-specific,
unsigned int operations are still supported but they are
wrappers around the new, char* based nc_filterx_XXX functions.
This entailed at least the following changes:
1. Added the files libdispatch/dfilterx.c and include/ncfilter.h
2. Some filterx utilities have been moved to libdispatch/daux.c
3. A new entry, "filter_actions" was added to the NCDispatch table
   and the version bumped.
4. An overly complex set of structs was created to support funnelling
   all of the filterx operations thru a single dispatch
   "filter_actions" entry.
5. Move common code to from libhdf5 to libsrc4 so that it is accessible
   to nczarr.

Changes directly related to Zarr:
1. Modified CMakeList.txt and configure.ac to support both C and C++
   -- this is in support of S3 support via the awd-sdk libraries.
2. Define a size64_t type to support nczarr.
3. More reworking of libdispatch/dinfermodel.c to
   support zarr and to regularize the structure of the fragments
   section of a URL.

Changes not directly related to Zarr:
1. Make client-side filter registration be conditional, with default off.
2. Hack include/nc4internal.h to make some flags added by Ed be unique:
   e.g. NC_CREAT, NC_INDEF, etc.
3. cleanup include/nchttp.h and libdispatch/dhttp.c.
4. Misc. changes to support compiling under Visual Studio including:
   * Better testing under windows for dirent.h and opendir and closedir.
5. Misc. changes to the oc2 code to support various libcurl CURLOPT flags
   and to centralize error reporting.
6. By default, suppress the vlen tests that have unfixed memory leaks; add option to enable them.
7. Make part of the nc_test/test_byterange.sh test be contingent on remotetest.unidata.ucar.edu being accessible.

Changes Left TO-DO:
1. fix provenance code, it is too HDF5 specific.
2020-06-28 18:02:47 -06:00

189 lines
6.0 KiB
C

/*Copyright 2018 University Corporation for Atmospheric
Research/Unidata. See copyright file for more info. */
/**
* @file
*
* These functions in this file rename and delete attributes.
*/
#include "config.h"
#include "ncdispatch.h"
/**
* @defgroup attributes Attributes
*
* Attributes hold metadata about data and files.
*
* @image html ncatts.png "Attributes store metadata."
*
* Attributes may be associated with a netCDF variable to specify such
* properties as units, special values, maximum and minimum valid
* values, scaling factors, and offsets.
*
* It is also possible to have attributes that are not associated with
* any variable. These are called global attributes and are identified
* by using ::NC_GLOBAL as a variable pseudo-ID. Global attributes are
* related to the netCDF dataset as a whole and may be used for
* purposes such as providing a title or processing history for a
* netCDF dataset. In netCDF-4/HDF5 files, global attributes are
* associated with a hierarchical group.
*
* An attribute is designated by its variable ID and name. When an
* attribute name is not known, it may be designated by its variable
* ID and number in order to determine its name, using the function
* nc_inq_attname().
*
* Operations supported on attributes are:
* - Create an attribute, given its variable ID, name, data type,
* length, and value.
* - Get attribute's data type and length from its variable ID and
name.
* - Get attribute's value from its variable ID and name.
* - Copy attribute from one netCDF variable to another.
* - Get name of attribute from its number.
* - Rename an attribute.
* - Delete an attribute.
*/
/** @{*/
/**
* @name Deleting and Renaming Attributes
*
* Functions to delete or rename an attribute. */
/**@{*/ /* Start doxygen member group. */
/**
* Rename an attribute.
*
* The function nc_rename_att() changes the name of an attribute. In
* classic formats, if the new name is longer than the original name,
* the netCDF dataset must be in define mode. In netCDF-4/HDF5 files,
* attributes may be renamed at any time. You cannot rename an
* attribute to have the same name as another attribute of the same
* variable.
*
* @param ncid NetCDF or group ID, from a previous call to nc_open(),
* nc_create(), nc_def_grp(), or associated inquiry functions such as
* nc_inq_ncid().
* @param varid Variable ID of the attribute's variable, or
* ::NC_GLOBAL for a global attribute.
* @param name Attribute \ref object_name.
* @param newname The new attribute \ref object_name.
*
* <h1>Example</h1>
*
* Here is an example using nc_rename_att() to rename the variable
* attribute units to Units for a variable rh in an existing netCDF
* dataset named foo.nc:
*
@code
#include <netcdf.h>
...
int status;
int ncid;
int rh_id;
...
status = nc_open("foo.nc", NC_NOWRITE, &ncid);
if (status != NC_NOERR) handle_error(status);
...
status = nc_inq_varid (ncid, "rh", &rh_id);
if (status != NC_NOERR) handle_error(status);
...
status = nc_rename_att(ncid, rh_id, "units", "Units");
if (status != NC_NOERR) handle_error(status);
@endcode
* @return ::NC_NOERR No error.
* @return ::NC_EBADID Bad ncid.
* @return ::NC_ENOTVAR Bad varid.
* @return ::NC_EBADNAME Bad name.
* @return ::NC_EMAXNAME New name too long.
* @return ::NC_EINVAL Name or new name not provided.
* @return ::NC_ENAMEINUSE Name already in use.
* @return ::NC_EPERM File was opened read only.
* @return ::NC_ENOTINDEFINE File is not in define mode.
* @return ::NC_ENOTATT Attribute not found.
* @return ::NC_EHDFERR Failure at HDF5 layer.
* @return ::NC_ENOMEM Out of memory.
*
* @author Glenn Davis, Ed Hartnett, Dennis Heimbigner
*/
int
nc_rename_att(int ncid, int varid, const char *name, const char *newname)
{
NC* ncp;
int stat = NC_check_id(ncid, &ncp);
if(stat != NC_NOERR) return stat;
TRACE(nc_rename_att);
return ncp->dispatch->rename_att(ncid, varid, name, newname);
}
/**
* Delete an attribute.
*
* The function nc_del_att() deletes a netCDF attribute from an open
* netCDF dataset. For classic netCDF formats, the dataset must be in
* define mode to delete an attribute. In netCDF-4/HDF5 files,
* attributes may be deleted at any time.
*
* @param ncid NetCDF or group ID, from a previous call to nc_open(),
* nc_create(), nc_def_grp(), or associated inquiry functions such as
* nc_inq_ncid().
* @param varid Variable ID of the attribute's variable, or
* ::NC_GLOBAL for a global attribute.
* @param name Attribute name.
*
* <h1>Example</h1>
*
* Here is an example using nc_del_att() to delete the variable
* attribute Units for a variable rh in an existing netCDF dataset
* named foo.nc:
@code
#include <netcdf.h>
...
int status;
int ncid;
int rh_id;
...
status = nc_open("foo.nc", NC_WRITE, &ncid);
if (status != NC_NOERR) handle_error(status);
...
status = nc_inq_varid (ncid, "rh", &rh_id);
if (status != NC_NOERR) handle_error(status);
...
status = nc_redef(ncid);
if (status != NC_NOERR) handle_error(status);
status = nc_del_att(ncid, rh_id, "Units");
if (status != NC_NOERR) handle_error(status);
status = nc_enddef(ncid);
if (status != NC_NOERR) handle_error(status);
@endcode
* @return ::NC_NOERR No error.
* @return ::NC_EBADID Bad ncid.
* @return ::NC_ENOTVAR Bad varid.
* @return ::NC_EBADNAME Bad name.
* @return ::NC_EINVAL Name not provided.
* @return ::NC_EPERM File was opened read only.
* @return ::NC_ENOTINDEFINE File is not in define mode.
* @return ::NC_ENOTATT Attribute not found.
* @return ::NC_EATTMETA Failure at HDF5 layer.
*
* @author Glenn Davis, Ed Hartnett, Dennis Heimbigner
*/
int
nc_del_att(int ncid, int varid, const char *name)
{
NC* ncp;
int stat = NC_check_id(ncid, &ncp);
if(stat != NC_NOERR) return stat;
TRACE(nc_del_att);
stat = ncp->dispatch->del_att(ncid, varid, name);
return stat;
}
/**@}*/ /* End doxygen member group. */
/**@}*/