netcdf-c/libsrc/httpio.c
Dennis Heimbigner bf2746b8ea Provide byte-range reading of remote datasets
re: issue https://github.com/Unidata/netcdf-c/issues/1251

Assume that you have the URL to a remote dataset
which is a normal netcdf-3 or netcdf-4 file.

This PR allows the netcdf-c to read that dataset's
contents as a netcdf file using HTTP byte ranges
if the remote server supports byte-range access.

Originally, this PR was set up to access Amazon S3 objects,
but it can also access other remote datasets such as those
provided by a Thredds server via the HTTPServer access protocol.
It may also work for other kinds of servers.

Note that this is not intended as a true production
capability because, as is known, this kind of access to
can be quite slow. In addition, the byte-range IO drivers
do not currently do any sort of optimization or caching.

An additional goal here is to gain some experience with
the Amazon S3 REST protocol.

This architecture and its use documented in
the file docs/byterange.dox.

There are currently two test cases:

1. nc_test/tst_s3raw.c - this does a simple open, check format, close cycle
   for a remote netcdf-3 file and a remote netcdf-4 file.
2. nc_test/test_s3raw.sh - this uses ncdump to investigate some remote
   datasets.

This PR also incorporates significantly changed model inference code
(see the superceded PR https://github.com/Unidata/netcdf-c/pull/1259).

1. It centralizes the code that infers the dispatcher.
2. It adds support for byte-range URLs

Other changes:

1. NC_HDF5_finalize was not being properly called by nc_finalize().
2. Fix minor bug in ncgen3.l
3. fix memory leak in nc4info.c
4. add code to walk the .daprc triples and to replace protocol=
   fragment tag with a more general mode= tag.

Final Note:
Th inference code is still way too complicated. We need to move
to the validfile() model used by netcdf Java, where each
dispatcher is asked if it can process the file. This decentralizes
the inference code. This will be done after all the major new
dispatchers (PIO, Zarr, etc) have been implemented.
2019-01-01 18:27:36 -07:00

297 lines
7.6 KiB
C

/*********************************************************************
* Copyright 2018, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
* ********************************************************************/
#if HAVE_CONFIG_H
#include <config.h>
#endif
#include <assert.h>
#include <stdlib.h>
#include <errno.h>
#include <string.h>
#ifdef HAVE_FCNTL_H
#include <fcntl.h>
#endif
#ifdef _MSC_VER /* Microsoft Compilers */
#include <io.h>
#endif
#ifdef HAVE_UNISTD_H
#include <unistd.h>
#endif
#include "nc3internal.h"
#undef DEBUG
#ifdef DEBUG
#include <stdio.h>
#endif
#include <curl/curl.h>
#include "ncio.h"
#include "fbits.h"
#include "rnd.h"
#include "ncbytes.h"
#include "nchttp.h"
#define DEFAULTPAGESIZE 16384
/* Private data */
typedef struct NCHTTP {
CURL* curl; /* curl handle */
long long size; /* of the S3 object */
NCbytes* region;
} NCHTTP;
/* Forward */
static int httpio_rel(ncio *const nciop, off_t offset, int rflags);
static int httpio_get(ncio *const nciop, off_t offset, size_t extent, int rflags, void **const vpp);
static int httpio_move(ncio *const nciop, off_t to, off_t from, size_t nbytes, int rflags);
static int httpio_sync(ncio *const nciop);
static int httpio_filesize(ncio* nciop, off_t* filesizep);
static int httpio_pad_length(ncio* nciop, off_t length);
static int httpio_close(ncio* nciop, int);
static long pagesize = 0;
/* Create a new ncio struct to hold info about the file. */
static int
httpio_new(const char* path, int ioflags, ncio** nciopp, NCHTTP** hpp)
{
int status = NC_NOERR;
ncio* nciop = NULL;
NCHTTP* http = NULL;
if(pagesize == 0)
pagesize = DEFAULTPAGESIZE;
errno = 0;
nciop = (ncio* )calloc(1,sizeof(ncio));
if(nciop == NULL) {status = NC_ENOMEM; goto fail;}
nciop->ioflags = ioflags;
*((char**)&nciop->path) = strdup(path);
if(nciop->path == NULL) {status = NC_ENOMEM; goto fail;}
*((ncio_relfunc**)&nciop->rel) = httpio_rel;
*((ncio_getfunc**)&nciop->get) = httpio_get;
*((ncio_movefunc**)&nciop->move) = httpio_move;
*((ncio_syncfunc**)&nciop->sync) = httpio_sync;
*((ncio_filesizefunc**)&nciop->filesize) = httpio_filesize;
*((ncio_pad_lengthfunc**)&nciop->pad_length) = httpio_pad_length;
*((ncio_closefunc**)&nciop->close) = httpio_close;
http = (NCHTTP*)calloc(1,sizeof(NCHTTP));
if(http == NULL) {status = NC_ENOMEM; goto fail;}
*((void* *)&nciop->pvt) = http;
if(nciopp) *nciopp = nciop;
if(hpp) *hpp = http;
done:
return status;
fail:
if(http != NULL) {
if(http->region)
ncbytesfree(http->region);
free(http);
}
if(nciop != NULL) {
if(nciop->path != NULL) free((char*)nciop->path);
}
goto done;
}
/* Create a file, and the ncio struct to go with it. This function is
only called from nc__create_mp.
path - path of file to create.
ioflags - flags from nc_create
initialsz - From the netcdf man page: "The argument
Iinitialsize sets the initial size of the file at creation time."
igeto -
igetsz -
sizehintp - the size of a page of data for buffered reads and writes.
nciopp - pointer to a pointer that will get location of newly
created and inited ncio struct.
mempp - pointer to pointer to the initial memory read.
*/
int
httpio_create(const char* path, int ioflags,
size_t initialsz,
off_t igeto, size_t igetsz, size_t* sizehintp,
void* parameters,
ncio* *nciopp, void** const mempp)
{
return NC_EPERM;
}
/* This function opens the data file. It is only called from nc.c,
from nc__open_mp and nc_delete_mp.
path - path of data file.
ioflags - flags passed into nc_open.
igeto - looks like this function can do an initial page get, and
igeto is going to be the offset for that. But it appears to be
unused
igetsz - the size in bytes of initial page get (a.k.a. extent). Not
ever used in the library.
sizehintp - the size of a page of data for buffered reads and writes.
nciopp - pointer to pointer that will get address of newly created
and inited ncio struct.
mempp - pointer to pointer to the initial memory read.
*/
int
httpio_open(const char* path,
int ioflags,
/* ignored */ off_t igeto, size_t igetsz, size_t* sizehintp,
/* ignored */ void* parameters,
ncio* *nciopp,
/* ignored */ void** const mempp)
{
ncio* nciop;
int status;
NCHTTP* http = NULL;
size_t sizehint;
if(path == NULL ||* path == 0)
return EINVAL;
/* Create private data */
if((status = httpio_new(path, ioflags, &nciop, &http))) goto done;
/* Open the path and get curl handle and object size */
if((status = nc_http_open(path,&http->curl,&http->size))) goto done;
sizehint = pagesize;
/* sizehint must be multiple of 8 */
sizehint = (sizehint / 8) * 8;
if(sizehint < 8) sizehint = 8;
*sizehintp = sizehint;
*nciopp = nciop;
done:
if(status)
httpio_close(nciop,0);
return status;
}
/*
* Get file size in bytes.
*/
static int
httpio_filesize(ncio* nciop, off_t* filesizep)
{
NCHTTP* http;
if(nciop == NULL || nciop->pvt == NULL) return NC_EINVAL;
http = (NCHTTP*)nciop->pvt;
if(filesizep != NULL) *filesizep = http->size;
return NC_NOERR;
}
/*
* Sync any changes to disk, then truncate or extend file so its size
* is length. This is only intended to be called before close, if the
* file is open for writing and the actual size does not match the
* calculated size, perhaps as the result of having been previously
* written in NOFILL mode.
*/
static int
httpio_pad_length(ncio* nciop, off_t length)
{
return NC_NOERR; /* do nothing */
}
/* Write out any dirty buffers to disk and
ensure that next read will get data from disk.
Sync any changes, then close the open file associated with the ncio
struct, and free its memory.
nciop - pointer to ncio to close.
doUnlink - if true, unlink file
*/
static int
httpio_close(ncio* nciop, int doUnlink)
{
int status = NC_NOERR;
NCHTTP* http;
if(nciop == NULL || nciop->pvt == NULL) return NC_NOERR;
http = (NCHTTP*)nciop->pvt;
assert(http != NULL);
status = nc_http_close(http->curl);
/* do cleanup */
if(http != NULL) {
ncbytesfree(http->region);
free(http);
}
if(nciop->path != NULL) free((char*)nciop->path);
free(nciop);
return status;
}
/*
* Request that the region (offset, extent)
* be made available through *vpp.
*/
static int
httpio_get(ncio* const nciop, off_t offset, size_t extent, int rflags, void** const vpp)
{
int status = NC_NOERR;
NCHTTP* http;
if(nciop == NULL || nciop->pvt == NULL) {status = NC_EINVAL; goto done;}
http = (NCHTTP*)nciop->pvt;
assert(http->region == NULL);
http->region = ncbytesnew();
ncbytessetalloc(http->region,(unsigned long)extent);
if((status = nc_http_read(http->curl,nciop->path,offset,extent,http->region)))
goto done;
assert(ncbyteslength(http->region) == extent);
if(vpp) *vpp = ncbytescontents(http->region);
done:
return status;
}
/*
* Like memmove(), safely move possibly overlapping data.
*/
static int
httpio_move(ncio* const nciop, off_t to, off_t from, size_t nbytes, int ignored)
{
return NC_EPERM;
}
static int
httpio_rel(ncio* const nciop, off_t offset, int rflags)
{
int status = NC_NOERR;
NCHTTP* http;
if(nciop == NULL || nciop->pvt == NULL) {status = NC_EINVAL; goto done;}
http = (NCHTTP*)nciop->pvt;
ncbytesfree(http->region);
http->region = NULL;
done:
return status;
}
/*
* Write out any dirty buffers to disk and
* ensure that next read will get data from disk.
*/
static int
httpio_sync(ncio* const nciop)
{
return NC_NOERR; /* do nothing */
}